Gchil2007.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2007.t1
Unique Name	Gchil2007.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	672

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004439_pilon	contig	tig00004439_pilon:1689312..1691327 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45351.EDO30579
PFAMs	HH_signal,Hint
Max annot lvl	33208\|Metazoa
Evalue	1.14e-13
EggNOG OGs	KOG3638@1\|root,KOG3638@2759\|Eukaryota,38EJM@33154\|Opisthokonta,3BA86@33208\|Metazoa
Description	intein-mediated protein splicing
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2007	Gchil2007	Gracilaria chilensis NLEC103_M9 male	gene	tig00004439_pilon 1689312..1691327 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2007.t1.stop1	Gchil2007.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004439_pilon 1689312..1689314 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2007.t1.CDS1	Gchil2007.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004439_pilon 1689312..1691327 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2007.t1.exon1	Gchil2007.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004439_pilon 1689312..1691327 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2007.t1.start1	Gchil2007.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004439_pilon 1691325..1691327 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2007.t1	Gchil2007.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004439_pilon 1689312..1691327 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004439_pilon:1689312..1691327-
coding sequence from alignment at tig00004439_pilon:1689312..1691327-

mRNA sequence

>Gchil2007.t1 ID=Gchil2007.t1|Name=Gchil2007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=672bp
MLPDGFSFDDNGSTSRFAHDTANHGALAVTQQYNVPAHIALARLDASSSK
PLNHWTADVFVAFPQRNALLKASIRVHRPLSARSPLCFNLLSISYCDCLQ
MGSTRAYLLLILVLGCSFRSPVLAVPSLPSIARIATYDDISTTFNLVYAV
TDSCPSSVTFGVYTNDERQFPILPPSNIEEDGSQCSGEGSLNFVTERTVN
EPELLEALRLESFREALSKNGNAEALVNSKITNDLLVGWHSGTRTCGSLS
YPTETIYFVIREDQDYKITFRRSDSSNRVNIPPNLRSLLIVAPRNQVCLL
VDKSTNPDQDVTLLTEYSNGTVANSQLTTAGAIALEPPNEAFTDEDNSSS
SATNEDDTDDLSTTTEEIADAPPSQSISPEPSPSASSSAPPSTAPAPSVA
PILPVAPPTSDSGTLESSPSPLATVAISPSDFGTLIASPNAFATVAPSPS
ALSSIFPAASALPPGAAGGIAFEDDLESSSEENDGSACFPASAVVRTERG
DVPMHQVQIGDRVQTAIGFSDVLLFTHRLRGGQFGFTKLKVKSGRELIVS
DGHYLFRNNGDLMAASSVVAGDVLRMADDSEDGSVVETVRIFDVGLYNPQ
TESGSIVVNGFVTSTYTTAVDPKMAHTALLMPVRMMYKVWRWPVEQLSLA
LEEGSRIGRWMPRGEAEVVGL*

spliced messenger RNA

>Gchil2007.t1 ID=Gchil2007.t1|Name=Gchil2007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2016bp|location=Sequence derived from alignment at tig00004439_pilon:1689312..1691327- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCCGGACGGCTTCTCATTCGACGACAACGGCTCCACATCTCGCTT
TGCGCATGACACAGCCAATCACGGAGCGCTTGCCGTTACACAACAATACA
ACGTCCCTGCTCATATCGCACTGGCGCGCCTTGATGCTTCGTCTTCAAAA
CCTCTCAATCACTGGACCGCCGACGTCTTTGTCGCGTTCCCGCAACGGAA
CGCTCTACTTAAGGCTTCAATTCGCGTTCACCGCCCACTGTCTGCGCGTT
CACCGCTTTGTTTCAACCTCTTATCCATTTCGTACTGCGATTGCCTCCAA
ATGGGGTCAACGCGCGCTTATCTCCTCCTTATCCTTGTGCTTGGGTGCAG
CTTCCGTTCTCCGGTATTGGCCGTGCCATCACTTCCTTCAATCGCTCGTA
TCGCTACGTACGATGACATTAGCACCACTTTCAACCTGGTGTACGCGGTC
ACGGATTCGTGTCCCTCGTCGGTAACCTTTGGTGTATACACCAACGACGA
ACGTCAGTTTCCAATCTTGCCCCCGTCAAACATCGAAGAGGATGGTTCAC
AATGTTCTGGTGAAGGTTCTCTGAACTTCGTCACAGAACGCACAGTGAAC
GAGCCTGAATTGTTGGAAGCGCTCCGCCTCGAATCATTCCGAGAAGCGCT
CAGCAAAAATGGCAATGCAGAAGCTTTGGTCAATAGCAAAATCACAAATG
ATTTGCTTGTTGGATGGCACAGTGGCACACGTACATGTGGGTCGCTTTCT
TATCCAACAGAAACCATCTACTTCGTCATTCGAGAAGACCAGGATTACAA
GATCACTTTTCGAAGATCTGATTCGAGCAATCGAGTCAACATTCCACCTA
ATCTTCGTTCATTACTAATTGTGGCTCCTCGCAATCAGGTCTGTCTGCTC
GTTGACAAAAGTACAAATCCTGATCAAGATGTCACTCTCCTCACTGAATA
CTCTAATGGAACTGTAGCTAATTCGCAGCTCACAACTGCCGGTGCTATTG
CGCTGGAACCACCAAATGAAGCCTTTACTGATGAGGATAATAGCTCTTCC
TCCGCCACCAATGAAGACGATACGGACGATCTCAGTACGACAACGGAGGA
AATCGCTGACGCACCTCCCTCGCAATCAATATCTCCGGAACCAAGCCCGA
GTGCAAGCTCTTCAGCTCCACCGAGTACCGCTCCAGCTCCGTCTGTAGCT
CCTATCCTCCCAGTCGCACCGCCAACAAGTGACTCTGGCACTCTGGAATC
ATCACCCAGCCCCCTAGCGACAGTGGCAATATCGCCAAGTGACTTCGGCA
CCCTGATCGCATCTCCCAATGCCTTCGCTACCGTTGCACCATCACCCTCC
GCCTTGAGTAGCATCTTTCCCGCGGCCAGTGCCCTACCGCCAGGAGCAGC
TGGTGGCATAGCGTTCGAGGACGATTTGGAATCTTCATCCGAAGAGAATG
ATGGCTCGGCTTGTTTCCCAGCTTCAGCCGTGGTGCGGACTGAGAGGGGT
GATGTCCCAATGCACCAGGTTCAGATTGGAGACAGAGTGCAGACTGCAAT
CGGCTTTTCTGATGTATTGCTGTTCACGCATCGGCTGAGGGGTGGTCAAT
TCGGGTTCACAAAACTGAAGGTGAAGAGTGGGCGAGAGCTGATTGTATCA
GATGGTCACTACTTGTTCAGAAACAACGGAGATTTGATGGCTGCCTCTTC
CGTGGTGGCCGGCGATGTTCTGCGCATGGCTGACGACTCTGAAGACGGAA
GTGTGGTGGAGACTGTAAGAATATTTGATGTAGGATTGTATAATCCGCAA
ACAGAAAGCGGGAGCATCGTGGTGAATGGATTCGTGACTTCGACATACAC
TACGGCAGTGGATCCGAAGATGGCGCATACGGCGCTGTTGATGCCGGTCC
GAATGATGTACAAGGTTTGGAGATGGCCAGTTGAACAATTGAGTTTGGCG
TTGGAAGAAGGAAGCAGGATTGGCAGATGGATGCCGAGGGGGGAGGCTGA
GGTTGTTGGATTGTAG

protein sequence of Gchil2007.t1

>Gchil2007.t1 ID=Gchil2007.t1|Name=Gchil2007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=672bp
MLPDGFSFDDNGSTSRFAHDTANHGALAVTQQYNVPAHIALARLDASSSK
PLNHWTADVFVAFPQRNALLKASIRVHRPLSARSPLCFNLLSISYCDCLQ
MGSTRAYLLLILVLGCSFRSPVLAVPSLPSIARIATYDDISTTFNLVYAV
TDSCPSSVTFGVYTNDERQFPILPPSNIEEDGSQCSGEGSLNFVTERTVN
EPELLEALRLESFREALSKNGNAEALVNSKITNDLLVGWHSGTRTCGSLS
YPTETIYFVIREDQDYKITFRRSDSSNRVNIPPNLRSLLIVAPRNQVCLL
VDKSTNPDQDVTLLTEYSNGTVANSQLTTAGAIALEPPNEAFTDEDNSSS
SATNEDDTDDLSTTTEEIADAPPSQSISPEPSPSASSSAPPSTAPAPSVA
PILPVAPPTSDSGTLESSPSPLATVAISPSDFGTLIASPNAFATVAPSPS
ALSSIFPAASALPPGAAGGIAFEDDLESSSEENDGSACFPASAVVRTERG
DVPMHQVQIGDRVQTAIGFSDVLLFTHRLRGGQFGFTKLKVKSGRELIVS
DGHYLFRNNGDLMAASSVVAGDVLRMADDSEDGSVVETVRIFDVGLYNPQ
TESGSIVVNGFVTSTYTTAVDPKMAHTALLMPVRMMYKVWRWPVEQLSLA
LEEGSRIGRWMPRGEAEVVGL*

mRNA from alignment at tig00004439_pilon:1689312..1691327-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2007.t1 ID=Gchil2007.t1|Name=Gchil2007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2016bp|location=Sequence derived from alignment at tig00004439_pilon:1689312..1691327- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCCGGACGGCTTCTCATTCGACGACAACGGCTCCACATCTCGCTT
TGCGCATGACACAGCCAATCACGGAGCGCTTGCCGTTACACAACAATACA
ACGTCCCTGCTCATATCGCACTGGCGCGCCTTGATGCTTCGTCTTCAAAA
CCTCTCAATCACTGGACCGCCGACGTCTTTGTCGCGTTCCCGCAACGGAA
CGCTCTACTTAAGGCTTCAATTCGCGTTCACCGCCCACTGTCTGCGCGTT
CACCGCTTTGTTTCAACCTCTTATCCATTTCGTACTGCGATTGCCTCCAA
ATGGGGTCAACGCGCGCTTATCTCCTCCTTATCCTTGTGCTTGGGTGCAG
CTTCCGTTCTCCGGTATTGGCCGTGCCATCACTTCCTTCAATCGCTCGTA
TCGCTACGTACGATGACATTAGCACCACTTTCAACCTGGTGTACGCGGTC
ACGGATTCGTGTCCCTCGTCGGTAACCTTTGGTGTATACACCAACGACGA
ACGTCAGTTTCCAATCTTGCCCCCGTCAAACATCGAAGAGGATGGTTCAC
AATGTTCTGGTGAAGGTTCTCTGAACTTCGTCACAGAACGCACAGTGAAC
GAGCCTGAATTGTTGGAAGCGCTCCGCCTCGAATCATTCCGAGAAGCGCT
CAGCAAAAATGGCAATGCAGAAGCTTTGGTCAATAGCAAAATCACAAATG
ATTTGCTTGTTGGATGGCACAGTGGCACACGTACATGTGGGTCGCTTTCT
TATCCAACAGAAACCATCTACTTCGTCATTCGAGAAGACCAGGATTACAA
GATCACTTTTCGAAGATCTGATTCGAGCAATCGAGTCAACATTCCACCTA
ATCTTCGTTCATTACTAATTGTGGCTCCTCGCAATCAGGTCTGTCTGCTC
GTTGACAAAAGTACAAATCCTGATCAAGATGTCACTCTCCTCACTGAATA
CTCTAATGGAACTGTAGCTAATTCGCAGCTCACAACTGCCGGTGCTATTG
CGCTGGAACCACCAAATGAAGCCTTTACTGATGAGGATAATAGCTCTTCC
TCCGCCACCAATGAAGACGATACGGACGATCTCAGTACGACAACGGAGGA
AATCGCTGACGCACCTCCCTCGCAATCAATATCTCCGGAACCAAGCCCGA
GTGCAAGCTCTTCAGCTCCACCGAGTACCGCTCCAGCTCCGTCTGTAGCT
CCTATCCTCCCAGTCGCACCGCCAACAAGTGACTCTGGCACTCTGGAATC
ATCACCCAGCCCCCTAGCGACAGTGGCAATATCGCCAAGTGACTTCGGCA
CCCTGATCGCATCTCCCAATGCCTTCGCTACCGTTGCACCATCACCCTCC
GCCTTGAGTAGCATCTTTCCCGCGGCCAGTGCCCTACCGCCAGGAGCAGC
TGGTGGCATAGCGTTCGAGGACGATTTGGAATCTTCATCCGAAGAGAATG
ATGGCTCGGCTTGTTTCCCAGCTTCAGCCGTGGTGCGGACTGAGAGGGGT
GATGTCCCAATGCACCAGGTTCAGATTGGAGACAGAGTGCAGACTGCAAT
CGGCTTTTCTGATGTATTGCTGTTCACGCATCGGCTGAGGGGTGGTCAAT
TCGGGTTCACAAAACTGAAGGTGAAGAGTGGGCGAGAGCTGATTGTATCA
GATGGTCACTACTTGTTCAGAAACAACGGAGATTTGATGGCTGCCTCTTC
CGTGGTGGCCGGCGATGTTCTGCGCATGGCTGACGACTCTGAAGACGGAA
GTGTGGTGGAGACTGTAAGAATATTTGATGTAGGATTGTATAATCCGCAA
ACAGAAAGCGGGAGCATCGTGGTGAATGGATTCGTGACTTCGACATACAC
TACGGCAGTGGATCCGAAGATGGCGCATACGGCGCTGTTGATGCCGGTCC
GAATGATGTACAAGGTTTGGAGATGGCCAGTTGAACAATTGAGTTTGGCG
TTGGAAGAAGGAAGCAGGATTGGCAGATGGATGCCGAGGGGGGAGGCTGA
GGTTGTTGGATTGTAG

Coding sequence (CDS) from alignment at tig00004439_pilon:1689312..1691327-

>Gchil2007.t1 ID=Gchil2007.t1|Name=Gchil2007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2016bp|location=Sequence derived from alignment at tig00004439_pilon:1689312..1691327- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCCGGACGGCTTCTCATTCGACGACAACGGCTCCACATCTCGCTT
TGCGCATGACACAGCCAATCACGGAGCGCTTGCCGTTACACAACAATACA
ACGTCCCTGCTCATATCGCACTGGCGCGCCTTGATGCTTCGTCTTCAAAA
CCTCTCAATCACTGGACCGCCGACGTCTTTGTCGCGTTCCCGCAACGGAA
CGCTCTACTTAAGGCTTCAATTCGCGTTCACCGCCCACTGTCTGCGCGTT
CACCGCTTTGTTTCAACCTCTTATCCATTTCGTACTGCGATTGCCTCCAA
ATGGGGTCAACGCGCGCTTATCTCCTCCTTATCCTTGTGCTTGGGTGCAG
CTTCCGTTCTCCGGTATTGGCCGTGCCATCACTTCCTTCAATCGCTCGTA
TCGCTACGTACGATGACATTAGCACCACTTTCAACCTGGTGTACGCGGTC
ACGGATTCGTGTCCCTCGTCGGTAACCTTTGGTGTATACACCAACGACGA
ACGTCAGTTTCCAATCTTGCCCCCGTCAAACATCGAAGAGGATGGTTCAC
AATGTTCTGGTGAAGGTTCTCTGAACTTCGTCACAGAACGCACAGTGAAC
GAGCCTGAATTGTTGGAAGCGCTCCGCCTCGAATCATTCCGAGAAGCGCT
CAGCAAAAATGGCAATGCAGAAGCTTTGGTCAATAGCAAAATCACAAATG
ATTTGCTTGTTGGATGGCACAGTGGCACACGTACATGTGGGTCGCTTTCT
TATCCAACAGAAACCATCTACTTCGTCATTCGAGAAGACCAGGATTACAA
GATCACTTTTCGAAGATCTGATTCGAGCAATCGAGTCAACATTCCACCTA
ATCTTCGTTCATTACTAATTGTGGCTCCTCGCAATCAGGTCTGTCTGCTC
GTTGACAAAAGTACAAATCCTGATCAAGATGTCACTCTCCTCACTGAATA
CTCTAATGGAACTGTAGCTAATTCGCAGCTCACAACTGCCGGTGCTATTG
CGCTGGAACCACCAAATGAAGCCTTTACTGATGAGGATAATAGCTCTTCC
TCCGCCACCAATGAAGACGATACGGACGATCTCAGTACGACAACGGAGGA
AATCGCTGACGCACCTCCCTCGCAATCAATATCTCCGGAACCAAGCCCGA
GTGCAAGCTCTTCAGCTCCACCGAGTACCGCTCCAGCTCCGTCTGTAGCT
CCTATCCTCCCAGTCGCACCGCCAACAAGTGACTCTGGCACTCTGGAATC
ATCACCCAGCCCCCTAGCGACAGTGGCAATATCGCCAAGTGACTTCGGCA
CCCTGATCGCATCTCCCAATGCCTTCGCTACCGTTGCACCATCACCCTCC
GCCTTGAGTAGCATCTTTCCCGCGGCCAGTGCCCTACCGCCAGGAGCAGC
TGGTGGCATAGCGTTCGAGGACGATTTGGAATCTTCATCCGAAGAGAATG
ATGGCTCGGCTTGTTTCCCAGCTTCAGCCGTGGTGCGGACTGAGAGGGGT
GATGTCCCAATGCACCAGGTTCAGATTGGAGACAGAGTGCAGACTGCAAT
CGGCTTTTCTGATGTATTGCTGTTCACGCATCGGCTGAGGGGTGGTCAAT
TCGGGTTCACAAAACTGAAGGTGAAGAGTGGGCGAGAGCTGATTGTATCA
GATGGTCACTACTTGTTCAGAAACAACGGAGATTTGATGGCTGCCTCTTC
CGTGGTGGCCGGCGATGTTCTGCGCATGGCTGACGACTCTGAAGACGGAA
GTGTGGTGGAGACTGTAAGAATATTTGATGTAGGATTGTATAATCCGCAA
ACAGAAAGCGGGAGCATCGTGGTGAATGGATTCGTGACTTCGACATACAC
TACGGCAGTGGATCCGAAGATGGCGCATACGGCGCTGTTGATGCCGGTCC
GAATGATGTACAAGGTTTGGAGATGGCCAGTTGAACAATTGAGTTTGGCG
TTGGAAGAAGGAAGCAGGATTGGCAGATGGATGCCGAGGGGGGAGGCTGA
GGTTGTTGGATTGTAG