Gchil1337.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1337.t1
Unique NameGchil1337.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length520
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:488908..490467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1337Gchil1337Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 488908..490467 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1337.t1.start1Gchil1337.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 488908..488910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1337.t1.CDS1Gchil1337.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 488908..490467 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1337.t1.exon1Gchil1337.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 488908..490467 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1337.t1.stop1Gchil1337.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 490465..490467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1337.t1Gchil1337.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 488908..490467 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1337.t1 ID=Gchil1337.t1|Name=Gchil1337.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=520bp
MNRQVFLFLAIAVCVSFFSISESINTKIFEKGIQNGQKRPNKKGVTPLSN
KMKDFYKKASVPKKSGTSHRQGLNYDVCETDYDCQGTRVCSGYDAQGDVG
NCGISFPDECRCLEEDPFCSSSSDCSVGENCASELVPDYEICVSNQVFQD
DQYSGTEPSTETAELSSKPGSNGVALDYCTTDYDCQEGLKCYTFDSEGFY
VNCDLATGNECFCDYDFENGSYGECTSESDCLSGEGCDEFDGSGFCISDT
AFQGYNLDFCFSSLDCRGARECLSASAIMSGSLAPCSTSDTQCVCLQENI
LCTDSYDCAYWGESCYSNGGTSLCVSDAALSQLRAKKMSSAITRLTSVVG
PSPASTFEAEAGESAPQNSSATDSSSSDSEISATQAQPGNFENDDAIADS
PNPSTASEKVCIAVHSLAHLKAHELLYETHRTARVLCDNHNSCATAGHIV
QYQGTPMMMKNYCALVGCKMEIMNVNSPRYKRGMQLPSMTKDLSFTTFAA
RYETSTEEKLLATAVRFGL*
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spliced messenger RNA

>Gchil1337.t1 ID=Gchil1337.t1|Name=Gchil1337.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1560bp|location=Sequence derived from alignment at tig00004433_pilon:488908..490467+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATAGGCAGGTGTTTCTTTTCCTTGCCATAGCTGTTTGTGTTTCATT
CTTCTCGATTTCCGAGTCTATCAACACGAAGATTTTCGAAAAAGGAATCC
AGAATGGACAAAAGAGGCCAAACAAGAAAGGAGTTACTCCGCTCAGTAAC
AAGATGAAAGATTTCTATAAGAAGGCGAGCGTACCAAAGAAGTCTGGAAC
TTCTCATCGTCAAGGTTTGAACTATGATGTTTGTGAAACTGATTATGACT
GTCAAGGAACAAGAGTTTGTTCCGGGTATGACGCCCAAGGCGACGTTGGA
AACTGTGGAATCTCTTTCCCCGATGAATGCAGATGTCTTGAAGAGGACCC
CTTCTGTTCCAGTTCTAGCGACTGCAGTGTAGGAGAGAATTGTGCATCTG
AACTTGTTCCAGACTACGAAATATGTGTAAGCAACCAAGTTTTCCAGGAC
GACCAATACTCAGGAACAGAGCCATCCACAGAAACTGCAGAACTTAGTTC
CAAACCCGGATCAAATGGGGTCGCCCTTGACTATTGCACAACTGACTACG
ACTGCCAAGAAGGATTGAAGTGCTACACGTTCGACTCAGAAGGATTTTAC
GTCAATTGCGACCTTGCCACTGGTAACGAATGTTTTTGTGATTACGACTT
CGAGAATGGCTCATACGGAGAATGCACAAGTGAATCCGATTGCTTATCCG
GCGAAGGGTGTGATGAATTCGACGGCTCTGGTTTCTGTATTTCGGATACA
GCATTTCAAGGATACAACTTGGATTTTTGTTTCTCCTCCTTAGACTGTCG
TGGAGCTCGAGAGTGTCTCAGTGCCTCAGCCATTATGTCTGGATCACTCG
CTCCATGCTCTACTAGCGACACACAATGTGTTTGCTTACAAGAAAATATA
CTTTGCACTGATAGCTACGATTGTGCATATTGGGGAGAATCGTGCTATTC
TAATGGTGGCACCTCTCTTTGCGTTTCTGATGCCGCCCTTTCGCAACTCA
GAGCCAAAAAAATGTCTAGTGCGATCACAAGGTTAACTTCAGTTGTAGGA
CCATCTCCGGCATCTACTTTTGAAGCGGAGGCTGGTGAATCTGCTCCTCA
GAATTCAAGTGCAACGGATTCGAGCTCTTCCGATTCGGAAATCAGCGCAA
CACAGGCACAACCAGGGAACTTTGAGAATGATGATGCCATTGCTGATTCG
CCAAACCCGTCGACAGCTTCGGAAAAGGTGTGCATTGCTGTCCACTCGCT
GGCTCATCTCAAAGCACATGAACTCTTGTACGAAACCCATCGAACTGCCC
GTGTGTTGTGTGACAATCACAATAGTTGCGCGACCGCGGGACATATCGTC
CAGTACCAGGGCACACCGATGATGATGAAGAACTACTGTGCTCTTGTCGG
ATGCAAAATGGAAATCATGAATGTCAACAGCCCCCGCTACAAGCGCGGAA
TGCAGCTGCCGTCGATGACAAAAGACTTATCGTTCACTACGTTCGCTGCA
AGGTATGAAACAAGCACAGAAGAAAAGTTGCTTGCAACTGCAGTTCGCTT
TGGTCTTTAG
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protein sequence of Gchil1337.t1

>Gchil1337.t1 ID=Gchil1337.t1|Name=Gchil1337.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=520bp
MNRQVFLFLAIAVCVSFFSISESINTKIFEKGIQNGQKRPNKKGVTPLSN
KMKDFYKKASVPKKSGTSHRQGLNYDVCETDYDCQGTRVCSGYDAQGDVG
NCGISFPDECRCLEEDPFCSSSSDCSVGENCASELVPDYEICVSNQVFQD
DQYSGTEPSTETAELSSKPGSNGVALDYCTTDYDCQEGLKCYTFDSEGFY
VNCDLATGNECFCDYDFENGSYGECTSESDCLSGEGCDEFDGSGFCISDT
AFQGYNLDFCFSSLDCRGARECLSASAIMSGSLAPCSTSDTQCVCLQENI
LCTDSYDCAYWGESCYSNGGTSLCVSDAALSQLRAKKMSSAITRLTSVVG
PSPASTFEAEAGESAPQNSSATDSSSSDSEISATQAQPGNFENDDAIADS
PNPSTASEKVCIAVHSLAHLKAHELLYETHRTARVLCDNHNSCATAGHIV
QYQGTPMMMKNYCALVGCKMEIMNVNSPRYKRGMQLPSMTKDLSFTTFAA
RYETSTEEKLLATAVRFGL*
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mRNA from alignment at tig00004433_pilon:488908..490467+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1337.t1 ID=Gchil1337.t1|Name=Gchil1337.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1560bp|location=Sequence derived from alignment at tig00004433_pilon:488908..490467+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATAGGCAGGTGTTTCTTTTCCTTGCCATAGCTGTTTGTGTTTCATT
CTTCTCGATTTCCGAGTCTATCAACACGAAGATTTTCGAAAAAGGAATCC
AGAATGGACAAAAGAGGCCAAACAAGAAAGGAGTTACTCCGCTCAGTAAC
AAGATGAAAGATTTCTATAAGAAGGCGAGCGTACCAAAGAAGTCTGGAAC
TTCTCATCGTCAAGGTTTGAACTATGATGTTTGTGAAACTGATTATGACT
GTCAAGGAACAAGAGTTTGTTCCGGGTATGACGCCCAAGGCGACGTTGGA
AACTGTGGAATCTCTTTCCCCGATGAATGCAGATGTCTTGAAGAGGACCC
CTTCTGTTCCAGTTCTAGCGACTGCAGTGTAGGAGAGAATTGTGCATCTG
AACTTGTTCCAGACTACGAAATATGTGTAAGCAACCAAGTTTTCCAGGAC
GACCAATACTCAGGAACAGAGCCATCCACAGAAACTGCAGAACTTAGTTC
CAAACCCGGATCAAATGGGGTCGCCCTTGACTATTGCACAACTGACTACG
ACTGCCAAGAAGGATTGAAGTGCTACACGTTCGACTCAGAAGGATTTTAC
GTCAATTGCGACCTTGCCACTGGTAACGAATGTTTTTGTGATTACGACTT
CGAGAATGGCTCATACGGAGAATGCACAAGTGAATCCGATTGCTTATCCG
GCGAAGGGTGTGATGAATTCGACGGCTCTGGTTTCTGTATTTCGGATACA
GCATTTCAAGGATACAACTTGGATTTTTGTTTCTCCTCCTTAGACTGTCG
TGGAGCTCGAGAGTGTCTCAGTGCCTCAGCCATTATGTCTGGATCACTCG
CTCCATGCTCTACTAGCGACACACAATGTGTTTGCTTACAAGAAAATATA
CTTTGCACTGATAGCTACGATTGTGCATATTGGGGAGAATCGTGCTATTC
TAATGGTGGCACCTCTCTTTGCGTTTCTGATGCCGCCCTTTCGCAACTCA
GAGCCAAAAAAATGTCTAGTGCGATCACAAGGTTAACTTCAGTTGTAGGA
CCATCTCCGGCATCTACTTTTGAAGCGGAGGCTGGTGAATCTGCTCCTCA
GAATTCAAGTGCAACGGATTCGAGCTCTTCCGATTCGGAAATCAGCGCAA
CACAGGCACAACCAGGGAACTTTGAGAATGATGATGCCATTGCTGATTCG
CCAAACCCGTCGACAGCTTCGGAAAAGGTGTGCATTGCTGTCCACTCGCT
GGCTCATCTCAAAGCACATGAACTCTTGTACGAAACCCATCGAACTGCCC
GTGTGTTGTGTGACAATCACAATAGTTGCGCGACCGCGGGACATATCGTC
CAGTACCAGGGCACACCGATGATGATGAAGAACTACTGTGCTCTTGTCGG
ATGCAAAATGGAAATCATGAATGTCAACAGCCCCCGCTACAAGCGCGGAA
TGCAGCTGCCGTCGATGACAAAAGACTTATCGTTCACTACGTTCGCTGCA
AGGTATGAAACAAGCACAGAAGAAAAGTTGCTTGCAACTGCAGTTCGCTT
TGGTCTTTAG
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Coding sequence (CDS) from alignment at tig00004433_pilon:488908..490467+

>Gchil1337.t1 ID=Gchil1337.t1|Name=Gchil1337.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1560bp|location=Sequence derived from alignment at tig00004433_pilon:488908..490467+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATAGGCAGGTGTTTCTTTTCCTTGCCATAGCTGTTTGTGTTTCATT
CTTCTCGATTTCCGAGTCTATCAACACGAAGATTTTCGAAAAAGGAATCC
AGAATGGACAAAAGAGGCCAAACAAGAAAGGAGTTACTCCGCTCAGTAAC
AAGATGAAAGATTTCTATAAGAAGGCGAGCGTACCAAAGAAGTCTGGAAC
TTCTCATCGTCAAGGTTTGAACTATGATGTTTGTGAAACTGATTATGACT
GTCAAGGAACAAGAGTTTGTTCCGGGTATGACGCCCAAGGCGACGTTGGA
AACTGTGGAATCTCTTTCCCCGATGAATGCAGATGTCTTGAAGAGGACCC
CTTCTGTTCCAGTTCTAGCGACTGCAGTGTAGGAGAGAATTGTGCATCTG
AACTTGTTCCAGACTACGAAATATGTGTAAGCAACCAAGTTTTCCAGGAC
GACCAATACTCAGGAACAGAGCCATCCACAGAAACTGCAGAACTTAGTTC
CAAACCCGGATCAAATGGGGTCGCCCTTGACTATTGCACAACTGACTACG
ACTGCCAAGAAGGATTGAAGTGCTACACGTTCGACTCAGAAGGATTTTAC
GTCAATTGCGACCTTGCCACTGGTAACGAATGTTTTTGTGATTACGACTT
CGAGAATGGCTCATACGGAGAATGCACAAGTGAATCCGATTGCTTATCCG
GCGAAGGGTGTGATGAATTCGACGGCTCTGGTTTCTGTATTTCGGATACA
GCATTTCAAGGATACAACTTGGATTTTTGTTTCTCCTCCTTAGACTGTCG
TGGAGCTCGAGAGTGTCTCAGTGCCTCAGCCATTATGTCTGGATCACTCG
CTCCATGCTCTACTAGCGACACACAATGTGTTTGCTTACAAGAAAATATA
CTTTGCACTGATAGCTACGATTGTGCATATTGGGGAGAATCGTGCTATTC
TAATGGTGGCACCTCTCTTTGCGTTTCTGATGCCGCCCTTTCGCAACTCA
GAGCCAAAAAAATGTCTAGTGCGATCACAAGGTTAACTTCAGTTGTAGGA
CCATCTCCGGCATCTACTTTTGAAGCGGAGGCTGGTGAATCTGCTCCTCA
GAATTCAAGTGCAACGGATTCGAGCTCTTCCGATTCGGAAATCAGCGCAA
CACAGGCACAACCAGGGAACTTTGAGAATGATGATGCCATTGCTGATTCG
CCAAACCCGTCGACAGCTTCGGAAAAGGTGTGCATTGCTGTCCACTCGCT
GGCTCATCTCAAAGCACATGAACTCTTGTACGAAACCCATCGAACTGCCC
GTGTGTTGTGTGACAATCACAATAGTTGCGCGACCGCGGGACATATCGTC
CAGTACCAGGGCACACCGATGATGATGAAGAACTACTGTGCTCTTGTCGG
ATGCAAAATGGAAATCATGAATGTCAACAGCCCCCGCTACAAGCGCGGAA
TGCAGCTGCCGTCGATGACAAAAGACTTATCGTTCACTACGTTCGCTGCA
AGGTATGAAACAAGCACAGAAGAAAAGTTGCTTGCAACTGCAGTTCGCTT
TGGTCTTTAG
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