Gchil1966.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1966.t1
Unique Name	Gchil1966.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	647

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004439_pilon	contig	tig00004439_pilon:1303345..1305285 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708801.1
Preferred name	lztr1
PFAMs	BTB,F-box-like,Jacalin,Kelch_1,Kelch_2,Kelch_3,Kelch_4,Kelch_5,PAS_9
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12115,ko:K12116,ko:K12117
KEGG Pathway	ko04712,map04712
GOs	GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0007600,GO:0008150,GO:0015030,GO:0016604,GO:0019233,GO:0031974,GO:0031981,GO:0032501,GO:0042752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0050789,GO:0050877,GO:0065007,GO:0070013
Evalue	3.63e-131
EggNOG OGs	2CMFB@1\|root,2QQ74@2759\|Eukaryota
Description	Galactose oxidase, central domain
COG category	S
BRITE	ko00000,ko00001,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1966	Gchil1966	Gracilaria chilensis NLEC103_M9 male	gene	tig00004439_pilon 1303345..1305285 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1966.t1.start1	Gchil1966.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004439_pilon 1303345..1303347 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1966.t1.CDS1	Gchil1966.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004439_pilon 1303345..1305285 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1966.t1.exon1	Gchil1966.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004439_pilon 1303345..1305285 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1966.t1.stop1	Gchil1966.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004439_pilon 1305283..1305285 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1966.t1	Gchil1966.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004439_pilon 1303345..1305285 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004439_pilon:1303345..1305285+
coding sequence from alignment at tig00004439_pilon:1303345..1305285+

mRNA sequence

>Gchil1966.t1 ID=Gchil1966.t1|Name=Gchil1966.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=647bp
MHRHSFPTFRSSSNLVADPSRRSLPASSDTIPEWVINESMDDRVPCQRAG
HSLASFEDKIYLFGGCCSYYNSAEAMHDTGEAPEVAGELLHFNTLHEYST
DTSKWRLLHPGGEIRLRSRLVPKERRHASLVVYGHSLYLYGGFDRRDHVL
SDLWEFRLDEKKWVLISGNPDSCNYSVYEPLPVVVRVPTPVARAEHTAVV
YKHRMIVFGGYDGKKKLNDSFVYDFATRRWSSPFPARQGAPSRRCKHSAV
LYKGKMYVVGGFQYKDGDNYALTDMHALDLESFTWDNFDIDESAPQALQG
HKAVVCGETMYILGGKVRPRSVRHSMPAAMPDQTSPVGIIPSNMDISVTH
VNLATLIPQESNGSLQIPPDYMPDETRSSGLNHVVFTYDFTTTAWSVLRT
IGMPPTPRQLHAVVPIQTSDRLCSIFVFGGTDRSKQRYYNDLVELRGILS
PNDLYQKCETCTSTRALLNNDMFSDVKFVVEGKTIPAHKCILYARSEYFR
SMFDSSMRETSASDIPIPDVSYEVFHGVLDYLYSGEVRIRDGQIAVELLK
AADMFRIEGLKNRCAERVEQGVTPENASFICQVADRHNSSNLKNYCIAYI
VQNFRHVIKTESFEDLMTQDAGGLGREILTAFSDSTSYVGLKRARS*

spliced messenger RNA

>Gchil1966.t1 ID=Gchil1966.t1|Name=Gchil1966.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1941bp|location=Sequence derived from alignment at tig00004439_pilon:1303345..1305285+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCGTCACAGCTTTCCCACATTTCGATCCTCGTCAAATCTTGTTGC
TGATCCTTCACGCCGATCCCTGCCCGCGTCGTCCGATACCATTCCCGAGT
GGGTTATCAATGAGTCCATGGATGATAGAGTACCGTGCCAGAGAGCAGGG
CACTCGCTCGCATCGTTCGAGGACAAAATATATTTGTTCGGAGGCTGCTG
CAGCTACTACAACAGCGCAGAAGCGATGCACGACACAGGCGAAGCACCAG
AGGTAGCAGGAGAGCTCCTCCATTTCAACACACTTCACGAGTACTCTACG
GATACAAGCAAATGGCGCCTACTCCACCCTGGTGGTGAAATTCGACTTCG
CTCCAGGCTTGTCCCGAAAGAGCGCCGTCATGCGTCACTTGTCGTGTACG
GCCATTCTCTTTATCTGTACGGTGGATTCGACCGTAGAGACCACGTCCTG
TCTGATCTTTGGGAGTTTCGTCTTGATGAAAAGAAGTGGGTATTGATTTC
TGGAAATCCCGACTCGTGTAATTATAGCGTGTATGAACCATTGCCGGTTG
TCGTACGGGTACCCACTCCCGTTGCGCGGGCAGAACATACTGCAGTCGTC
TACAAACATCGGATGATAGTATTTGGTGGCTATGACGGAAAAAAGAAACT
TAACGATTCTTTCGTGTATGACTTTGCTACTCGAAGGTGGTCATCCCCCT
TTCCGGCGCGTCAGGGTGCACCAAGCCGACGCTGTAAACATTCCGCCGTA
CTGTACAAGGGTAAAATGTATGTTGTCGGGGGCTTTCAGTACAAAGATGG
AGATAACTATGCACTCACCGACATGCATGCTCTTGACCTCGAGTCCTTTA
CGTGGGACAACTTCGACATCGACGAGTCGGCACCTCAAGCGTTACAAGGG
CACAAGGCTGTTGTCTGTGGAGAAACCATGTATATTCTGGGAGGGAAAGT
ACGACCGCGTAGCGTGAGACACAGTATGCCGGCTGCTATGCCCGATCAAA
CATCTCCAGTAGGTATCATTCCGTCTAATATGGACATCAGTGTAACACAT
GTGAACCTTGCAACCCTGATACCCCAAGAAAGTAATGGATCCCTTCAAAT
CCCTCCAGACTACATGCCGGACGAGACGCGAAGTTCCGGCCTTAACCATG
TCGTGTTTACGTACGATTTCACAACAACGGCGTGGTCGGTGCTTCGAACG
ATCGGCATGCCTCCGACTCCACGTCAGTTGCACGCTGTAGTCCCCATTCA
AACAAGCGACCGTCTATGCTCGATTTTTGTGTTCGGTGGCACGGACAGAT
CGAAGCAGCGGTACTATAATGACCTTGTTGAACTTCGAGGAATTCTATCT
CCCAACGATTTGTACCAGAAATGCGAGACATGTACGTCAACGAGAGCGTT
GCTGAACAATGATATGTTCTCAGATGTGAAATTCGTCGTGGAAGGCAAAA
CAATCCCTGCACACAAGTGTATTCTATACGCCCGGTCAGAGTACTTCAGG
AGCATGTTTGATTCCAGTATGCGAGAAACTTCTGCGTCAGATATTCCAAT
ACCAGATGTGTCTTACGAGGTATTTCACGGAGTTTTGGACTATTTGTACT
CTGGAGAAGTTCGGATACGCGATGGGCAAATAGCGGTTGAGCTTCTTAAG
GCTGCCGATATGTTCAGAATAGAGGGATTGAAAAATAGGTGTGCCGAGAG
GGTTGAACAAGGCGTCACCCCGGAAAACGCTTCTTTTATATGTCAGGTCG
CAGATCGACACAATTCTTCGAACTTGAAGAATTATTGTATAGCATATATC
GTTCAAAACTTCAGGCATGTGATTAAGACGGAATCCTTCGAAGACCTCAT
GACACAGGATGCTGGAGGTCTAGGACGGGAAATACTTACAGCGTTCTCGG
ACAGCACGTCTTATGTAGGTCTGAAGCGAGCCCGATCATAG

protein sequence of Gchil1966.t1

>Gchil1966.t1 ID=Gchil1966.t1|Name=Gchil1966.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=647bp
MHRHSFPTFRSSSNLVADPSRRSLPASSDTIPEWVINESMDDRVPCQRAG
HSLASFEDKIYLFGGCCSYYNSAEAMHDTGEAPEVAGELLHFNTLHEYST
DTSKWRLLHPGGEIRLRSRLVPKERRHASLVVYGHSLYLYGGFDRRDHVL
SDLWEFRLDEKKWVLISGNPDSCNYSVYEPLPVVVRVPTPVARAEHTAVV
YKHRMIVFGGYDGKKKLNDSFVYDFATRRWSSPFPARQGAPSRRCKHSAV
LYKGKMYVVGGFQYKDGDNYALTDMHALDLESFTWDNFDIDESAPQALQG
HKAVVCGETMYILGGKVRPRSVRHSMPAAMPDQTSPVGIIPSNMDISVTH
VNLATLIPQESNGSLQIPPDYMPDETRSSGLNHVVFTYDFTTTAWSVLRT
IGMPPTPRQLHAVVPIQTSDRLCSIFVFGGTDRSKQRYYNDLVELRGILS
PNDLYQKCETCTSTRALLNNDMFSDVKFVVEGKTIPAHKCILYARSEYFR
SMFDSSMRETSASDIPIPDVSYEVFHGVLDYLYSGEVRIRDGQIAVELLK
AADMFRIEGLKNRCAERVEQGVTPENASFICQVADRHNSSNLKNYCIAYI
VQNFRHVIKTESFEDLMTQDAGGLGREILTAFSDSTSYVGLKRARS*

mRNA from alignment at tig00004439_pilon:1303345..1305285+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1966.t1 ID=Gchil1966.t1|Name=Gchil1966.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1941bp|location=Sequence derived from alignment at tig00004439_pilon:1303345..1305285+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATCGTCACAGCTTTCCCACATTTCGATCCTCGTCAAATCTTGTTGC
TGATCCTTCACGCCGATCCCTGCCCGCGTCGTCCGATACCATTCCCGAGT
GGGTTATCAATGAGTCCATGGATGATAGAGTACCGTGCCAGAGAGCAGGG
CACTCGCTCGCATCGTTCGAGGACAAAATATATTTGTTCGGAGGCTGCTG
CAGCTACTACAACAGCGCAGAAGCGATGCACGACACAGGCGAAGCACCAG
AGGTAGCAGGAGAGCTCCTCCATTTCAACACACTTCACGAGTACTCTACG
GATACAAGCAAATGGCGCCTACTCCACCCTGGTGGTGAAATTCGACTTCG
CTCCAGGCTTGTCCCGAAAGAGCGCCGTCATGCGTCACTTGTCGTGTACG
GCCATTCTCTTTATCTGTACGGTGGATTCGACCGTAGAGACCACGTCCTG
TCTGATCTTTGGGAGTTTCGTCTTGATGAAAAGAAGTGGGTATTGATTTC
TGGAAATCCCGACTCGTGTAATTATAGCGTGTATGAACCATTGCCGGTTG
TCGTACGGGTACCCACTCCCGTTGCGCGGGCAGAACATACTGCAGTCGTC
TACAAACATCGGATGATAGTATTTGGTGGCTATGACGGAAAAAAGAAACT
TAACGATTCTTTCGTGTATGACTTTGCTACTCGAAGGTGGTCATCCCCCT
TTCCGGCGCGTCAGGGTGCACCAAGCCGACGCTGTAAACATTCCGCCGTA
CTGTACAAGGGTAAAATGTATGTTGTCGGGGGCTTTCAGTACAAAGATGG
AGATAACTATGCACTCACCGACATGCATGCTCTTGACCTCGAGTCCTTTA
CGTGGGACAACTTCGACATCGACGAGTCGGCACCTCAAGCGTTACAAGGG
CACAAGGCTGTTGTCTGTGGAGAAACCATGTATATTCTGGGAGGGAAAGT
ACGACCGCGTAGCGTGAGACACAGTATGCCGGCTGCTATGCCCGATCAAA
CATCTCCAGTAGGTATCATTCCGTCTAATATGGACATCAGTGTAACACAT
GTGAACCTTGCAACCCTGATACCCCAAGAAAGTAATGGATCCCTTCAAAT
CCCTCCAGACTACATGCCGGACGAGACGCGAAGTTCCGGCCTTAACCATG
TCGTGTTTACGTACGATTTCACAACAACGGCGTGGTCGGTGCTTCGAACG
ATCGGCATGCCTCCGACTCCACGTCAGTTGCACGCTGTAGTCCCCATTCA
AACAAGCGACCGTCTATGCTCGATTTTTGTGTTCGGTGGCACGGACAGAT
CGAAGCAGCGGTACTATAATGACCTTGTTGAACTTCGAGGAATTCTATCT
CCCAACGATTTGTACCAGAAATGCGAGACATGTACGTCAACGAGAGCGTT
GCTGAACAATGATATGTTCTCAGATGTGAAATTCGTCGTGGAAGGCAAAA
CAATCCCTGCACACAAGTGTATTCTATACGCCCGGTCAGAGTACTTCAGG
AGCATGTTTGATTCCAGTATGCGAGAAACTTCTGCGTCAGATATTCCAAT
ACCAGATGTGTCTTACGAGGTATTTCACGGAGTTTTGGACTATTTGTACT
CTGGAGAAGTTCGGATACGCGATGGGCAAATAGCGGTTGAGCTTCTTAAG
GCTGCCGATATGTTCAGAATAGAGGGATTGAAAAATAGGTGTGCCGAGAG
GGTTGAACAAGGCGTCACCCCGGAAAACGCTTCTTTTATATGTCAGGTCG
CAGATCGACACAATTCTTCGAACTTGAAGAATTATTGTATAGCATATATC
GTTCAAAACTTCAGGCATGTGATTAAGACGGAATCCTTCGAAGACCTCAT
GACACAGGATGCTGGAGGTCTAGGACGGGAAATACTTACAGCGTTCTCGG
ACAGCACGTCTTATGTAGGTCTGAAGCGAGCCCGATCATAG

Coding sequence (CDS) from alignment at tig00004439_pilon:1303345..1305285+

>Gchil1966.t1 ID=Gchil1966.t1|Name=Gchil1966.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1941bp|location=Sequence derived from alignment at tig00004439_pilon:1303345..1305285+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATCGTCACAGCTTTCCCACATTTCGATCCTCGTCAAATCTTGTTGC
TGATCCTTCACGCCGATCCCTGCCCGCGTCGTCCGATACCATTCCCGAGT
GGGTTATCAATGAGTCCATGGATGATAGAGTACCGTGCCAGAGAGCAGGG
CACTCGCTCGCATCGTTCGAGGACAAAATATATTTGTTCGGAGGCTGCTG
CAGCTACTACAACAGCGCAGAAGCGATGCACGACACAGGCGAAGCACCAG
AGGTAGCAGGAGAGCTCCTCCATTTCAACACACTTCACGAGTACTCTACG
GATACAAGCAAATGGCGCCTACTCCACCCTGGTGGTGAAATTCGACTTCG
CTCCAGGCTTGTCCCGAAAGAGCGCCGTCATGCGTCACTTGTCGTGTACG
GCCATTCTCTTTATCTGTACGGTGGATTCGACCGTAGAGACCACGTCCTG
TCTGATCTTTGGGAGTTTCGTCTTGATGAAAAGAAGTGGGTATTGATTTC
TGGAAATCCCGACTCGTGTAATTATAGCGTGTATGAACCATTGCCGGTTG
TCGTACGGGTACCCACTCCCGTTGCGCGGGCAGAACATACTGCAGTCGTC
TACAAACATCGGATGATAGTATTTGGTGGCTATGACGGAAAAAAGAAACT
TAACGATTCTTTCGTGTATGACTTTGCTACTCGAAGGTGGTCATCCCCCT
TTCCGGCGCGTCAGGGTGCACCAAGCCGACGCTGTAAACATTCCGCCGTA
CTGTACAAGGGTAAAATGTATGTTGTCGGGGGCTTTCAGTACAAAGATGG
AGATAACTATGCACTCACCGACATGCATGCTCTTGACCTCGAGTCCTTTA
CGTGGGACAACTTCGACATCGACGAGTCGGCACCTCAAGCGTTACAAGGG
CACAAGGCTGTTGTCTGTGGAGAAACCATGTATATTCTGGGAGGGAAAGT
ACGACCGCGTAGCGTGAGACACAGTATGCCGGCTGCTATGCCCGATCAAA
CATCTCCAGTAGGTATCATTCCGTCTAATATGGACATCAGTGTAACACAT
GTGAACCTTGCAACCCTGATACCCCAAGAAAGTAATGGATCCCTTCAAAT
CCCTCCAGACTACATGCCGGACGAGACGCGAAGTTCCGGCCTTAACCATG
TCGTGTTTACGTACGATTTCACAACAACGGCGTGGTCGGTGCTTCGAACG
ATCGGCATGCCTCCGACTCCACGTCAGTTGCACGCTGTAGTCCCCATTCA
AACAAGCGACCGTCTATGCTCGATTTTTGTGTTCGGTGGCACGGACAGAT
CGAAGCAGCGGTACTATAATGACCTTGTTGAACTTCGAGGAATTCTATCT
CCCAACGATTTGTACCAGAAATGCGAGACATGTACGTCAACGAGAGCGTT
GCTGAACAATGATATGTTCTCAGATGTGAAATTCGTCGTGGAAGGCAAAA
CAATCCCTGCACACAAGTGTATTCTATACGCCCGGTCAGAGTACTTCAGG
AGCATGTTTGATTCCAGTATGCGAGAAACTTCTGCGTCAGATATTCCAAT
ACCAGATGTGTCTTACGAGGTATTTCACGGAGTTTTGGACTATTTGTACT
CTGGAGAAGTTCGGATACGCGATGGGCAAATAGCGGTTGAGCTTCTTAAG
GCTGCCGATATGTTCAGAATAGAGGGATTGAAAAATAGGTGTGCCGAGAG
GGTTGAACAAGGCGTCACCCCGGAAAACGCTTCTTTTATATGTCAGGTCG
CAGATCGACACAATTCTTCGAACTTGAAGAATTATTGTATAGCATATATC
GTTCAAAACTTCAGGCATGTGATTAAGACGGAATCCTTCGAAGACCTCAT
GACACAGGATGCTGGAGGTCTAGGACGGGAAATACTTACAGCGTTCTCGG
ACAGCACGTCTTATGTAGGTCTGAAGCGAGCCCGATCATAG