Gchil1948.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1948.t1
Unique Name	Gchil1948.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	263

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004439_pilon	contig	tig00004439_pilon:1266288..1267076 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7209.EFO27794.1
Preferred name	METTL1
PFAMs	Methyltransf_4
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K03439
GOs	GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234
Evalue	3.53e-70
EggNOG OGs	COG0220@1\|root,KOG3115@2759\|Eukaryota,38EJS@33154\|Opisthokonta,3BGW2@33208\|Metazoa,3CZXB@33213\|Bilateria,40CT5@6231\|Nematoda,1KVHR@119089\|Chromadorea
EC	2.1.1.33
Description	Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
COG category	J
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1948	Gchil1948	Gracilaria chilensis NLEC103_M9 male	gene	tig00004439_pilon 1266288..1267076 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1948.t1.stop1	Gchil1948.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004439_pilon 1266288..1266290 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1948.t1.CDS1	Gchil1948.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004439_pilon 1266288..1267076 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1948.t1.exon1	Gchil1948.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004439_pilon 1266288..1267076 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1948.t1.start1	Gchil1948.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004439_pilon 1267074..1267076 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1948.t1	Gchil1948.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004439_pilon 1266288..1267076 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004439_pilon:1266288..1267076-
coding sequence from alignment at tig00004439_pilon:1266288..1267076-

mRNA sequence

>Gchil1948.t1 ID=Gchil1948.t1|Name=Gchil1948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=263bp
MKEMSPTIEAPKKSNASDADEIAEQGGRVRWMVSKRDFRARAHSNPLNDG
LFDPPLTPSELPMGKLFDNAPSSKVDWCDVGCGYGGLLASLSTAFPHKSM
LGLEIRDRVADFCRQRVAEMRKQYPGNYGNVAFERSNAMKFLPNYFTKAS
LEKLFFCYPDPHFKRKKNRQRIISTQLLAEYAYVLEQGTGVAYVVTDVPE
LFEWMVARFEAHPLFERRSDEEHSADTVSAFVRDCTDEAQRVEKSDRKKQ
DASFRRLSNPHE*

spliced messenger RNA

>Gchil1948.t1 ID=Gchil1948.t1|Name=Gchil1948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00004439_pilon:1266288..1267076- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGAAATGTCTCCCACGATCGAAGCTCCCAAGAAATCGAACGCAAG
CGACGCCGATGAAATAGCAGAACAAGGAGGACGCGTACGATGGATGGTGA
GCAAGCGCGATTTTCGAGCGCGTGCTCACTCCAATCCTCTGAACGATGGG
CTTTTTGACCCGCCCCTCACCCCGTCCGAGCTGCCTATGGGCAAACTTTT
CGACAATGCACCTTCCTCTAAGGTGGACTGGTGCGATGTAGGCTGTGGGT
ACGGAGGCTTACTTGCAAGCCTCAGCACTGCATTCCCGCACAAAAGTATG
CTTGGGCTGGAAATTCGCGACCGCGTCGCCGATTTCTGTCGTCAGCGAGT
TGCCGAAATGCGCAAGCAATACCCTGGTAACTATGGAAATGTCGCCTTTG
AACGAAGCAACGCCATGAAGTTCCTCCCAAACTACTTTACCAAGGCGAGT
TTAGAGAAGCTTTTCTTTTGTTACCCAGATCCTCATTTCAAGCGGAAAAA
GAATCGCCAGCGCATTATTTCGACACAGTTGCTTGCGGAATACGCATACG
TGCTCGAGCAAGGAACGGGTGTGGCGTATGTGGTAACCGACGTGCCAGAG
CTTTTTGAATGGATGGTAGCGCGCTTTGAGGCGCACCCGTTGTTTGAAAG
GCGTTCCGATGAGGAACACTCAGCGGATACCGTGTCTGCTTTTGTGCGTG
ATTGCACAGATGAAGCTCAGCGCGTGGAGAAAAGCGACAGAAAGAAACAA
GACGCATCATTTCGTCGCTTATCGAACCCACACGAATAA

protein sequence of Gchil1948.t1

>Gchil1948.t1 ID=Gchil1948.t1|Name=Gchil1948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=263bp
MKEMSPTIEAPKKSNASDADEIAEQGGRVRWMVSKRDFRARAHSNPLNDG
LFDPPLTPSELPMGKLFDNAPSSKVDWCDVGCGYGGLLASLSTAFPHKSM
LGLEIRDRVADFCRQRVAEMRKQYPGNYGNVAFERSNAMKFLPNYFTKAS
LEKLFFCYPDPHFKRKKNRQRIISTQLLAEYAYVLEQGTGVAYVVTDVPE
LFEWMVARFEAHPLFERRSDEEHSADTVSAFVRDCTDEAQRVEKSDRKKQ
DASFRRLSNPHE*

mRNA from alignment at tig00004439_pilon:1266288..1267076-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1948.t1 ID=Gchil1948.t1|Name=Gchil1948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00004439_pilon:1266288..1267076- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGAAATGTCTCCCACGATCGAAGCTCCCAAGAAATCGAACGCAAG
CGACGCCGATGAAATAGCAGAACAAGGAGGACGCGTACGATGGATGGTGA
GCAAGCGCGATTTTCGAGCGCGTGCTCACTCCAATCCTCTGAACGATGGG
CTTTTTGACCCGCCCCTCACCCCGTCCGAGCTGCCTATGGGCAAACTTTT
CGACAATGCACCTTCCTCTAAGGTGGACTGGTGCGATGTAGGCTGTGGGT
ACGGAGGCTTACTTGCAAGCCTCAGCACTGCATTCCCGCACAAAAGTATG
CTTGGGCTGGAAATTCGCGACCGCGTCGCCGATTTCTGTCGTCAGCGAGT
TGCCGAAATGCGCAAGCAATACCCTGGTAACTATGGAAATGTCGCCTTTG
AACGAAGCAACGCCATGAAGTTCCTCCCAAACTACTTTACCAAGGCGAGT
TTAGAGAAGCTTTTCTTTTGTTACCCAGATCCTCATTTCAAGCGGAAAAA
GAATCGCCAGCGCATTATTTCGACACAGTTGCTTGCGGAATACGCATACG
TGCTCGAGCAAGGAACGGGTGTGGCGTATGTGGTAACCGACGTGCCAGAG
CTTTTTGAATGGATGGTAGCGCGCTTTGAGGCGCACCCGTTGTTTGAAAG
GCGTTCCGATGAGGAACACTCAGCGGATACCGTGTCTGCTTTTGTGCGTG
ATTGCACAGATGAAGCTCAGCGCGTGGAGAAAAGCGACAGAAAGAAACAA
GACGCATCATTTCGTCGCTTATCGAACCCACACGAATAA

Coding sequence (CDS) from alignment at tig00004439_pilon:1266288..1267076-

>Gchil1948.t1 ID=Gchil1948.t1|Name=Gchil1948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=789bp|location=Sequence derived from alignment at tig00004439_pilon:1266288..1267076- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGAAATGTCTCCCACGATCGAAGCTCCCAAGAAATCGAACGCAAG
CGACGCCGATGAAATAGCAGAACAAGGAGGACGCGTACGATGGATGGTGA
GCAAGCGCGATTTTCGAGCGCGTGCTCACTCCAATCCTCTGAACGATGGG
CTTTTTGACCCGCCCCTCACCCCGTCCGAGCTGCCTATGGGCAAACTTTT
CGACAATGCACCTTCCTCTAAGGTGGACTGGTGCGATGTAGGCTGTGGGT
ACGGAGGCTTACTTGCAAGCCTCAGCACTGCATTCCCGCACAAAAGTATG
CTTGGGCTGGAAATTCGCGACCGCGTCGCCGATTTCTGTCGTCAGCGAGT
TGCCGAAATGCGCAAGCAATACCCTGGTAACTATGGAAATGTCGCCTTTG
AACGAAGCAACGCCATGAAGTTCCTCCCAAACTACTTTACCAAGGCGAGT
TTAGAGAAGCTTTTCTTTTGTTACCCAGATCCTCATTTCAAGCGGAAAAA
GAATCGCCAGCGCATTATTTCGACACAGTTGCTTGCGGAATACGCATACG
TGCTCGAGCAAGGAACGGGTGTGGCGTATGTGGTAACCGACGTGCCAGAG
CTTTTTGAATGGATGGTAGCGCGCTTTGAGGCGCACCCGTTGTTTGAAAG
GCGTTCCGATGAGGAACACTCAGCGGATACCGTGTCTGCTTTTGTGCGTG
ATTGCACAGATGAAGCTCAGCGCGTGGAGAAAAGCGACAGAAAGAAACAA
GACGCATCATTTCGTCGCTTATCGAACCCACACGAATAA