Gchil1924.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1924.t1
Unique NameGchil1924.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length389
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1200414..1201580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65071.PYU1_T007023
PFAMsEAP30,Vps36_ESCRT-II
Max annot lvl121069|Pythiales
Evalue7.27e-33
EggNOG OGsKOG2760@1|root,KOG2760@2759|Eukaryota,1MBCU@121069|Pythiales
DescriptionVacuolar protein-sorting-associated protein. Source PGD
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1924Gchil1924Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1200414..1201580 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1924.t1.stop1Gchil1924.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1200414..1200416 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1924.t1.CDS1Gchil1924.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1200414..1201580 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1924.t1.exon1Gchil1924.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1200414..1201580 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1924.t1.start1Gchil1924.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1201578..1201580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1924.t1Gchil1924.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1200414..1201580 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1924.t1 ID=Gchil1924.t1|Name=Gchil1924.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=389bp
MEHFSPCELTAAGTLKTVEGEYTTASIEKTTLQTHDKKSTPFVKGLLNVT
THRIVWTDGRRTQAISAKLSSLPFSSPTEDKSSPLRARILLRYGRGVRVL
FESKTGAHDRDRCISAVTGACTRKEWDRIAEQKAKEALERERMGDYVSRR
AGLSGVQDRVRMQNLERREAINSGFSSIDKLREQAGDLMKIAGLFRTKES
SGEDNELLSMMAEMGIESPVTKELTGGNVAVYREELSRQLLGFLRMAVLR
VGGMMTLTDAYWVTMRNRATTELVSPEDFRAACEAIGRMKAGVQLRRLES
GVLALWIDSSKDSTGAQSLLDMVMKENSITALDVVRKRHIAVQRALAMLK
EAEALGYLARDETTDGLRFFANGFAVLLRNSRLGAAHK*
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spliced messenger RNA

>Gchil1924.t1 ID=Gchil1924.t1|Name=Gchil1924.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00004439_pilon:1200414..1201580- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACACTTTTCGCCATGCGAACTCACAGCAGCCGGTACGTTGAAAAC
AGTGGAAGGAGAGTACACAACAGCCAGCATCGAAAAAACAACATTACAAA
CACACGACAAGAAGTCGACGCCATTCGTAAAGGGGCTATTGAATGTGACG
ACGCACAGAATCGTATGGACGGATGGGCGTCGAACACAAGCAATTAGCGC
AAAGCTAAGCTCATTGCCGTTTTCGTCGCCAACAGAAGACAAGTCATCGC
CCCTTCGAGCTCGGATTCTGCTCCGCTACGGGCGGGGCGTGCGCGTGCTT
TTCGAGTCGAAAACGGGGGCTCACGATCGAGATCGGTGTATCAGCGCTGT
GACCGGGGCGTGTACGCGGAAGGAATGGGATCGAATTGCGGAGCAAAAGG
CAAAGGAGGCGTTGGAAAGAGAGAGAATGGGCGATTACGTTTCGAGAAGA
GCGGGGCTAAGCGGGGTGCAAGATCGCGTACGCATGCAAAACTTGGAAAG
GAGAGAAGCAATAAACAGTGGGTTTTCTTCTATCGATAAGCTTCGAGAAC
AGGCAGGAGATTTAATGAAGATTGCTGGGTTGTTTCGGACGAAGGAATCA
AGTGGAGAGGACAATGAATTGCTAAGCATGATGGCGGAGATGGGAATTGA
GTCGCCTGTAACAAAGGAGTTGACTGGTGGAAATGTGGCGGTGTACAGAG
AGGAATTGTCCCGACAGTTGTTGGGCTTCCTGCGCATGGCGGTTCTGCGA
GTGGGTGGTATGATGACGCTGACTGACGCGTACTGGGTGACGATGAGGAA
TCGCGCAACGACAGAGCTGGTTTCTCCGGAGGATTTCCGGGCGGCGTGCG
AGGCAATTGGACGAATGAAAGCGGGTGTACAGTTGAGGAGGTTGGAAAGT
GGAGTATTGGCTCTATGGATTGACAGCTCAAAAGACTCGACTGGGGCACA
AAGTTTACTTGACATGGTGATGAAAGAAAATAGCATCACAGCTCTAGACG
TAGTACGCAAACGACACATAGCCGTGCAGCGGGCGCTAGCAATGCTCAAG
GAGGCGGAGGCGCTCGGGTATCTAGCGCGAGACGAGACAACAGACGGACT
GCGCTTCTTCGCCAACGGATTCGCAGTACTGTTGCGCAACTCGCGTCTGG
GCGCGGCGCACAAGTAA
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protein sequence of Gchil1924.t1

>Gchil1924.t1 ID=Gchil1924.t1|Name=Gchil1924.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=389bp
MEHFSPCELTAAGTLKTVEGEYTTASIEKTTLQTHDKKSTPFVKGLLNVT
THRIVWTDGRRTQAISAKLSSLPFSSPTEDKSSPLRARILLRYGRGVRVL
FESKTGAHDRDRCISAVTGACTRKEWDRIAEQKAKEALERERMGDYVSRR
AGLSGVQDRVRMQNLERREAINSGFSSIDKLREQAGDLMKIAGLFRTKES
SGEDNELLSMMAEMGIESPVTKELTGGNVAVYREELSRQLLGFLRMAVLR
VGGMMTLTDAYWVTMRNRATTELVSPEDFRAACEAIGRMKAGVQLRRLES
GVLALWIDSSKDSTGAQSLLDMVMKENSITALDVVRKRHIAVQRALAMLK
EAEALGYLARDETTDGLRFFANGFAVLLRNSRLGAAHK*
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mRNA from alignment at tig00004439_pilon:1200414..1201580-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1924.t1 ID=Gchil1924.t1|Name=Gchil1924.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00004439_pilon:1200414..1201580- (Gracilaria chilensis NLEC103_M9 male)
ATGGAACACTTTTCGCCATGCGAACTCACAGCAGCCGGTACGTTGAAAAC
AGTGGAAGGAGAGTACACAACAGCCAGCATCGAAAAAACAACATTACAAA
CACACGACAAGAAGTCGACGCCATTCGTAAAGGGGCTATTGAATGTGACG
ACGCACAGAATCGTATGGACGGATGGGCGTCGAACACAAGCAATTAGCGC
AAAGCTAAGCTCATTGCCGTTTTCGTCGCCAACAGAAGACAAGTCATCGC
CCCTTCGAGCTCGGATTCTGCTCCGCTACGGGCGGGGCGTGCGCGTGCTT
TTCGAGTCGAAAACGGGGGCTCACGATCGAGATCGGTGTATCAGCGCTGT
GACCGGGGCGTGTACGCGGAAGGAATGGGATCGAATTGCGGAGCAAAAGG
CAAAGGAGGCGTTGGAAAGAGAGAGAATGGGCGATTACGTTTCGAGAAGA
GCGGGGCTAAGCGGGGTGCAAGATCGCGTACGCATGCAAAACTTGGAAAG
GAGAGAAGCAATAAACAGTGGGTTTTCTTCTATCGATAAGCTTCGAGAAC
AGGCAGGAGATTTAATGAAGATTGCTGGGTTGTTTCGGACGAAGGAATCA
AGTGGAGAGGACAATGAATTGCTAAGCATGATGGCGGAGATGGGAATTGA
GTCGCCTGTAACAAAGGAGTTGACTGGTGGAAATGTGGCGGTGTACAGAG
AGGAATTGTCCCGACAGTTGTTGGGCTTCCTGCGCATGGCGGTTCTGCGA
GTGGGTGGTATGATGACGCTGACTGACGCGTACTGGGTGACGATGAGGAA
TCGCGCAACGACAGAGCTGGTTTCTCCGGAGGATTTCCGGGCGGCGTGCG
AGGCAATTGGACGAATGAAAGCGGGTGTACAGTTGAGGAGGTTGGAAAGT
GGAGTATTGGCTCTATGGATTGACAGCTCAAAAGACTCGACTGGGGCACA
AAGTTTACTTGACATGGTGATGAAAGAAAATAGCATCACAGCTCTAGACG
TAGTACGCAAACGACACATAGCCGTGCAGCGGGCGCTAGCAATGCTCAAG
GAGGCGGAGGCGCTCGGGTATCTAGCGCGAGACGAGACAACAGACGGACT
GCGCTTCTTCGCCAACGGATTCGCAGTACTGTTGCGCAACTCGCGTCTGG
GCGCGGCGCACAAGTAA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1200414..1201580-

>Gchil1924.t1 ID=Gchil1924.t1|Name=Gchil1924.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1167bp|location=Sequence derived from alignment at tig00004439_pilon:1200414..1201580- (Gracilaria chilensis NLEC103_M9 male)
ATGGAACACTTTTCGCCATGCGAACTCACAGCAGCCGGTACGTTGAAAAC
AGTGGAAGGAGAGTACACAACAGCCAGCATCGAAAAAACAACATTACAAA
CACACGACAAGAAGTCGACGCCATTCGTAAAGGGGCTATTGAATGTGACG
ACGCACAGAATCGTATGGACGGATGGGCGTCGAACACAAGCAATTAGCGC
AAAGCTAAGCTCATTGCCGTTTTCGTCGCCAACAGAAGACAAGTCATCGC
CCCTTCGAGCTCGGATTCTGCTCCGCTACGGGCGGGGCGTGCGCGTGCTT
TTCGAGTCGAAAACGGGGGCTCACGATCGAGATCGGTGTATCAGCGCTGT
GACCGGGGCGTGTACGCGGAAGGAATGGGATCGAATTGCGGAGCAAAAGG
CAAAGGAGGCGTTGGAAAGAGAGAGAATGGGCGATTACGTTTCGAGAAGA
GCGGGGCTAAGCGGGGTGCAAGATCGCGTACGCATGCAAAACTTGGAAAG
GAGAGAAGCAATAAACAGTGGGTTTTCTTCTATCGATAAGCTTCGAGAAC
AGGCAGGAGATTTAATGAAGATTGCTGGGTTGTTTCGGACGAAGGAATCA
AGTGGAGAGGACAATGAATTGCTAAGCATGATGGCGGAGATGGGAATTGA
GTCGCCTGTAACAAAGGAGTTGACTGGTGGAAATGTGGCGGTGTACAGAG
AGGAATTGTCCCGACAGTTGTTGGGCTTCCTGCGCATGGCGGTTCTGCGA
GTGGGTGGTATGATGACGCTGACTGACGCGTACTGGGTGACGATGAGGAA
TCGCGCAACGACAGAGCTGGTTTCTCCGGAGGATTTCCGGGCGGCGTGCG
AGGCAATTGGACGAATGAAAGCGGGTGTACAGTTGAGGAGGTTGGAAAGT
GGAGTATTGGCTCTATGGATTGACAGCTCAAAAGACTCGACTGGGGCACA
AAGTTTACTTGACATGGTGATGAAAGAAAATAGCATCACAGCTCTAGACG
TAGTACGCAAACGACACATAGCCGTGCAGCGGGCGCTAGCAATGCTCAAG
GAGGCGGAGGCGCTCGGGTATCTAGCGCGAGACGAGACAACAGACGGACT
GCGCTTCTTCGCCAACGGATTCGCAGTACTGTTGCGCAACTCGCGTCTGG
GCGCGGCGCACAAGTAA
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