Gchil1316.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1316.t1
Unique NameGchil1316.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length553
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:265211..266869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1316Gchil1316Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 265211..266869 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1316.t1.stop1Gchil1316.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 265211..265213 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1316.t1.CDS1Gchil1316.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 265211..266869 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1316.t1.exon1Gchil1316.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 265211..266869 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1316.t1.start1Gchil1316.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 266867..266869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1316.t1Gchil1316.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 265211..266869 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1316.t1 ID=Gchil1316.t1|Name=Gchil1316.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=553bp
MFQLTLTLATFALCILQSRAIFKYDFITPTRPHEAASTVIEETIDPSNMH
TSDSIGQYGFFPNRHSPSASISPFPSILPSPVVISPYSYGPTKTPTPLPS
IQTVGRSDFLSSAVSAQSPRVSSAPTFAAGAASFSDATVSPTRFSTLSGP
APSPSTPFMKRVIAIPLRIANRRAIQSRKPSPPTPSFSPLFDVQPPALLP
LVLRTPFPYITPIPSEFVSVAQRAMKEDQSDCEDSKNEVSDGSQSPSQTI
GLEKMVDRRYAMGYLHSILRSDQTVTPMPQRPKDPIQAEQIIPDSMLQKM
FNASPFDSPVLTALPSSESLIDGASLHAVETNRLENAMEYNTPSSTYPIL
IPEIGKTHVHSVFPSPAPSQFEKDKVRMIHHHRLPMIILKKETITTEESS
LRTKDSNYLPFLHTTAPDPSISVNAHYAYPTPLVIKEFSVPAPTYPVDLY
HGLGQLSMEMVTSPIPIEEVILQSDEVEYYCESVKQCMCATISSKSLSPP
LLSYCDRLDELTSSVCEQSREAHIFFEFWRTKQGVEGMALVNECAPEMAD
LL*
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spliced messenger RNA

>Gchil1316.t1 ID=Gchil1316.t1|Name=Gchil1316.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1659bp|location=Sequence derived from alignment at tig00004433_pilon:265211..266869- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCAACTAACTCTAACTCTGGCAACGTTCGCGCTTTGCATCCTCCA
ATCTCGGGCCATCTTCAAGTATGACTTCATCACTCCTACCCGACCCCATG
AAGCTGCCTCTACAGTCATCGAGGAAACCATTGATCCTAGTAATATGCAC
ACCTCCGATTCAATTGGTCAATATGGGTTCTTCCCCAATCGCCACTCCCC
ATCGGCCTCAATATCTCCCTTTCCAAGCATACTTCCAAGTCCAGTGGTGA
TCTCCCCCTACTCTTATGGTCCTACCAAAACGCCGACACCCCTTCCGTCC
ATTCAGACTGTAGGCAGAAGTGACTTTTTATCTTCAGCCGTTTCTGCTCA
GTCTCCTAGAGTTTCCTCTGCTCCAACTTTCGCGGCGGGTGCGGCTTCCT
TCTCTGATGCTACAGTCTCTCCAACACGTTTCTCAACTCTCTCGGGGCCG
GCTCCAAGCCCATCAACTCCGTTCATGAAGCGCGTCATCGCCATTCCACT
TCGCATAGCGAATCGTCGAGCCATACAAAGCCGAAAACCATCCCCACCAA
CCCCGTCTTTTTCTCCACTTTTCGACGTTCAGCCACCTGCTCTATTGCCT
CTAGTACTCCGAACACCATTTCCGTACATAACACCTATACCATCAGAATT
CGTTTCCGTTGCCCAACGGGCCATGAAAGAGGACCAATCTGACTGTGAAG
ACTCCAAAAATGAGGTCAGTGATGGCTCACAAAGCCCGTCACAAACGATT
GGTCTGGAAAAGATGGTTGACCGCAGATATGCCATGGGATACTTGCATTC
CATATTGAGATCTGATCAGACTGTCACGCCCATGCCCCAACGTCCGAAAG
ACCCCATCCAAGCGGAACAGATTATCCCAGACAGCATGCTTCAGAAGATG
TTTAATGCGTCTCCTTTTGATTCGCCAGTATTGACCGCACTGCCATCGTC
AGAATCCTTGATCGATGGTGCCTCACTGCACGCTGTCGAAACGAACCGCT
TGGAAAATGCAATGGAGTACAACACCCCATCCTCCACATATCCCATCCTC
ATTCCTGAGATCGGGAAGACCCATGTCCACTCAGTCTTTCCCTCTCCAGC
CCCATCTCAATTTGAAAAGGACAAAGTTAGAATGATTCACCACCATCGAC
TTCCCATGATCATATTGAAGAAAGAAACGATCACAACAGAAGAGTCCTCT
TTGCGCACCAAAGATAGCAATTATTTGCCGTTCTTGCACACTACAGCTCC
TGACCCATCGATCTCGGTGAACGCCCATTACGCATATCCCACCCCTCTGG
TGATTAAGGAATTTTCTGTGCCCGCGCCTACATATCCTGTTGATTTGTAT
CATGGCCTTGGACAACTCTCAATGGAAATGGTGACAAGCCCCATTCCTAT
CGAAGAGGTCATCTTGCAGTCCGATGAGGTGGAATACTACTGTGAATCGG
TGAAGCAGTGCATGTGTGCTACTATCAGTTCCAAAAGCCTCAGCCCTCCA
CTTCTATCATATTGCGATCGTCTCGATGAGCTTACCTCGTCGGTTTGTGA
GCAATCAAGAGAGGCACACATCTTTTTTGAATTCTGGAGAACAAAGCAGG
GCGTTGAAGGAATGGCGCTTGTTAATGAATGTGCGCCGGAGATGGCAGAC
CTATTGTAG
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protein sequence of Gchil1316.t1

>Gchil1316.t1 ID=Gchil1316.t1|Name=Gchil1316.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=553bp
MFQLTLTLATFALCILQSRAIFKYDFITPTRPHEAASTVIEETIDPSNMH
TSDSIGQYGFFPNRHSPSASISPFPSILPSPVVISPYSYGPTKTPTPLPS
IQTVGRSDFLSSAVSAQSPRVSSAPTFAAGAASFSDATVSPTRFSTLSGP
APSPSTPFMKRVIAIPLRIANRRAIQSRKPSPPTPSFSPLFDVQPPALLP
LVLRTPFPYITPIPSEFVSVAQRAMKEDQSDCEDSKNEVSDGSQSPSQTI
GLEKMVDRRYAMGYLHSILRSDQTVTPMPQRPKDPIQAEQIIPDSMLQKM
FNASPFDSPVLTALPSSESLIDGASLHAVETNRLENAMEYNTPSSTYPIL
IPEIGKTHVHSVFPSPAPSQFEKDKVRMIHHHRLPMIILKKETITTEESS
LRTKDSNYLPFLHTTAPDPSISVNAHYAYPTPLVIKEFSVPAPTYPVDLY
HGLGQLSMEMVTSPIPIEEVILQSDEVEYYCESVKQCMCATISSKSLSPP
LLSYCDRLDELTSSVCEQSREAHIFFEFWRTKQGVEGMALVNECAPEMAD
LL*
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mRNA from alignment at tig00004433_pilon:265211..266869-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1316.t1 ID=Gchil1316.t1|Name=Gchil1316.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1659bp|location=Sequence derived from alignment at tig00004433_pilon:265211..266869- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCCAACTAACTCTAACTCTGGCAACGTTCGCGCTTTGCATCCTCCA
ATCTCGGGCCATCTTCAAGTATGACTTCATCACTCCTACCCGACCCCATG
AAGCTGCCTCTACAGTCATCGAGGAAACCATTGATCCTAGTAATATGCAC
ACCTCCGATTCAATTGGTCAATATGGGTTCTTCCCCAATCGCCACTCCCC
ATCGGCCTCAATATCTCCCTTTCCAAGCATACTTCCAAGTCCAGTGGTGA
TCTCCCCCTACTCTTATGGTCCTACCAAAACGCCGACACCCCTTCCGTCC
ATTCAGACTGTAGGCAGAAGTGACTTTTTATCTTCAGCCGTTTCTGCTCA
GTCTCCTAGAGTTTCCTCTGCTCCAACTTTCGCGGCGGGTGCGGCTTCCT
TCTCTGATGCTACAGTCTCTCCAACACGTTTCTCAACTCTCTCGGGGCCG
GCTCCAAGCCCATCAACTCCGTTCATGAAGCGCGTCATCGCCATTCCACT
TCGCATAGCGAATCGTCGAGCCATACAAAGCCGAAAACCATCCCCACCAA
CCCCGTCTTTTTCTCCACTTTTCGACGTTCAGCCACCTGCTCTATTGCCT
CTAGTACTCCGAACACCATTTCCGTACATAACACCTATACCATCAGAATT
CGTTTCCGTTGCCCAACGGGCCATGAAAGAGGACCAATCTGACTGTGAAG
ACTCCAAAAATGAGGTCAGTGATGGCTCACAAAGCCCGTCACAAACGATT
GGTCTGGAAAAGATGGTTGACCGCAGATATGCCATGGGATACTTGCATTC
CATATTGAGATCTGATCAGACTGTCACGCCCATGCCCCAACGTCCGAAAG
ACCCCATCCAAGCGGAACAGATTATCCCAGACAGCATGCTTCAGAAGATG
TTTAATGCGTCTCCTTTTGATTCGCCAGTATTGACCGCACTGCCATCGTC
AGAATCCTTGATCGATGGTGCCTCACTGCACGCTGTCGAAACGAACCGCT
TGGAAAATGCAATGGAGTACAACACCCCATCCTCCACATATCCCATCCTC
ATTCCTGAGATCGGGAAGACCCATGTCCACTCAGTCTTTCCCTCTCCAGC
CCCATCTCAATTTGAAAAGGACAAAGTTAGAATGATTCACCACCATCGAC
TTCCCATGATCATATTGAAGAAAGAAACGATCACAACAGAAGAGTCCTCT
TTGCGCACCAAAGATAGCAATTATTTGCCGTTCTTGCACACTACAGCTCC
TGACCCATCGATCTCGGTGAACGCCCATTACGCATATCCCACCCCTCTGG
TGATTAAGGAATTTTCTGTGCCCGCGCCTACATATCCTGTTGATTTGTAT
CATGGCCTTGGACAACTCTCAATGGAAATGGTGACAAGCCCCATTCCTAT
CGAAGAGGTCATCTTGCAGTCCGATGAGGTGGAATACTACTGTGAATCGG
TGAAGCAGTGCATGTGTGCTACTATCAGTTCCAAAAGCCTCAGCCCTCCA
CTTCTATCATATTGCGATCGTCTCGATGAGCTTACCTCGTCGGTTTGTGA
GCAATCAAGAGAGGCACACATCTTTTTTGAATTCTGGAGAACAAAGCAGG
GCGTTGAAGGAATGGCGCTTGTTAATGAATGTGCGCCGGAGATGGCAGAC
CTATTGTAG
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Coding sequence (CDS) from alignment at tig00004433_pilon:265211..266869-

>Gchil1316.t1 ID=Gchil1316.t1|Name=Gchil1316.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1659bp|location=Sequence derived from alignment at tig00004433_pilon:265211..266869- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCCAACTAACTCTAACTCTGGCAACGTTCGCGCTTTGCATCCTCCA
ATCTCGGGCCATCTTCAAGTATGACTTCATCACTCCTACCCGACCCCATG
AAGCTGCCTCTACAGTCATCGAGGAAACCATTGATCCTAGTAATATGCAC
ACCTCCGATTCAATTGGTCAATATGGGTTCTTCCCCAATCGCCACTCCCC
ATCGGCCTCAATATCTCCCTTTCCAAGCATACTTCCAAGTCCAGTGGTGA
TCTCCCCCTACTCTTATGGTCCTACCAAAACGCCGACACCCCTTCCGTCC
ATTCAGACTGTAGGCAGAAGTGACTTTTTATCTTCAGCCGTTTCTGCTCA
GTCTCCTAGAGTTTCCTCTGCTCCAACTTTCGCGGCGGGTGCGGCTTCCT
TCTCTGATGCTACAGTCTCTCCAACACGTTTCTCAACTCTCTCGGGGCCG
GCTCCAAGCCCATCAACTCCGTTCATGAAGCGCGTCATCGCCATTCCACT
TCGCATAGCGAATCGTCGAGCCATACAAAGCCGAAAACCATCCCCACCAA
CCCCGTCTTTTTCTCCACTTTTCGACGTTCAGCCACCTGCTCTATTGCCT
CTAGTACTCCGAACACCATTTCCGTACATAACACCTATACCATCAGAATT
CGTTTCCGTTGCCCAACGGGCCATGAAAGAGGACCAATCTGACTGTGAAG
ACTCCAAAAATGAGGTCAGTGATGGCTCACAAAGCCCGTCACAAACGATT
GGTCTGGAAAAGATGGTTGACCGCAGATATGCCATGGGATACTTGCATTC
CATATTGAGATCTGATCAGACTGTCACGCCCATGCCCCAACGTCCGAAAG
ACCCCATCCAAGCGGAACAGATTATCCCAGACAGCATGCTTCAGAAGATG
TTTAATGCGTCTCCTTTTGATTCGCCAGTATTGACCGCACTGCCATCGTC
AGAATCCTTGATCGATGGTGCCTCACTGCACGCTGTCGAAACGAACCGCT
TGGAAAATGCAATGGAGTACAACACCCCATCCTCCACATATCCCATCCTC
ATTCCTGAGATCGGGAAGACCCATGTCCACTCAGTCTTTCCCTCTCCAGC
CCCATCTCAATTTGAAAAGGACAAAGTTAGAATGATTCACCACCATCGAC
TTCCCATGATCATATTGAAGAAAGAAACGATCACAACAGAAGAGTCCTCT
TTGCGCACCAAAGATAGCAATTATTTGCCGTTCTTGCACACTACAGCTCC
TGACCCATCGATCTCGGTGAACGCCCATTACGCATATCCCACCCCTCTGG
TGATTAAGGAATTTTCTGTGCCCGCGCCTACATATCCTGTTGATTTGTAT
CATGGCCTTGGACAACTCTCAATGGAAATGGTGACAAGCCCCATTCCTAT
CGAAGAGGTCATCTTGCAGTCCGATGAGGTGGAATACTACTGTGAATCGG
TGAAGCAGTGCATGTGTGCTACTATCAGTTCCAAAAGCCTCAGCCCTCCA
CTTCTATCATATTGCGATCGTCTCGATGAGCTTACCTCGTCGGTTTGTGA
GCAATCAAGAGAGGCACACATCTTTTTTGAATTCTGGAGAACAAAGCAGG
GCGTTGAAGGAATGGCGCTTGTTAATGAATGTGCGCCGGAGATGGCAGAC
CTATTGTAG
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