Gchil1884.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1884.t1
Unique NameGchil1884.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length504
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:963358..964869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1884Gchil1884Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 963358..964869 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1884.t1.stop1Gchil1884.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 963358..963360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1884.t1.CDS1Gchil1884.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 963358..964869 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1884.t1.exon1Gchil1884.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 963358..964869 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1884.t1.start1Gchil1884.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 964867..964869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1884.t1Gchil1884.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 963358..964869 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1884.t1 ID=Gchil1884.t1|Name=Gchil1884.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=504bp
MNSEPASSLDGLSGMYELVIDAVGKTQEQDTGVKEVRKRCLQNISTNLGD
SFATAKSTIVEGLDKSKSIAGEIDNLPEAVHKEVRDLPEKLKFPLLDKIR
DKVMTLLAQLHTMAENPIELYPRLLCGSIPVDPAKVTKFTKQYRILQQLN
DIDDGISQNDRSLSAPPKSSAEVIEKVVSSAQGLSDAVLKSINELLGLGE
DFEEIKEFEKTLSQVKEPIGDLLNQQEEIYRMINRLKAMFFSEDVHSEKE
SDGERERDFGAGILETVQSGSTLLDNVIQSRSVLEDSVSKIRNLKGLFVE
QTNCLQKRLDKICGLFEILSRVFKQFVANLPRLAREIRQFFVPTGWRAFV
MRPSDVLMSVLANFEDLRATLPDPDLVQPRSTNPTENSDLIGRMKETKEN
MEELMLIPCRLIDGIQEQDFQHQIVATVKNTLVSMLDELTVSAAARVKDG
VEGMLGQFVDGVENLFPQNSSSSYSSAPTKDEKKGVLAKLMGEVQGGWFK
AIF*
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spliced messenger RNA

>Gchil1884.t1 ID=Gchil1884.t1|Name=Gchil1884.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00004439_pilon:963358..964869- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATAGCGAGCCCGCCTCCTCTTTAGATGGTTTATCCGGAATGTATGA
GCTGGTAATTGACGCAGTCGGTAAGACACAAGAACAAGATACCGGGGTTA
AAGAAGTCAGAAAGAGATGTTTACAAAACATCTCAACCAACCTTGGAGAC
AGTTTCGCGACAGCCAAATCAACAATCGTGGAGGGCTTGGATAAATCAAA
GAGTATTGCGGGAGAAATTGATAACCTACCAGAAGCCGTGCACAAGGAAG
TAAGGGACTTACCAGAGAAGCTGAAATTCCCTTTGCTGGACAAGATCCGA
GATAAGGTCATGACTCTACTAGCACAACTTCATACTATGGCTGAGAATCC
AATCGAGCTTTATCCTCGCCTTCTTTGTGGTAGCATTCCCGTTGACCCAG
CAAAAGTAACCAAGTTCACCAAACAATACCGTATTCTTCAACAACTTAAC
GACATAGATGATGGCATTTCTCAAAATGATCGCTCACTGTCTGCCCCGCC
GAAATCTTCCGCCGAAGTTATCGAAAAAGTGGTTTCGTCCGCTCAAGGTC
TTTCAGACGCCGTTCTGAAATCAATAAACGAGTTGTTGGGACTTGGTGAA
GACTTCGAGGAAATCAAAGAATTCGAGAAAACACTGTCCCAAGTGAAAGA
ACCTATTGGCGATCTTCTGAATCAGCAAGAAGAGATATACAGGATGATAA
ATCGATTGAAAGCGATGTTTTTCAGCGAGGATGTGCACTCAGAAAAAGAG
AGCGACGGAGAACGAGAACGAGACTTTGGTGCGGGAATTCTTGAAACTGT
GCAAAGCGGTTCAACGCTTCTCGACAACGTCATCCAGAGTCGTAGCGTTC
TTGAAGATTCAGTTTCAAAGATACGCAACCTAAAAGGATTGTTTGTGGAG
CAGACGAACTGCCTTCAAAAACGCCTGGATAAGATCTGTGGTTTGTTTGA
AATCTTATCCAGAGTGTTCAAGCAGTTTGTTGCCAATCTTCCGCGTCTCG
CTCGAGAAATCCGCCAATTTTTTGTTCCGACAGGGTGGAGAGCGTTTGTC
ATGAGACCTTCAGACGTTTTAATGAGCGTGCTCGCAAATTTTGAAGATCT
GAGGGCAACACTTCCCGATCCAGATTTGGTACAACCCCGCTCCACTAACC
CGACAGAAAACAGTGATTTGATCGGCAGGATGAAGGAAACAAAAGAGAAT
ATGGAGGAACTTATGCTCATCCCCTGCAGGTTGATAGATGGAATACAAGA
ACAAGACTTTCAACACCAAATAGTTGCCACCGTGAAGAATACCCTCGTGT
CCATGCTCGACGAGCTTACAGTCTCGGCTGCCGCACGTGTGAAAGACGGC
GTCGAGGGCATGCTCGGGCAGTTCGTAGACGGAGTTGAGAATTTATTCCC
GCAGAACAGTTCTTCAAGTTACAGTTCGGCTCCGACGAAGGACGAAAAGA
AGGGCGTTTTGGCAAAATTAATGGGTGAAGTACAAGGTGGGTGGTTTAAG
GCAATCTTCTAA
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protein sequence of Gchil1884.t1

>Gchil1884.t1 ID=Gchil1884.t1|Name=Gchil1884.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=504bp
MNSEPASSLDGLSGMYELVIDAVGKTQEQDTGVKEVRKRCLQNISTNLGD
SFATAKSTIVEGLDKSKSIAGEIDNLPEAVHKEVRDLPEKLKFPLLDKIR
DKVMTLLAQLHTMAENPIELYPRLLCGSIPVDPAKVTKFTKQYRILQQLN
DIDDGISQNDRSLSAPPKSSAEVIEKVVSSAQGLSDAVLKSINELLGLGE
DFEEIKEFEKTLSQVKEPIGDLLNQQEEIYRMINRLKAMFFSEDVHSEKE
SDGERERDFGAGILETVQSGSTLLDNVIQSRSVLEDSVSKIRNLKGLFVE
QTNCLQKRLDKICGLFEILSRVFKQFVANLPRLAREIRQFFVPTGWRAFV
MRPSDVLMSVLANFEDLRATLPDPDLVQPRSTNPTENSDLIGRMKETKEN
MEELMLIPCRLIDGIQEQDFQHQIVATVKNTLVSMLDELTVSAAARVKDG
VEGMLGQFVDGVENLFPQNSSSSYSSAPTKDEKKGVLAKLMGEVQGGWFK
AIF*
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mRNA from alignment at tig00004439_pilon:963358..964869-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1884.t1 ID=Gchil1884.t1|Name=Gchil1884.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00004439_pilon:963358..964869- (Gracilaria chilensis NLEC103_M9 male)
ATGAATAGCGAGCCCGCCTCCTCTTTAGATGGTTTATCCGGAATGTATGA
GCTGGTAATTGACGCAGTCGGTAAGACACAAGAACAAGATACCGGGGTTA
AAGAAGTCAGAAAGAGATGTTTACAAAACATCTCAACCAACCTTGGAGAC
AGTTTCGCGACAGCCAAATCAACAATCGTGGAGGGCTTGGATAAATCAAA
GAGTATTGCGGGAGAAATTGATAACCTACCAGAAGCCGTGCACAAGGAAG
TAAGGGACTTACCAGAGAAGCTGAAATTCCCTTTGCTGGACAAGATCCGA
GATAAGGTCATGACTCTACTAGCACAACTTCATACTATGGCTGAGAATCC
AATCGAGCTTTATCCTCGCCTTCTTTGTGGTAGCATTCCCGTTGACCCAG
CAAAAGTAACCAAGTTCACCAAACAATACCGTATTCTTCAACAACTTAAC
GACATAGATGATGGCATTTCTCAAAATGATCGCTCACTGTCTGCCCCGCC
GAAATCTTCCGCCGAAGTTATCGAAAAAGTGGTTTCGTCCGCTCAAGGTC
TTTCAGACGCCGTTCTGAAATCAATAAACGAGTTGTTGGGACTTGGTGAA
GACTTCGAGGAAATCAAAGAATTCGAGAAAACACTGTCCCAAGTGAAAGA
ACCTATTGGCGATCTTCTGAATCAGCAAGAAGAGATATACAGGATGATAA
ATCGATTGAAAGCGATGTTTTTCAGCGAGGATGTGCACTCAGAAAAAGAG
AGCGACGGAGAACGAGAACGAGACTTTGGTGCGGGAATTCTTGAAACTGT
GCAAAGCGGTTCAACGCTTCTCGACAACGTCATCCAGAGTCGTAGCGTTC
TTGAAGATTCAGTTTCAAAGATACGCAACCTAAAAGGATTGTTTGTGGAG
CAGACGAACTGCCTTCAAAAACGCCTGGATAAGATCTGTGGTTTGTTTGA
AATCTTATCCAGAGTGTTCAAGCAGTTTGTTGCCAATCTTCCGCGTCTCG
CTCGAGAAATCCGCCAATTTTTTGTTCCGACAGGGTGGAGAGCGTTTGTC
ATGAGACCTTCAGACGTTTTAATGAGCGTGCTCGCAAATTTTGAAGATCT
GAGGGCAACACTTCCCGATCCAGATTTGGTACAACCCCGCTCCACTAACC
CGACAGAAAACAGTGATTTGATCGGCAGGATGAAGGAAACAAAAGAGAAT
ATGGAGGAACTTATGCTCATCCCCTGCAGGTTGATAGATGGAATACAAGA
ACAAGACTTTCAACACCAAATAGTTGCCACCGTGAAGAATACCCTCGTGT
CCATGCTCGACGAGCTTACAGTCTCGGCTGCCGCACGTGTGAAAGACGGC
GTCGAGGGCATGCTCGGGCAGTTCGTAGACGGAGTTGAGAATTTATTCCC
GCAGAACAGTTCTTCAAGTTACAGTTCGGCTCCGACGAAGGACGAAAAGA
AGGGCGTTTTGGCAAAATTAATGGGTGAAGTACAAGGTGGGTGGTTTAAG
GCAATCTTCTAA
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Coding sequence (CDS) from alignment at tig00004439_pilon:963358..964869-

>Gchil1884.t1 ID=Gchil1884.t1|Name=Gchil1884.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1512bp|location=Sequence derived from alignment at tig00004439_pilon:963358..964869- (Gracilaria chilensis NLEC103_M9 male)
ATGAATAGCGAGCCCGCCTCCTCTTTAGATGGTTTATCCGGAATGTATGA
GCTGGTAATTGACGCAGTCGGTAAGACACAAGAACAAGATACCGGGGTTA
AAGAAGTCAGAAAGAGATGTTTACAAAACATCTCAACCAACCTTGGAGAC
AGTTTCGCGACAGCCAAATCAACAATCGTGGAGGGCTTGGATAAATCAAA
GAGTATTGCGGGAGAAATTGATAACCTACCAGAAGCCGTGCACAAGGAAG
TAAGGGACTTACCAGAGAAGCTGAAATTCCCTTTGCTGGACAAGATCCGA
GATAAGGTCATGACTCTACTAGCACAACTTCATACTATGGCTGAGAATCC
AATCGAGCTTTATCCTCGCCTTCTTTGTGGTAGCATTCCCGTTGACCCAG
CAAAAGTAACCAAGTTCACCAAACAATACCGTATTCTTCAACAACTTAAC
GACATAGATGATGGCATTTCTCAAAATGATCGCTCACTGTCTGCCCCGCC
GAAATCTTCCGCCGAAGTTATCGAAAAAGTGGTTTCGTCCGCTCAAGGTC
TTTCAGACGCCGTTCTGAAATCAATAAACGAGTTGTTGGGACTTGGTGAA
GACTTCGAGGAAATCAAAGAATTCGAGAAAACACTGTCCCAAGTGAAAGA
ACCTATTGGCGATCTTCTGAATCAGCAAGAAGAGATATACAGGATGATAA
ATCGATTGAAAGCGATGTTTTTCAGCGAGGATGTGCACTCAGAAAAAGAG
AGCGACGGAGAACGAGAACGAGACTTTGGTGCGGGAATTCTTGAAACTGT
GCAAAGCGGTTCAACGCTTCTCGACAACGTCATCCAGAGTCGTAGCGTTC
TTGAAGATTCAGTTTCAAAGATACGCAACCTAAAAGGATTGTTTGTGGAG
CAGACGAACTGCCTTCAAAAACGCCTGGATAAGATCTGTGGTTTGTTTGA
AATCTTATCCAGAGTGTTCAAGCAGTTTGTTGCCAATCTTCCGCGTCTCG
CTCGAGAAATCCGCCAATTTTTTGTTCCGACAGGGTGGAGAGCGTTTGTC
ATGAGACCTTCAGACGTTTTAATGAGCGTGCTCGCAAATTTTGAAGATCT
GAGGGCAACACTTCCCGATCCAGATTTGGTACAACCCCGCTCCACTAACC
CGACAGAAAACAGTGATTTGATCGGCAGGATGAAGGAAACAAAAGAGAAT
ATGGAGGAACTTATGCTCATCCCCTGCAGGTTGATAGATGGAATACAAGA
ACAAGACTTTCAACACCAAATAGTTGCCACCGTGAAGAATACCCTCGTGT
CCATGCTCGACGAGCTTACAGTCTCGGCTGCCGCACGTGTGAAAGACGGC
GTCGAGGGCATGCTCGGGCAGTTCGTAGACGGAGTTGAGAATTTATTCCC
GCAGAACAGTTCTTCAAGTTACAGTTCGGCTCCGACGAAGGACGAAAAGA
AGGGCGTTTTGGCAAAATTAATGGGTGAAGTACAAGGTGGGTGGTTTAAG
GCAATCTTCTAA
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