Gchil2021.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2021.t1
Unique Name	Gchil2021.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	361

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004439_pilon	contig	tig00004439_pilon:1759341..1760423 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX46056
PFAMs	Methyltransf_21
Max annot lvl	2759\|Eukaryota
Evalue	2.67e-19
EggNOG OGs	2E06X@1\|root,2S7NC@2759\|Eukaryota
Description	Methyltransferase FkbM domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2021	Gchil2021	Gracilaria chilensis NLEC103_M9 male	gene	tig00004439_pilon 1759341..1760423 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2021.t1.start1	Gchil2021.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004439_pilon 1759341..1759343 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2021.t1.CDS1	Gchil2021.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004439_pilon 1759341..1760423 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2021.t1.exon1	Gchil2021.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004439_pilon 1759341..1760423 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2021.t1.stop1	Gchil2021.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004439_pilon 1760421..1760423 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2021.t1	Gchil2021.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004439_pilon 1759341..1760423 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004439_pilon:1759341..1760423+
coding sequence from alignment at tig00004439_pilon:1759341..1760423+

mRNA sequence

>Gchil2021.t1 ID=Gchil2021.t1|Name=Gchil2021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=361bp
MALMSIVRVVVFIALGLYLIPTFCNSSIINSKTSSSTRDSPTSPSLLADD
LKADWLPSEDVTFVLQQDMNATFFFVEDDPKHGIDPVRSFLLRAEENVRG
LFHHLLYRPGCETRENVEKWGNSCPPVDGRREQVVIDVGCNRGWYSLMAA
AYGHRVYAFDPQPHCRTLLSASVLVNGFHDLVAYKHAFVTDKSGETMQVR
RRTGCMGGFPNNNHAGYADKFRKPLDRFPGANDTVTVEGISLDDLFDAER
HDVVLLKMDVEGFESHALASGRKLLERGAVRNIVLEFNLPMMSRQQEGIE
RMKERSITLVRQLMEDYGYKSKGSHKGSWHKQQEMTTEEWKQLFAKERDM
FVTIDAWFYK*

spliced messenger RNA

>Gchil2021.t1 ID=Gchil2021.t1|Name=Gchil2021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00004439_pilon:1759341..1760423+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCTGATGTCGATTGTACGAGTTGTTGTTTTCATCGCTTTGGGACT
CTATCTTATTCCCACATTTTGCAACTCATCCATAATCAACTCAAAGACTT
CAAGCTCAACTCGAGATTCTCCTACTTCACCGTCATTGCTAGCTGATGAT
CTTAAAGCCGATTGGCTTCCATCTGAAGACGTGACTTTCGTACTACAGCA
AGACATGAACGCAACTTTCTTTTTTGTCGAGGATGACCCAAAACATGGCA
TTGACCCAGTACGGTCATTTCTGCTGCGCGCAGAAGAAAACGTCAGAGGT
CTCTTTCATCACTTATTGTATCGACCAGGGTGTGAGACACGTGAAAATGT
GGAGAAGTGGGGAAATTCATGTCCTCCAGTTGACGGACGGCGAGAACAAG
TGGTGATTGACGTTGGTTGCAACCGCGGTTGGTATAGTTTGATGGCGGCG
GCGTATGGTCATCGCGTCTACGCATTTGATCCACAGCCGCATTGCCGGAC
TTTACTTTCAGCGTCAGTGCTCGTCAATGGCTTCCATGATCTCGTTGCGT
ACAAGCACGCGTTTGTCACTGACAAAAGCGGGGAAACAATGCAAGTGCGA
CGTCGTACAGGATGCATGGGGGGATTCCCAAACAACAATCACGCAGGGTA
TGCGGACAAATTCAGAAAGCCCTTGGATCGATTTCCGGGTGCAAACGATA
CTGTGACGGTAGAAGGAATATCTCTTGATGATTTGTTTGACGCCGAAAGA
CATGATGTGGTGCTGCTGAAGATGGATGTTGAAGGATTCGAGAGCCATGC
ATTGGCAAGTGGCAGAAAATTACTAGAAAGAGGTGCGGTCCGGAATATTG
TACTTGAATTCAATCTACCGATGATGTCCAGACAACAAGAAGGTATTGAA
CGTATGAAGGAACGGTCGATTACGCTTGTTCGGCAATTGATGGAAGATTA
TGGATACAAGTCAAAGGGATCACACAAGGGAAGTTGGCATAAACAGCAAG
AAATGACGACAGAGGAATGGAAACAGTTATTTGCAAAAGAACGCGACATG
TTTGTGACGATTGACGCGTGGTTTTATAAATGA

protein sequence of Gchil2021.t1

>Gchil2021.t1 ID=Gchil2021.t1|Name=Gchil2021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=361bp
MALMSIVRVVVFIALGLYLIPTFCNSSIINSKTSSSTRDSPTSPSLLADD
LKADWLPSEDVTFVLQQDMNATFFFVEDDPKHGIDPVRSFLLRAEENVRG
LFHHLLYRPGCETRENVEKWGNSCPPVDGRREQVVIDVGCNRGWYSLMAA
AYGHRVYAFDPQPHCRTLLSASVLVNGFHDLVAYKHAFVTDKSGETMQVR
RRTGCMGGFPNNNHAGYADKFRKPLDRFPGANDTVTVEGISLDDLFDAER
HDVVLLKMDVEGFESHALASGRKLLERGAVRNIVLEFNLPMMSRQQEGIE
RMKERSITLVRQLMEDYGYKSKGSHKGSWHKQQEMTTEEWKQLFAKERDM
FVTIDAWFYK*

mRNA from alignment at tig00004439_pilon:1759341..1760423+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2021.t1 ID=Gchil2021.t1|Name=Gchil2021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00004439_pilon:1759341..1760423+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCTGATGTCGATTGTACGAGTTGTTGTTTTCATCGCTTTGGGACT
CTATCTTATTCCCACATTTTGCAACTCATCCATAATCAACTCAAAGACTT
CAAGCTCAACTCGAGATTCTCCTACTTCACCGTCATTGCTAGCTGATGAT
CTTAAAGCCGATTGGCTTCCATCTGAAGACGTGACTTTCGTACTACAGCA
AGACATGAACGCAACTTTCTTTTTTGTCGAGGATGACCCAAAACATGGCA
TTGACCCAGTACGGTCATTTCTGCTGCGCGCAGAAGAAAACGTCAGAGGT
CTCTTTCATCACTTATTGTATCGACCAGGGTGTGAGACACGTGAAAATGT
GGAGAAGTGGGGAAATTCATGTCCTCCAGTTGACGGACGGCGAGAACAAG
TGGTGATTGACGTTGGTTGCAACCGCGGTTGGTATAGTTTGATGGCGGCG
GCGTATGGTCATCGCGTCTACGCATTTGATCCACAGCCGCATTGCCGGAC
TTTACTTTCAGCGTCAGTGCTCGTCAATGGCTTCCATGATCTCGTTGCGT
ACAAGCACGCGTTTGTCACTGACAAAAGCGGGGAAACAATGCAAGTGCGA
CGTCGTACAGGATGCATGGGGGGATTCCCAAACAACAATCACGCAGGGTA
TGCGGACAAATTCAGAAAGCCCTTGGATCGATTTCCGGGTGCAAACGATA
CTGTGACGGTAGAAGGAATATCTCTTGATGATTTGTTTGACGCCGAAAGA
CATGATGTGGTGCTGCTGAAGATGGATGTTGAAGGATTCGAGAGCCATGC
ATTGGCAAGTGGCAGAAAATTACTAGAAAGAGGTGCGGTCCGGAATATTG
TACTTGAATTCAATCTACCGATGATGTCCAGACAACAAGAAGGTATTGAA
CGTATGAAGGAACGGTCGATTACGCTTGTTCGGCAATTGATGGAAGATTA
TGGATACAAGTCAAAGGGATCACACAAGGGAAGTTGGCATAAACAGCAAG
AAATGACGACAGAGGAATGGAAACAGTTATTTGCAAAAGAACGCGACATG
TTTGTGACGATTGACGCGTGGTTTTATAAATGA

Coding sequence (CDS) from alignment at tig00004439_pilon:1759341..1760423+

>Gchil2021.t1 ID=Gchil2021.t1|Name=Gchil2021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1083bp|location=Sequence derived from alignment at tig00004439_pilon:1759341..1760423+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCTGATGTCGATTGTACGAGTTGTTGTTTTCATCGCTTTGGGACT
CTATCTTATTCCCACATTTTGCAACTCATCCATAATCAACTCAAAGACTT
CAAGCTCAACTCGAGATTCTCCTACTTCACCGTCATTGCTAGCTGATGAT
CTTAAAGCCGATTGGCTTCCATCTGAAGACGTGACTTTCGTACTACAGCA
AGACATGAACGCAACTTTCTTTTTTGTCGAGGATGACCCAAAACATGGCA
TTGACCCAGTACGGTCATTTCTGCTGCGCGCAGAAGAAAACGTCAGAGGT
CTCTTTCATCACTTATTGTATCGACCAGGGTGTGAGACACGTGAAAATGT
GGAGAAGTGGGGAAATTCATGTCCTCCAGTTGACGGACGGCGAGAACAAG
TGGTGATTGACGTTGGTTGCAACCGCGGTTGGTATAGTTTGATGGCGGCG
GCGTATGGTCATCGCGTCTACGCATTTGATCCACAGCCGCATTGCCGGAC
TTTACTTTCAGCGTCAGTGCTCGTCAATGGCTTCCATGATCTCGTTGCGT
ACAAGCACGCGTTTGTCACTGACAAAAGCGGGGAAACAATGCAAGTGCGA
CGTCGTACAGGATGCATGGGGGGATTCCCAAACAACAATCACGCAGGGTA
TGCGGACAAATTCAGAAAGCCCTTGGATCGATTTCCGGGTGCAAACGATA
CTGTGACGGTAGAAGGAATATCTCTTGATGATTTGTTTGACGCCGAAAGA
CATGATGTGGTGCTGCTGAAGATGGATGTTGAAGGATTCGAGAGCCATGC
ATTGGCAAGTGGCAGAAAATTACTAGAAAGAGGTGCGGTCCGGAATATTG
TACTTGAATTCAATCTACCGATGATGTCCAGACAACAAGAAGGTATTGAA
CGTATGAAGGAACGGTCGATTACGCTTGTTCGGCAATTGATGGAAGATTA
TGGATACAAGTCAAAGGGATCACACAAGGGAAGTTGGCATAAACAGCAAG
AAATGACGACAGAGGAATGGAAACAGTTATTTGCAAAAGAACGCGACATG
TTTGTGACGATTGACGCGTGGTTTTATAAATGA