Gchil8068.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8068.t1
Unique Name	Gchil8068.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	431

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004435_pilon	contig	tig00004435_pilon:1037247..1038539 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8068	Gchil8068	Gracilaria chilensis NLEC103_M9 male	gene	tig00004435_pilon 1037247..1038539 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8068.t1.start1	Gchil8068.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004435_pilon 1037247..1037249 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8068.t1.CDS1	Gchil8068.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004435_pilon 1037247..1038539 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8068.t1.exon1	Gchil8068.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004435_pilon 1037247..1038539 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8068.t1.stop1	Gchil8068.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004435_pilon 1038537..1038539 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8068.t1	Gchil8068.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004435_pilon 1037247..1038539 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004435_pilon:1037247..1038539+
coding sequence from alignment at tig00004435_pilon:1037247..1038539+

mRNA sequence

>Gchil8068.t1 ID=Gchil8068.t1|Name=Gchil8068.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=431bp
MIYWSLKRSQGFQNHILPFESVTLSDIALRFPGRPAFVRDLKRFLGIVVE
EYGEWHREQRFLSETNASHVQTLPLLIFRGDSNRGLGDRFRGLLRAYLLA
VVTERFFLIDLPEMGSMSKMLGNPLKNNFIYDPAVFSNEKSEETIRGGKE
LHCNLRKYLNSSRVIIATGQRGPQLRCFLSITTRYPQLPFALKIKKADLE
SFEVGESVVAPFLLQLLFETAPSLRRSLKEKDPFRGEAYLASHARFGHGV
SEGEHKRFNVEKEGLDLRSLSICFGRVVGMAAKHSAMNRIFLATDTANAT
KWIKEGVRVELPNAIVGTLKGQVAHVNSLRTEGGEDRMYEVFERAFVDLG
LMARGKGLVALNSGFSRLAAWMGAHDDRNTIMFDTKFCGVLRYGAGMGGE
NGECCKTVRMRTLVEKKTIGRWKYACNLTK*

spliced messenger RNA

>Gchil8068.t1 ID=Gchil8068.t1|Name=Gchil8068.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00004435_pilon:1037247..1038539+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCTATTGGAGTCTGAAACGATCTCAAGGTTTTCAAAACCACATTCT
TCCCTTCGAATCCGTCACCCTCAGCGACATTGCCCTTCGTTTTCCTGGCC
GTCCTGCCTTTGTTCGAGATTTGAAGAGGTTTTTGGGGATTGTGGTCGAA
GAGTATGGAGAGTGGCACAGAGAACAGCGGTTTCTGAGTGAGACAAACGC
GTCTCATGTGCAGACACTACCATTGCTGATCTTCCGCGGGGACTCAAATC
GTGGCCTTGGTGATCGCTTCCGTGGTCTGCTTCGCGCCTATCTTCTGGCA
GTTGTAACAGAGCGCTTCTTTTTAATCGACCTGCCGGAAATGGGTTCAAT
GTCGAAAATGTTAGGGAATCCTTTAAAGAACAATTTCATTTATGATCCCG
CGGTCTTCTCAAATGAAAAAAGTGAAGAAACTATTCGTGGTGGTAAGGAA
TTACACTGCAACCTTCGCAAGTACCTGAACTCTTCTCGCGTCATCATTGC
GACAGGCCAACGAGGTCCGCAATTGAGATGCTTTCTTTCCATCACAACCC
GATATCCACAACTGCCTTTCGCACTGAAAATAAAGAAGGCGGACCTGGAA
TCATTCGAAGTTGGGGAAAGCGTAGTGGCTCCTTTCTTACTGCAGTTGCT
TTTCGAGACCGCTCCATCATTGCGAAGAAGCCTAAAAGAAAAAGATCCTT
TCCGAGGCGAGGCATACCTAGCCTCGCACGCCAGGTTTGGACACGGTGTC
AGCGAAGGGGAACATAAACGCTTTAATGTGGAGAAGGAGGGATTAGATTT
GCGCAGTTTGTCGATTTGTTTTGGTCGTGTTGTGGGCATGGCCGCTAAGC
ATTCCGCGATGAATAGAATTTTTCTTGCAACAGATACGGCAAACGCCACA
AAGTGGATCAAAGAGGGAGTGCGTGTAGAACTGCCAAATGCAATCGTGGG
AACCCTTAAAGGTCAAGTAGCTCATGTGAACAGTCTGCGAACCGAGGGCG
GAGAAGACAGGATGTATGAAGTGTTTGAAAGAGCTTTTGTGGATCTGGGG
CTCATGGCAAGAGGAAAAGGGTTGGTTGCCCTGAACTCAGGGTTTTCTCG
GCTGGCAGCGTGGATGGGTGCACATGATGATCGAAACACAATCATGTTTG
ACACCAAGTTTTGCGGAGTGCTCCGGTATGGTGCAGGGATGGGTGGCGAA
AACGGCGAATGCTGTAAAACAGTGCGCATGCGAACCCTCGTCGAAAAAAA
AACCATAGGTCGATGGAAATATGCGTGCAACTTGACCAAATGA

protein sequence of Gchil8068.t1

>Gchil8068.t1 ID=Gchil8068.t1|Name=Gchil8068.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=431bp
MIYWSLKRSQGFQNHILPFESVTLSDIALRFPGRPAFVRDLKRFLGIVVE
EYGEWHREQRFLSETNASHVQTLPLLIFRGDSNRGLGDRFRGLLRAYLLA
VVTERFFLIDLPEMGSMSKMLGNPLKNNFIYDPAVFSNEKSEETIRGGKE
LHCNLRKYLNSSRVIIATGQRGPQLRCFLSITTRYPQLPFALKIKKADLE
SFEVGESVVAPFLLQLLFETAPSLRRSLKEKDPFRGEAYLASHARFGHGV
SEGEHKRFNVEKEGLDLRSLSICFGRVVGMAAKHSAMNRIFLATDTANAT
KWIKEGVRVELPNAIVGTLKGQVAHVNSLRTEGGEDRMYEVFERAFVDLG
LMARGKGLVALNSGFSRLAAWMGAHDDRNTIMFDTKFCGVLRYGAGMGGE
NGECCKTVRMRTLVEKKTIGRWKYACNLTK*

mRNA from alignment at tig00004435_pilon:1037247..1038539+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8068.t1 ID=Gchil8068.t1|Name=Gchil8068.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00004435_pilon:1037247..1038539+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCTATTGGAGTCTGAAACGATCTCAAGGTTTTCAAAACCACATTCT
TCCCTTCGAATCCGTCACCCTCAGCGACATTGCCCTTCGTTTTCCTGGCC
GTCCTGCCTTTGTTCGAGATTTGAAGAGGTTTTTGGGGATTGTGGTCGAA
GAGTATGGAGAGTGGCACAGAGAACAGCGGTTTCTGAGTGAGACAAACGC
GTCTCATGTGCAGACACTACCATTGCTGATCTTCCGCGGGGACTCAAATC
GTGGCCTTGGTGATCGCTTCCGTGGTCTGCTTCGCGCCTATCTTCTGGCA
GTTGTAACAGAGCGCTTCTTTTTAATCGACCTGCCGGAAATGGGTTCAAT
GTCGAAAATGTTAGGGAATCCTTTAAAGAACAATTTCATTTATGATCCCG
CGGTCTTCTCAAATGAAAAAAGTGAAGAAACTATTCGTGGTGGTAAGGAA
TTACACTGCAACCTTCGCAAGTACCTGAACTCTTCTCGCGTCATCATTGC
GACAGGCCAACGAGGTCCGCAATTGAGATGCTTTCTTTCCATCACAACCC
GATATCCACAACTGCCTTTCGCACTGAAAATAAAGAAGGCGGACCTGGAA
TCATTCGAAGTTGGGGAAAGCGTAGTGGCTCCTTTCTTACTGCAGTTGCT
TTTCGAGACCGCTCCATCATTGCGAAGAAGCCTAAAAGAAAAAGATCCTT
TCCGAGGCGAGGCATACCTAGCCTCGCACGCCAGGTTTGGACACGGTGTC
AGCGAAGGGGAACATAAACGCTTTAATGTGGAGAAGGAGGGATTAGATTT
GCGCAGTTTGTCGATTTGTTTTGGTCGTGTTGTGGGCATGGCCGCTAAGC
ATTCCGCGATGAATAGAATTTTTCTTGCAACAGATACGGCAAACGCCACA
AAGTGGATCAAAGAGGGAGTGCGTGTAGAACTGCCAAATGCAATCGTGGG
AACCCTTAAAGGTCAAGTAGCTCATGTGAACAGTCTGCGAACCGAGGGCG
GAGAAGACAGGATGTATGAAGTGTTTGAAAGAGCTTTTGTGGATCTGGGG
CTCATGGCAAGAGGAAAAGGGTTGGTTGCCCTGAACTCAGGGTTTTCTCG
GCTGGCAGCGTGGATGGGTGCACATGATGATCGAAACACAATCATGTTTG
ACACCAAGTTTTGCGGAGTGCTCCGGTATGGTGCAGGGATGGGTGGCGAA
AACGGCGAATGCTGTAAAACAGTGCGCATGCGAACCCTCGTCGAAAAAAA
AACCATAGGTCGATGGAAATATGCGTGCAACTTGACCAAATGA

Coding sequence (CDS) from alignment at tig00004435_pilon:1037247..1038539+

>Gchil8068.t1 ID=Gchil8068.t1|Name=Gchil8068.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1293bp|location=Sequence derived from alignment at tig00004435_pilon:1037247..1038539+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCTATTGGAGTCTGAAACGATCTCAAGGTTTTCAAAACCACATTCT
TCCCTTCGAATCCGTCACCCTCAGCGACATTGCCCTTCGTTTTCCTGGCC
GTCCTGCCTTTGTTCGAGATTTGAAGAGGTTTTTGGGGATTGTGGTCGAA
GAGTATGGAGAGTGGCACAGAGAACAGCGGTTTCTGAGTGAGACAAACGC
GTCTCATGTGCAGACACTACCATTGCTGATCTTCCGCGGGGACTCAAATC
GTGGCCTTGGTGATCGCTTCCGTGGTCTGCTTCGCGCCTATCTTCTGGCA
GTTGTAACAGAGCGCTTCTTTTTAATCGACCTGCCGGAAATGGGTTCAAT
GTCGAAAATGTTAGGGAATCCTTTAAAGAACAATTTCATTTATGATCCCG
CGGTCTTCTCAAATGAAAAAAGTGAAGAAACTATTCGTGGTGGTAAGGAA
TTACACTGCAACCTTCGCAAGTACCTGAACTCTTCTCGCGTCATCATTGC
GACAGGCCAACGAGGTCCGCAATTGAGATGCTTTCTTTCCATCACAACCC
GATATCCACAACTGCCTTTCGCACTGAAAATAAAGAAGGCGGACCTGGAA
TCATTCGAAGTTGGGGAAAGCGTAGTGGCTCCTTTCTTACTGCAGTTGCT
TTTCGAGACCGCTCCATCATTGCGAAGAAGCCTAAAAGAAAAAGATCCTT
TCCGAGGCGAGGCATACCTAGCCTCGCACGCCAGGTTTGGACACGGTGTC
AGCGAAGGGGAACATAAACGCTTTAATGTGGAGAAGGAGGGATTAGATTT
GCGCAGTTTGTCGATTTGTTTTGGTCGTGTTGTGGGCATGGCCGCTAAGC
ATTCCGCGATGAATAGAATTTTTCTTGCAACAGATACGGCAAACGCCACA
AAGTGGATCAAAGAGGGAGTGCGTGTAGAACTGCCAAATGCAATCGTGGG
AACCCTTAAAGGTCAAGTAGCTCATGTGAACAGTCTGCGAACCGAGGGCG
GAGAAGACAGGATGTATGAAGTGTTTGAAAGAGCTTTTGTGGATCTGGGG
CTCATGGCAAGAGGAAAAGGGTTGGTTGCCCTGAACTCAGGGTTTTCTCG
GCTGGCAGCGTGGATGGGTGCACATGATGATCGAAACACAATCATGTTTG
ACACCAAGTTTTGCGGAGTGCTCCGGTATGGTGCAGGGATGGGTGGCGAA
AACGGCGAATGCTGTAAAACAGTGCGCATGCGAACCCTCGTCGAAAAAAA
AACCATAGGTCGATGGAAATATGCGTGCAACTTGACCAAATGA