Gchil692.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil692.t2
Unique NameGchil692.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length511
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004431_piloncontigtig00004431_pilon:146599..148212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog161934.XP_010685781.1
PFAMsDKCLD,PUA,TruB_C_2,TruB_N
Max annot lvl35493|Streptophyta
KEGG koko:K11131
KEGG Pathwayko03008,map03008
KEGG ModuleM00425
GOsGO:0000154,GO:0000495,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009506,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016556,GO:0016853,GO:0016866,GO:0022613,GO:0030054,GO:0031118,GO:0031120,GO:0031123,GO:0031126,GO:0031429,GO:0031974,GO:0031981,GO:0032991,GO:0033979,GO:0034470,GO:0034641,GO:0034660,GO:0034964,GO:0040031,GO:0042254,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0055044,GO:0070013,GO:0071704,GO:0071840,GO:0072588,GO:0090304,GO:1901360,GO:1902494,GO:1990481,GO:1990904
Evalue7.6e-205
EggNOG OGsCOG0130@1|root,KOG2529@2759|Eukaryota,37JSV@33090|Viridiplantae,3GDKJ@35493|Streptophyta
DescriptionH ACA ribonucleoprotein complex subunit
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil692Gchil692Gracilaria chilensis NLEC103_M9 malegenetig00004431_pilon 146577..148212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil692.t2Gchil692.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004431_pilon 146599..148212 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil692.t2.start1Gchil692.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004431_pilon 146599..146601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil692.t2.CDS1Gchil692.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004431_pilon 146599..146642 +
Gchil692.t2.CDS2Gchil692.t2.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004431_pilon 146724..148212 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil692.t2.exon1Gchil692.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004431_pilon 146599..146642 +
Gchil692.t2.exon2Gchil692.t2.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004431_pilon 146724..148212 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil692.t2.intron1Gchil692.t2.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004431_pilon 146643..146723 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil692.t2.stop1Gchil692.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004431_pilon 148210..148212 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil692.t2 ID=Gchil692.t2|Name=Gchil692.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=511bp
MNRSKKNLSSNHSHLLIFAFFFPLSNHRLILQRPELDTSQWPLLLKDYDK
LNVRSSHFTPIPVGHSPLKRPILEYMRYGVINLDKPSNPSSHEVVAWIKR
ILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYIGVLKLHG
DLGENPVSKLRRAVEMLTGALFQRPPLISAVKRQLRIRTIYEAKLLEYDE
KKRLAVFWVKCEAGTYIRTLCVHLGYILGVGGSMLELRRVRSGIMGEEEN
MVTLHDVLDAMWVHDNQRDESYLRSVIQPLEALLVNFKRIVVKDTAVNAI
CYGAVLMIPGVLRFDDDIEVSQEIVLITTKGEAIAIAIAEMHTAVIATCD
HGRVARIKRVIMERDTYPRAWGLGPVAGKKKGLIREGKLDKHGKPNEKTP
TDWQNSYKDLTTRQKDQEASQNASAILPENGEVQARVNGSEGKTEEIAHD
NTPGMEVEDATTPENKRDKKRKKDKSSKKKRKRETADGSESEKKKKKKKK
KKESQSSTED*
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spliced messenger RNA

>Gchil692.t2 ID=Gchil692.t2|Name=Gchil692.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00004431_pilon:146599..148212+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAGATCCAAGAAGAATTTGTCCTCAAACCACTCGCATCTTCTAAT
CTTTGCTTTCTTTTTCCCTCTCTCAAACCACCGTCTTATATTGCAGAGGC
CCGAACTCGACACCTCACAGTGGCCTTTACTCCTCAAGGATTATGACAAG
CTTAATGTGCGGTCTTCTCACTTTACTCCCATCCCAGTTGGCCACTCGCC
TCTCAAGAGACCCATACTAGAATACATGCGTTATGGCGTCATAAACCTCG
ATAAACCGTCCAATCCGTCCTCCCACGAAGTTGTTGCATGGATCAAGAGA
ATCCTCCGTGTTGACAAGACTGGTCACTCTGGTACACTTGACCCAAAGGT
TACTGGAAATCTAATTGTCTGTATCGACCGCGCCACGCGGTTAGTAAAGT
CTCAGCAGGGTGCAGGAAAGGAGTACATTGGAGTACTGAAGCTTCATGGT
GACTTAGGAGAAAATCCAGTATCAAAACTGCGAAGAGCTGTCGAGATGCT
CACGGGTGCGTTGTTTCAAAGACCGCCTCTCATATCAGCAGTGAAGAGAC
AACTTCGTATTCGGACTATCTATGAGGCAAAGCTTCTTGAATATGACGAG
AAGAAGCGTCTCGCAGTTTTTTGGGTCAAATGCGAAGCTGGAACTTATAT
CCGTACTCTGTGTGTACATCTAGGCTATATCTTAGGGGTAGGCGGTAGTA
TGCTGGAATTGCGCCGCGTTCGCAGTGGAATCATGGGAGAGGAGGAAAAC
ATGGTGACTTTGCATGATGTTCTGGATGCAATGTGGGTTCACGACAACCA
AAGAGACGAGTCATACTTGCGATCTGTCATCCAACCCCTCGAGGCTCTCC
TTGTCAACTTCAAGCGTATCGTCGTGAAGGACACGGCCGTAAATGCCATT
TGTTATGGCGCTGTGCTCATGATTCCAGGCGTACTGCGTTTCGATGATGA
CATCGAAGTATCTCAGGAAATAGTGTTGATCACAACGAAAGGAGAGGCTA
TTGCAATCGCAATTGCTGAGATGCACACAGCCGTCATTGCTACTTGTGAT
CACGGACGGGTGGCTCGGATCAAACGTGTTATAATGGAGAGGGATACCTA
CCCTCGCGCATGGGGCCTTGGACCTGTTGCTGGGAAGAAGAAAGGACTGA
TACGAGAGGGAAAACTCGACAAGCATGGAAAACCCAACGAGAAGACACCT
ACCGACTGGCAGAATTCCTACAAAGATTTGACCACTCGACAGAAGGACCA
AGAGGCATCTCAAAATGCATCTGCGATCTTACCAGAGAATGGTGAAGTTC
AAGCTCGCGTAAATGGCTCGGAAGGGAAAACAGAAGAAATTGCACACGAC
AATACACCCGGCATGGAAGTTGAAGACGCCACAACTCCCGAAAACAAGCG
CGATAAAAAGAGAAAAAAAGACAAGTCTTCAAAGAAGAAAAGGAAAAGAG
AAACGGCGGACGGGTCAGAGTCTGagaagaagaagaagaagaagaagaag
aagaagGAGTCGCAGTCTTCCACTGAGGATTGA
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protein sequence of Gchil692.t2

>Gchil692.t2 ID=Gchil692.t2|Name=Gchil692.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=511bp
MNRSKKNLSSNHSHLLIFAFFFPLSNHRLILQRPELDTSQWPLLLKDYDK
LNVRSSHFTPIPVGHSPLKRPILEYMRYGVINLDKPSNPSSHEVVAWIKR
ILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYIGVLKLHG
DLGENPVSKLRRAVEMLTGALFQRPPLISAVKRQLRIRTIYEAKLLEYDE
KKRLAVFWVKCEAGTYIRTLCVHLGYILGVGGSMLELRRVRSGIMGEEEN
MVTLHDVLDAMWVHDNQRDESYLRSVIQPLEALLVNFKRIVVKDTAVNAI
CYGAVLMIPGVLRFDDDIEVSQEIVLITTKGEAIAIAIAEMHTAVIATCD
HGRVARIKRVIMERDTYPRAWGLGPVAGKKKGLIREGKLDKHGKPNEKTP
TDWQNSYKDLTTRQKDQEASQNASAILPENGEVQARVNGSEGKTEEIAHD
NTPGMEVEDATTPENKRDKKRKKDKSSKKKRKRETADGSESEKKKKKKKK
KKESQSSTED*
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mRNA from alignment at tig00004431_pilon:146599..148212+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil692.t2 ID=Gchil692.t2|Name=Gchil692.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at tig00004431_pilon:146599..148212+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACAGATCCAAGAAGAATTTGTCCTCAAACCACTCGCATCTGTACGT
TCCCTCTGTCTTGTCTCCTATACGCTATTGATTACACCTCTTTTGTTTTA
TAACGCTCTAGCTGATGTTCCGCAGTCTAATCTTTGCTTTCTTTTTCCCT
CTCTCAAACCACCGTCTTATATTGCAGAGGCCCGAACTCGACACCTCACA
GTGGCCTTTACTCCTCAAGGATTATGACAAGCTTAATGTGCGGTCTTCTC
ACTTTACTCCCATCCCAGTTGGCCACTCGCCTCTCAAGAGACCCATACTA
GAATACATGCGTTATGGCGTCATAAACCTCGATAAACCGTCCAATCCGTC
CTCCCACGAAGTTGTTGCATGGATCAAGAGAATCCTCCGTGTTGACAAGA
CTGGTCACTCTGGTACACTTGACCCAAAGGTTACTGGAAATCTAATTGTC
TGTATCGACCGCGCCACGCGGTTAGTAAAGTCTCAGCAGGGTGCAGGAAA
GGAGTACATTGGAGTACTGAAGCTTCATGGTGACTTAGGAGAAAATCCAG
TATCAAAACTGCGAAGAGCTGTCGAGATGCTCACGGGTGCGTTGTTTCAA
AGACCGCCTCTCATATCAGCAGTGAAGAGACAACTTCGTATTCGGACTAT
CTATGAGGCAAAGCTTCTTGAATATGACGAGAAGAAGCGTCTCGCAGTTT
TTTGGGTCAAATGCGAAGCTGGAACTTATATCCGTACTCTGTGTGTACAT
CTAGGCTATATCTTAGGGGTAGGCGGTAGTATGCTGGAATTGCGCCGCGT
TCGCAGTGGAATCATGGGAGAGGAGGAAAACATGGTGACTTTGCATGATG
TTCTGGATGCAATGTGGGTTCACGACAACCAAAGAGACGAGTCATACTTG
CGATCTGTCATCCAACCCCTCGAGGCTCTCCTTGTCAACTTCAAGCGTAT
CGTCGTGAAGGACACGGCCGTAAATGCCATTTGTTATGGCGCTGTGCTCA
TGATTCCAGGCGTACTGCGTTTCGATGATGACATCGAAGTATCTCAGGAA
ATAGTGTTGATCACAACGAAAGGAGAGGCTATTGCAATCGCAATTGCTGA
GATGCACACAGCCGTCATTGCTACTTGTGATCACGGACGGGTGGCTCGGA
TCAAACGTGTTATAATGGAGAGGGATACCTACCCTCGCGCATGGGGCCTT
GGACCTGTTGCTGGGAAGAAGAAAGGACTGATACGAGAGGGAAAACTCGA
CAAGCATGGAAAACCCAACGAGAAGACACCTACCGACTGGCAGAATTCCT
ACAAAGATTTGACCACTCGACAGAAGGACCAAGAGGCATCTCAAAATGCA
TCTGCGATCTTACCAGAGAATGGTGAAGTTCAAGCTCGCGTAAATGGCTC
GGAAGGGAAAACAGAAGAAATTGCACACGACAATACACCCGGCATGGAAG
TTGAAGACGCCACAACTCCCGAAAACAAGCGCGATAAAAAGAGAAAAAAA
GACAAGTCTTCAAAGAAGAAAAGGAAAAGAGAAACGGCGGACGGGTCAGA
GTCTGagaagaagaagaagaagaagaagaagaagaagGAGTCGCAGTCTT
CCACTGAGGATTGA
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Coding sequence (CDS) from alignment at tig00004431_pilon:146599..148212+

>Gchil692.t2 ID=Gchil692.t2|Name=Gchil692.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1533bp|location=Sequence derived from alignment at tig00004431_pilon:146599..148212+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACAGATCCAAGAAGAATTTGTCCTCAAACCACTCGCATCTTCTAAT
CTTTGCTTTCTTTTTCCCTCTCTCAAACCACCGTCTTATATTGCAGAGGC
CCGAACTCGACACCTCACAGTGGCCTTTACTCCTCAAGGATTATGACAAG
CTTAATGTGCGGTCTTCTCACTTTACTCCCATCCCAGTTGGCCACTCGCC
TCTCAAGAGACCCATACTAGAATACATGCGTTATGGCGTCATAAACCTCG
ATAAACCGTCCAATCCGTCCTCCCACGAAGTTGTTGCATGGATCAAGAGA
ATCCTCCGTGTTGACAAGACTGGTCACTCTGGTACACTTGACCCAAAGGT
TACTGGAAATCTAATTGTCTGTATCGACCGCGCCACGCGGTTAGTAAAGT
CTCAGCAGGGTGCAGGAAAGGAGTACATTGGAGTACTGAAGCTTCATGGT
GACTTAGGAGAAAATCCAGTATCAAAACTGCGAAGAGCTGTCGAGATGCT
CACGGGTGCGTTGTTTCAAAGACCGCCTCTCATATCAGCAGTGAAGAGAC
AACTTCGTATTCGGACTATCTATGAGGCAAAGCTTCTTGAATATGACGAG
AAGAAGCGTCTCGCAGTTTTTTGGGTCAAATGCGAAGCTGGAACTTATAT
CCGTACTCTGTGTGTACATCTAGGCTATATCTTAGGGGTAGGCGGTAGTA
TGCTGGAATTGCGCCGCGTTCGCAGTGGAATCATGGGAGAGGAGGAAAAC
ATGGTGACTTTGCATGATGTTCTGGATGCAATGTGGGTTCACGACAACCA
AAGAGACGAGTCATACTTGCGATCTGTCATCCAACCCCTCGAGGCTCTCC
TTGTCAACTTCAAGCGTATCGTCGTGAAGGACACGGCCGTAAATGCCATT
TGTTATGGCGCTGTGCTCATGATTCCAGGCGTACTGCGTTTCGATGATGA
CATCGAAGTATCTCAGGAAATAGTGTTGATCACAACGAAAGGAGAGGCTA
TTGCAATCGCAATTGCTGAGATGCACACAGCCGTCATTGCTACTTGTGAT
CACGGACGGGTGGCTCGGATCAAACGTGTTATAATGGAGAGGGATACCTA
CCCTCGCGCATGGGGCCTTGGACCTGTTGCTGGGAAGAAGAAAGGACTGA
TACGAGAGGGAAAACTCGACAAGCATGGAAAACCCAACGAGAAGACACCT
ACCGACTGGCAGAATTCCTACAAAGATTTGACCACTCGACAGAAGGACCA
AGAGGCATCTCAAAATGCATCTGCGATCTTACCAGAGAATGGTGAAGTTC
AAGCTCGCGTAAATGGCTCGGAAGGGAAAACAGAAGAAATTGCACACGAC
AATACACCCGGCATGGAAGTTGAAGACGCCACAACTCCCGAAAACAAGCG
CGATAAAAAGAGAAAAAAAGACAAGTCTTCAAAGAAGAAAAGGAAAAGAG
AAACGGCGGACGGGTCAGAGTCTGagaagaagaagaagaagaagaagaag
aagaagGAGTCGCAGTCTTCCACTGAGGATTGA
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