Gchil1904.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1904.t1
Unique NameGchil1904.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1087879..1089162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703384.1
Preferred nameADSS
PFAMsAdenylsucc_synt
Max annot lvl2759|Eukaryota
KEGG rclassRC00458,RC00459
KEGG koko:K01939
KEGG ReactionR01135
KEGG Pathwayko00230,ko00250,ko01100,map00230,map00250,map01100
KEGG ModuleM00049
GOsGO:0000166,GO:0001882,GO:0001883,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003779,GO:0003824,GO:0003924,GO:0004019,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006106,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006520,GO:0006531,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007517,GO:0007519,GO:0008092,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009888,GO:0009987,GO:0010035,GO:0010038,GO:0014706,GO:0014902,GO:0014904,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016874,GO:0016879,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0019001,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019752,GO:0030154,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034404,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042221,GO:0042278,GO:0042301,GO:0042451,GO:0042455,GO:0042592,GO:0042692,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043565,GO:0043648,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046033,GO:0046040,GO:0046085,GO:0046086,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0046686,GO:0046716,GO:0046983,GO:0048046,GO:0048468,GO:0048513,GO:0048731,GO:0048741,GO:0048747,GO:0048856,GO:0048869,GO:0050896,GO:0051015,GO:0051146,GO:0051716,GO:0055001,GO:0055002,GO:0055086,GO:0060249,GO:0060537,GO:0060538,GO:0061061,GO:0061483,GO:0065007,GO:0065008,GO:0070887,GO:0071241,GO:0071248,GO:0071276,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901657,GO:1901659,GO:1990837
Evalue9.99e-185
EggNOG OGsCOG0104@1|root,KOG1355@2759|Eukaryota
EC6.3.4.4
Descriptionadenylosuccinate synthase activity
COG categoryF
BiGG ReactioniRC1080.CRv4_Au5_s17_g7726_t1
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1904Gchil1904Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1087879..1089162 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1904.t1.stop1Gchil1904.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1087879..1087881 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1904.t1.CDS1Gchil1904.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1087879..1089162 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1904.t1.exon1Gchil1904.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1087879..1089162 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1904.t1.start1Gchil1904.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1089160..1089162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1904.t1Gchil1904.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1087879..1089162 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1904.t1 ID=Gchil1904.t1|Name=Gchil1904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=428bp
MKPGGEVLVVLGAQWGDEGKGKLIDILSKDYDILARAAGGANAGHTIVVD
SVKYAFHLLPSGLLHEHVQAVIGNGVVLHVPKFMSELQELREKGVDATPR
IRISDRCHLLFDYHQIVDGLREVERGKAKIGTTGRGIGPCYSSKANRTNI
RVGDLRNFRSFPASFRRSLASKHKRFHNFDYNVRNEIANYYEYAKQLEPC
ITDTVAVLNNGITNKSHAVLVEGANAALLDIDFGTYPFVTSSNCTAGGVS
TGLGIPPRAINQVIAVVKAYTTRVGEGPFPTELHDHLGETLQKKGHEYGT
TTARPRRCGWLDAFMLQYTHSINGYTQICLTKLDVLSHFETLKIGVSYNV
RGRKMTYYPASLKLLGEAQVEYVEMPGWKGVDISGVRTFEDLPENAQQYV
LKIEELIKVPITSIGVGPSREAIIFRE*
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spliced messenger RNA

>Gchil1904.t1 ID=Gchil1904.t1|Name=Gchil1904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00004439_pilon:1087879..1089162- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCTGGAGGAGAAGTGCTGGTTGTGTTGGGCGCTCAATGGGGAGA
TGAGGGGAAGGGAAAGTTGATAGACATTCTCAGCAAGGATTATGATATTC
TCGCTCGCGCGGCGGGCGGCGCCAACGCTGGACATACCATCGTCGTCGAT
TCCGTCAAGTACGCTTTTCATCTGCTTCCGTCCGGCCTGCTGCACGAGCA
TGTACAAGCTGTCATCGGGAACGGCGTTGTTCTACATGTACCCAAGTTCA
TGTCCGAATTGCAGGAGCTGCGAGAAAAGGGGGTCGATGCGACGCCTCGC
ATTCGAATTTCTGATCGCTGCCACCTTCTGTTCGACTACCACCAGATTGT
GGACGGTCTTCGGGAAGTGGAGAGGGGAAAGGCCAAGATCGGAACCACCG
GTAGAGGCATTGGCCCATGTTACTCGTCGAAAGCCAACCGCACCAACATA
CGTGTCGGCGATCTGCGCAACTTTCGTTCCTTTCCGGCTTCATTCAGGAG
AAGTTTGGCTTCGAAACACAAGCGTTTTCATAATTTTGATTACAATGTAC
GAAACGAAATTGCCAACTATTACGAATACGCCAAGCAACTTGAACCCTGC
ATCACCGACACTGTGGCCGTGCTCAACAATGGCATCACCAACAAGTCACA
TGCCGTGCTCGTCGAGGGAGCCAATGCAGCATTGCTCGATATCGACTTTG
GAACCTACCCGTTTGTCACGTCCAGCAACTGTACAGCTGGTGGTGTCTCT
ACAGGTCTTGGAATCCCCCCCCGCGCCATCAACCAAGTCATTGCCGTCGT
CAAGGCCTACACCACGCGCGTAGGAGAAGGCCCGTTTCCAACGGAACTAC
ACGATCACTTGGGCGAGACACTGCAAAAGAAAGGCCACGAGTACGGCACA
ACCACAGCTCGGCCAAGGAGATGTGGTTGGTTGGATGCCTTCATGCTGCA
ATACACGCATTCCATAAACGGCTACACTCAGATCTGCCTCACAAAACTTG
ACGTTCTATCACACTTTGAAACTCTCAAGATCGGCGTTTCGTACAACGTT
CGTGGCCGAAAGATGACCTATTACCCAGCATCTCTCAAACTTCTAGGTGA
GGCTCAAGTGGAATATGTTGAGATGCCAGGGTGGAAAGGCGTCGACATTT
CAGGTGTGCGAACTTTTGAAGATTTGCCCGAGAATGCCCAGCAATACGTT
TTAAAAATTGAAGAACTGATCAAGGTTCCCATCACATCTATCGGCGTTGG
CCCAAGTCGCGAGGCAATCATATTTCGAGAGTAA
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protein sequence of Gchil1904.t1

>Gchil1904.t1 ID=Gchil1904.t1|Name=Gchil1904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=428bp
MKPGGEVLVVLGAQWGDEGKGKLIDILSKDYDILARAAGGANAGHTIVVD
SVKYAFHLLPSGLLHEHVQAVIGNGVVLHVPKFMSELQELREKGVDATPR
IRISDRCHLLFDYHQIVDGLREVERGKAKIGTTGRGIGPCYSSKANRTNI
RVGDLRNFRSFPASFRRSLASKHKRFHNFDYNVRNEIANYYEYAKQLEPC
ITDTVAVLNNGITNKSHAVLVEGANAALLDIDFGTYPFVTSSNCTAGGVS
TGLGIPPRAINQVIAVVKAYTTRVGEGPFPTELHDHLGETLQKKGHEYGT
TTARPRRCGWLDAFMLQYTHSINGYTQICLTKLDVLSHFETLKIGVSYNV
RGRKMTYYPASLKLLGEAQVEYVEMPGWKGVDISGVRTFEDLPENAQQYV
LKIEELIKVPITSIGVGPSREAIIFRE*
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mRNA from alignment at tig00004439_pilon:1087879..1089162-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1904.t1 ID=Gchil1904.t1|Name=Gchil1904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00004439_pilon:1087879..1089162- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCCTGGAGGAGAAGTGCTGGTTGTGTTGGGCGCTCAATGGGGAGA
TGAGGGGAAGGGAAAGTTGATAGACATTCTCAGCAAGGATTATGATATTC
TCGCTCGCGCGGCGGGCGGCGCCAACGCTGGACATACCATCGTCGTCGAT
TCCGTCAAGTACGCTTTTCATCTGCTTCCGTCCGGCCTGCTGCACGAGCA
TGTACAAGCTGTCATCGGGAACGGCGTTGTTCTACATGTACCCAAGTTCA
TGTCCGAATTGCAGGAGCTGCGAGAAAAGGGGGTCGATGCGACGCCTCGC
ATTCGAATTTCTGATCGCTGCCACCTTCTGTTCGACTACCACCAGATTGT
GGACGGTCTTCGGGAAGTGGAGAGGGGAAAGGCCAAGATCGGAACCACCG
GTAGAGGCATTGGCCCATGTTACTCGTCGAAAGCCAACCGCACCAACATA
CGTGTCGGCGATCTGCGCAACTTTCGTTCCTTTCCGGCTTCATTCAGGAG
AAGTTTGGCTTCGAAACACAAGCGTTTTCATAATTTTGATTACAATGTAC
GAAACGAAATTGCCAACTATTACGAATACGCCAAGCAACTTGAACCCTGC
ATCACCGACACTGTGGCCGTGCTCAACAATGGCATCACCAACAAGTCACA
TGCCGTGCTCGTCGAGGGAGCCAATGCAGCATTGCTCGATATCGACTTTG
GAACCTACCCGTTTGTCACGTCCAGCAACTGTACAGCTGGTGGTGTCTCT
ACAGGTCTTGGAATCCCCCCCCGCGCCATCAACCAAGTCATTGCCGTCGT
CAAGGCCTACACCACGCGCGTAGGAGAAGGCCCGTTTCCAACGGAACTAC
ACGATCACTTGGGCGAGACACTGCAAAAGAAAGGCCACGAGTACGGCACA
ACCACAGCTCGGCCAAGGAGATGTGGTTGGTTGGATGCCTTCATGCTGCA
ATACACGCATTCCATAAACGGCTACACTCAGATCTGCCTCACAAAACTTG
ACGTTCTATCACACTTTGAAACTCTCAAGATCGGCGTTTCGTACAACGTT
CGTGGCCGAAAGATGACCTATTACCCAGCATCTCTCAAACTTCTAGGTGA
GGCTCAAGTGGAATATGTTGAGATGCCAGGGTGGAAAGGCGTCGACATTT
CAGGTGTGCGAACTTTTGAAGATTTGCCCGAGAATGCCCAGCAATACGTT
TTAAAAATTGAAGAACTGATCAAGGTTCCCATCACATCTATCGGCGTTGG
CCCAAGTCGCGAGGCAATCATATTTCGAGAGTAA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1087879..1089162-

>Gchil1904.t1 ID=Gchil1904.t1|Name=Gchil1904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1284bp|location=Sequence derived from alignment at tig00004439_pilon:1087879..1089162- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCCTGGAGGAGAAGTGCTGGTTGTGTTGGGCGCTCAATGGGGAGA
TGAGGGGAAGGGAAAGTTGATAGACATTCTCAGCAAGGATTATGATATTC
TCGCTCGCGCGGCGGGCGGCGCCAACGCTGGACATACCATCGTCGTCGAT
TCCGTCAAGTACGCTTTTCATCTGCTTCCGTCCGGCCTGCTGCACGAGCA
TGTACAAGCTGTCATCGGGAACGGCGTTGTTCTACATGTACCCAAGTTCA
TGTCCGAATTGCAGGAGCTGCGAGAAAAGGGGGTCGATGCGACGCCTCGC
ATTCGAATTTCTGATCGCTGCCACCTTCTGTTCGACTACCACCAGATTGT
GGACGGTCTTCGGGAAGTGGAGAGGGGAAAGGCCAAGATCGGAACCACCG
GTAGAGGCATTGGCCCATGTTACTCGTCGAAAGCCAACCGCACCAACATA
CGTGTCGGCGATCTGCGCAACTTTCGTTCCTTTCCGGCTTCATTCAGGAG
AAGTTTGGCTTCGAAACACAAGCGTTTTCATAATTTTGATTACAATGTAC
GAAACGAAATTGCCAACTATTACGAATACGCCAAGCAACTTGAACCCTGC
ATCACCGACACTGTGGCCGTGCTCAACAATGGCATCACCAACAAGTCACA
TGCCGTGCTCGTCGAGGGAGCCAATGCAGCATTGCTCGATATCGACTTTG
GAACCTACCCGTTTGTCACGTCCAGCAACTGTACAGCTGGTGGTGTCTCT
ACAGGTCTTGGAATCCCCCCCCGCGCCATCAACCAAGTCATTGCCGTCGT
CAAGGCCTACACCACGCGCGTAGGAGAAGGCCCGTTTCCAACGGAACTAC
ACGATCACTTGGGCGAGACACTGCAAAAGAAAGGCCACGAGTACGGCACA
ACCACAGCTCGGCCAAGGAGATGTGGTTGGTTGGATGCCTTCATGCTGCA
ATACACGCATTCCATAAACGGCTACACTCAGATCTGCCTCACAAAACTTG
ACGTTCTATCACACTTTGAAACTCTCAAGATCGGCGTTTCGTACAACGTT
CGTGGCCGAAAGATGACCTATTACCCAGCATCTCTCAAACTTCTAGGTGA
GGCTCAAGTGGAATATGTTGAGATGCCAGGGTGGAAAGGCGTCGACATTT
CAGGTGTGCGAACTTTTGAAGATTTGCCCGAGAATGCCCAGCAATACGTT
TTAAAAATTGAAGAACTGATCAAGGTTCCCATCACATCTATCGGCGTTGG
CCCAAGTCGCGAGGCAATCATATTTCGAGAGTAA
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