Gchil1228.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1228.t1
Unique NameGchil1228.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length290
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:431346..432330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog215358.XP_010745471.1
Preferred nameSERGEF
PFAMsRCC1,RCC1_2
Max annot lvl33208|Metazoa
KEGG koko:K15421
GOsGO:0002791,GO:0002792,GO:0003674,GO:0005085,GO:0005087,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0007154,GO:0007165,GO:0008150,GO:0008536,GO:0009987,GO:0016234,GO:0016235,GO:0017016,GO:0019899,GO:0023052,GO:0031267,GO:0031974,GO:0031981,GO:0032879,GO:0032880,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0050708,GO:0050709,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051223,GO:0051224,GO:0051716,GO:0065007,GO:0065009,GO:0070013,GO:0070201,GO:0090087,GO:0098772,GO:1903530,GO:1903531,GO:1904950
Evalue1.97e-12
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota,38HWE@33154|Opisthokonta,3BCN9@33208|Metazoa,3CX3Z@33213|Bilateria,4835Q@7711|Chordata,48X0M@7742|Vertebrata,49XPI@7898|Actinopterygii
Descriptionguanine nucleotide exchange
COG categoryDZ
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1228Gchil1228Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 431346..432330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1228.t1Gchil1228.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 431346..432330 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1228.t1.start1Gchil1228.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 431346..431348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1228.t1.CDS1Gchil1228.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 431346..432194 +
Gchil1228.t1.CDS2Gchil1228.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 432310..432330 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1228.t1.exon1Gchil1228.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 431346..432194 +
Gchil1228.t1.exon2Gchil1228.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 432310..432330 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1228.t1.intron1Gchil1228.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 432195..432309 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1228.t1.stop1Gchil1228.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 432328..432330 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1228.t1 ID=Gchil1228.t1|Name=Gchil1228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=290bp
MGSYPKPLPDGLTIFTVLPQHLVERLLFHSEFTASDLSALRSAALIEGLY
SLAHATEVTAAALVRTHPNGKALLGDKQPSETNISLLRYLQRLDGAATPS
GPTEIWSCGRNDLGQGVRPDQEDQNSLTATYRVASEACEFEQQPAKLIII
SAGSHHSAAVSELGTLHVAGANHRGQLGLGDLSPRSAWAPVLDLKWTRVA
QVSCGLAHTVLLSWQGLVFVAGANEFGQLGLGDQVQETRFSKLNLSPASM
IAAGNAHSVVLLEDGTAWGSGDNSRGQLGGRRGGNATVD*
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spliced messenger RNA

>Gchil1228.t1 ID=Gchil1228.t1|Name=Gchil1228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00004437_pilon:431346..432330+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTCCTATCCGAAGCCTTTACCAGACGGTCTAACTATTTTCACTGT
GCTTCCTCAACATCTTGTGGAACGCTTATTATTTCATTCGGAGTTCACTG
CGAGTGATCTTTCGGCCTTGAGAAGTGCAGCTTTGATAGAGGGCTTGTAC
TCTCTTGCACATGCTACGGAGGTAACAGCTGCTGCCTTAGTACGCACGCA
CCCCAACGGCAAAGCGTTGTTAGGGGATAAACAACCTTCAGAGACAAATA
TTTCATTGCTTCGTTATTTGCAACGACTGGATGGCGCTGCTACACCATCC
GGGCCCACTGAAATTTGGAGCTGTGGTCGAAATGATCTAGGACAGGGTGT
TAGGCCGGACCAAGAAGACCAAAACTCTCTTACCGCGACTTACAGAGTGG
CTTCAGAAGCATGTGAGTTTGAACAGCAGCCTGCTAAGTTAATCATCATC
AGCGCAGGTTCACATCACTCCGCAGCAGTATCAGAGCTTGGTACGCTACA
TGTAGCAGGGGCAAATCACAGAGGGCAGCTCGGACTCGGCGATCTGTCAC
CTCGCTCTGCGTGGGCGCCGGTTTTAGATCTTAAATGGACGAGAGTGGCG
CAGGTCTCGTGTGGACTTGCACACACGGTCCTTCTTTCTTGGCAAGGTCT
TGTTTTCGTTGCGGGTGCCAATGAATTTGGACAACTTGGGCTTGGAGACC
AAGTACAGGAAACCCGATTCTCGAAGCTTAACCTTTCACCTGCCAGCATG
ATTGCGGCTGGAAACGCTCATAGTGTCGTGTTGCTTGAGGATGGCACTGC
TTGGGGTTCGGGAGACAATTCAAGAGGGCAACTTGGTGGCAGACGAGGTG
GAAACGCCACGGTGGACTGA
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protein sequence of Gchil1228.t1

>Gchil1228.t1 ID=Gchil1228.t1|Name=Gchil1228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=290bp
MGSYPKPLPDGLTIFTVLPQHLVERLLFHSEFTASDLSALRSAALIEGLY
SLAHATEVTAAALVRTHPNGKALLGDKQPSETNISLLRYLQRLDGAATPS
GPTEIWSCGRNDLGQGVRPDQEDQNSLTATYRVASEACEFEQQPAKLIII
SAGSHHSAAVSELGTLHVAGANHRGQLGLGDLSPRSAWAPVLDLKWTRVA
QVSCGLAHTVLLSWQGLVFVAGANEFGQLGLGDQVQETRFSKLNLSPASM
IAAGNAHSVVLLEDGTAWGSGDNSRGQLGGRRGGNATVD*
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mRNA from alignment at tig00004437_pilon:431346..432330+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1228.t1 ID=Gchil1228.t1|Name=Gchil1228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=985bp|location=Sequence derived from alignment at tig00004437_pilon:431346..432330+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGGTCCTATCCGAAGCCTTTACCAGACGGTCTAACTATTTTCACTGT
GCTTCCTCAACATCTTGTGGAACGCTTATTATTTCATTCGGAGTTCACTG
CGAGTGATCTTTCGGCCTTGAGAAGTGCAGCTTTGATAGAGGGCTTGTAC
TCTCTTGCACATGCTACGGAGGTAACAGCTGCTGCCTTAGTACGCACGCA
CCCCAACGGCAAAGCGTTGTTAGGGGATAAACAACCTTCAGAGACAAATA
TTTCATTGCTTCGTTATTTGCAACGACTGGATGGCGCTGCTACACCATCC
GGGCCCACTGAAATTTGGAGCTGTGGTCGAAATGATCTAGGACAGGGTGT
TAGGCCGGACCAAGAAGACCAAAACTCTCTTACCGCGACTTACAGAGTGG
CTTCAGAAGCATGTGAGTTTGAACAGCAGCCTGCTAAGTTAATCATCATC
AGCGCAGGTTCACATCACTCCGCAGCAGTATCAGAGCTTGGTACGCTACA
TGTAGCAGGGGCAAATCACAGAGGGCAGCTCGGACTCGGCGATCTGTCAC
CTCGCTCTGCGTGGGCGCCGGTTTTAGATCTTAAATGGACGAGAGTGGCG
CAGGTCTCGTGTGGACTTGCACACACGGTCCTTCTTTCTTGGCAAGGTCT
TGTTTTCGTTGCGGGTGCCAATGAATTTGGACAACTTGGGCTTGGAGACC
AAGTACAGGAAACCCGATTCTCGAAGCTTAACCTTTCACCTGCCAGCATG
ATTGCGGCTGGAAACGCTCATAGTGTCGTGTTGCTTGAGGATGGCACTGC
TTGGGGTTCGGGAGACAATTCAAGAGGGCAACTTGGTGGCAGACGAGGTG
TAAGGCGCGATAAATTCGCTCCTATTGTCTGTTTCGGCAGAAAGGTTATG
CGAATTGCATGTGGTTTCGATACTACTATGCTCTTGACGGTTGATAACAT
GGTTTTGGTGACAGGGAAACGCCACGGTGGACTGA
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Coding sequence (CDS) from alignment at tig00004437_pilon:431346..432330+

>Gchil1228.t1 ID=Gchil1228.t1|Name=Gchil1228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=870bp|location=Sequence derived from alignment at tig00004437_pilon:431346..432330+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGGTCCTATCCGAAGCCTTTACCAGACGGTCTAACTATTTTCACTGT
GCTTCCTCAACATCTTGTGGAACGCTTATTATTTCATTCGGAGTTCACTG
CGAGTGATCTTTCGGCCTTGAGAAGTGCAGCTTTGATAGAGGGCTTGTAC
TCTCTTGCACATGCTACGGAGGTAACAGCTGCTGCCTTAGTACGCACGCA
CCCCAACGGCAAAGCGTTGTTAGGGGATAAACAACCTTCAGAGACAAATA
TTTCATTGCTTCGTTATTTGCAACGACTGGATGGCGCTGCTACACCATCC
GGGCCCACTGAAATTTGGAGCTGTGGTCGAAATGATCTAGGACAGGGTGT
TAGGCCGGACCAAGAAGACCAAAACTCTCTTACCGCGACTTACAGAGTGG
CTTCAGAAGCATGTGAGTTTGAACAGCAGCCTGCTAAGTTAATCATCATC
AGCGCAGGTTCACATCACTCCGCAGCAGTATCAGAGCTTGGTACGCTACA
TGTAGCAGGGGCAAATCACAGAGGGCAGCTCGGACTCGGCGATCTGTCAC
CTCGCTCTGCGTGGGCGCCGGTTTTAGATCTTAAATGGACGAGAGTGGCG
CAGGTCTCGTGTGGACTTGCACACACGGTCCTTCTTTCTTGGCAAGGTCT
TGTTTTCGTTGCGGGTGCCAATGAATTTGGACAACTTGGGCTTGGAGACC
AAGTACAGGAAACCCGATTCTCGAAGCTTAACCTTTCACCTGCCAGCATG
ATTGCGGCTGGAAACGCTCATAGTGTCGTGTTGCTTGAGGATGGCACTGC
TTGGGGTTCGGGAGACAATTCAAGAGGGCAACTTGGTGGCAGACGAGGTG
GAAACGCCACGGTGGACTGA
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