Gchil6416.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6416.t1
Unique NameGchil6416.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length99
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004428_piloncontigtig00004428_pilon:35783..36825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6416Gchil6416Gracilaria chilensis NLEC103_M9 malegenetig00004428_pilon 35783..36825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6416.t1Gchil6416.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004428_pilon 35783..36825 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6416.t1.start1Gchil6416.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004428_pilon 35783..35785 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6416.t1.CDS1Gchil6416.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004428_pilon 35783..35859 +
Gchil6416.t1.CDS2Gchil6416.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004428_pilon 36606..36825 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6416.t1.exon1Gchil6416.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004428_pilon 35783..35859 +
Gchil6416.t1.exon2Gchil6416.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004428_pilon 36606..36825 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6416.t1.intron1Gchil6416.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004428_pilon 35860..36605 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6416.t1.stop1Gchil6416.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004428_pilon 36823..36825 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6416.t1 ID=Gchil6416.t1|Name=Gchil6416.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=99bp
MVLLKPFKNEEEVWKTGKGGVPGFAAWSTLTFLLQWIIPTLLKLRLLNSS
DSEAATQTPELAWITIFMNCIMIFTEHIISSPETNDDSVNQPRYGILS*
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spliced messenger RNA

>Gchil6416.t1 ID=Gchil6416.t1|Name=Gchil6416.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=297bp|location=Sequence derived from alignment at tig00004428_pilon:35783..36825+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTATTGCTCAAACCGTTCAAAAATGAAGAGGAGGTGTGGAAAACGGG
GAAGGGAGGTGTTCCCGGGTTTGCTGCATGGTCAACGCTCACATTTCTTC
TACAATGGATTATCCCAACACTATTGAAGCTCCGATTGCTGAACTCCTCA
GACTCAGAAGCTGCAACTCAAACACCGGAACTTGCCTGGATTACGATCTT
CATGAACTGCATCATGATTTTCACAGAACACATTATTTCTTCTCCTGAAA
CGAATGATGATTCTGTCAACCAACCTAGATACGGTATTTTATCCTAG
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protein sequence of Gchil6416.t1

>Gchil6416.t1 ID=Gchil6416.t1|Name=Gchil6416.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=99bp
MVLLKPFKNEEEVWKTGKGGVPGFAAWSTLTFLLQWIIPTLLKLRLLNSS
DSEAATQTPELAWITIFMNCIMIFTEHIISSPETNDDSVNQPRYGILS*
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mRNA from alignment at tig00004428_pilon:35783..36825+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6416.t1 ID=Gchil6416.t1|Name=Gchil6416.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1043bp|location=Sequence derived from alignment at tig00004428_pilon:35783..36825+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTATTGCTCAAACCGTTCAAAAATGAAGAGGAGGTGTGGAAAACGGG
GAAGGGAGGTGTTCCCGGGTTTGCTGCGTACGTTTATACTGAAGACAATG
GGCGACAAATGCAGGGTATTCGCTAATTAGAGTACAATATGGTGACGATA
AACAGCACTGCCGTGAGAACCTCCTCGAGTGGTTATGTTGGGATGCACGA
AGGCGGCATCGGACTCTACGGTGGGCTATTGAGTATATATGATTTCTTCA
AAGCAAGTTTTCCATAATTAACTTCTGCTCCTGAATATGGCACTGACGAT
GGGAGAAGCTTTCATATTCGTTTGGTGTCAATGAATCGATGTCCTTCTTT
AGGCCTACCGAGATTTGCAAACACTATGAATGAAACATTTGAAATGCAAT
TGAGCATTAAATATCTCTTTCCAACCAGCCCTTGACATTTACAAAAGGGT
TAGTCGACGGGTTCCCGTTCACATATAGACGCTTTTGTTGCAGTGGCAGT
ACTGAGTCGTGATCGACGTACGAAATGTAGTATTCTTTTCCGTAGTCAAA
TTCCATGTGACGAATGGCAGCAAGCCTAATGTTTTATGGAGAATTCTGGC
CGAACTAGAGTGTGTGCGGACCAGCTATGGATCCGTCTGACCTTTGCGTT
TCTGCTCATAAGACTCAATACCCATGTTTGGTATTTCCATCTCTTCTTGC
ACAAGCTGAGATCTCTTGAGCAATGAAATAATACAAAGAGCTATGAGGTA
GTTTTATTTATATGAAGCGATATTGAAGGAGCTGAAACCTGTCCGAACAT
AAATTATACTTTTGCCAATGTAGATGGTCAACGCTCACATTTCTTCTACA
ATGGATTATCCCAACACTATTGAAGCTCCGATTGCTGAACTCCTCAGACT
CAGAAGCTGCAACTCAAACACCGGAACTTGCCTGGATTACGATCTTCATG
AACTGCATCATGATTTTCACAGAACACATTATTTCTTCTCCTGAAACGAA
TGATGATTCTGTCAACCAACCTAGATACGGTATTTTATCCTAG
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Coding sequence (CDS) from alignment at tig00004428_pilon:35783..36825+

>Gchil6416.t1 ID=Gchil6416.t1|Name=Gchil6416.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=297bp|location=Sequence derived from alignment at tig00004428_pilon:35783..36825+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTATTGCTCAAACCGTTCAAAAATGAAGAGGAGGTGTGGAAAACGGG
GAAGGGAGGTGTTCCCGGGTTTGCTGCATGGTCAACGCTCACATTTCTTC
TACAATGGATTATCCCAACACTATTGAAGCTCCGATTGCTGAACTCCTCA
GACTCAGAAGCTGCAACTCAAACACCGGAACTTGCCTGGATTACGATCTT
CATGAACTGCATCATGATTTTCACAGAACACATTATTTCTTCTCCTGAAA
CGAATGATGATTCTGTCAACCAACCTAGATACGGTATTTTATCCTAG
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