Gchil4437.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4437.t1
Unique Name	Gchil4437.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	466

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004426_pilon	contig	tig00004426_pilon:325671..327068 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707949.1
PFAMs	Amidinotransf
Max annot lvl	2759\|Eukaryota
Evalue	3.55e-140
EggNOG OGs	COG2235@1\|root,2QU2S@2759\|Eukaryota
Description	Amidinotransferase
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4437	Gchil4437	Gracilaria chilensis NLEC103_M9 male	gene	tig00004426_pilon 325671..327068 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4437.t1.start1	Gchil4437.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004426_pilon 325671..325673 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4437.t1.CDS1	Gchil4437.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004426_pilon 325671..327068 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4437.t1.exon1	Gchil4437.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004426_pilon 325671..327068 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4437.t1.stop1	Gchil4437.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004426_pilon 327066..327068 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4437.t1	Gchil4437.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004426_pilon 325671..327068 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004426_pilon:325671..327068+
coding sequence from alignment at tig00004426_pilon:325671..327068+

mRNA sequence

>Gchil4437.t1 ID=Gchil4437.t1|Name=Gchil4437.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=466bp
MSFSNKRQRKHWPTGQCHENESARIVIVCAPTVLSKMMGSLHPAGALYEK
PVNTRLAVEAHEEFVKVIESRGITVYDVRDILLKNVEWSVGDRVRLEQLA
FKCLTYVYKNVKDSDQDEERCVNAVNGNHDFSGAAGEYYVSDKYKKSVVE
EMGKQQLVDIILTNPTVVISPSQRDTGFTATYQFEPLSNIVFVRDQQITT
RKGIVMAKLRSKQREREVDIMEFCFKKLGLNVIGRIPYPAHLEGGDFFPV
GEKLALIGVGPRSDWGAVEYLLENDLIGSERVAVVKDQFEKLQERMHLDT
VFNILSNDCCIMLNEMMGPDSSTRRMVDVYVKHGRSMEKKSQKSKAVGKH
SLGNYVLEMENVEFSQYMIDQGFTIIPITGDEQLNYGCNMLNLGNGDIIS
IEKKTARRIACSKAFEGTVEFIDFKAVTCMYGGVHCASQVVSRDHVLRSR
AEDSEPKSLLKMQDN*

spliced messenger RNA

>Gchil4437.t1 ID=Gchil4437.t1|Name=Gchil4437.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at tig00004426_pilon:325671..327068+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTTAGCAACAAACGGCAACGCAAGCACTGGCCAACCGGTCAGTG
CCACGAAAACGAAAGCGCACGAATTGTCATTGTATGTGCTCCCACGGTGC
TATCGAAAATGATGGGATCTTTGCATCCAGCTGGAGCGCTATACGAAAAA
CCTGTGAACACCCGCCTTGCAGTTGAAGCACATGAAGAATTCGTCAAAGT
TATTGAAAGTCGTGGTATCACAGTATATGACGTGCGCGACATATTGTTGA
AGAACGTCGAATGGTCGGTTGGCGACAGGGTTCGCTTAGAACAACTGGCA
TTCAAATGTCTCACTTACGTTTACAAAAATGTAAAGGATAGCGACCAAGA
TGAAGAACGTTGTGTGAATGCTGTCAATGGAAACCACGATTTTTCGGGTG
CTGCTGGTGAGTACTATGTTAGTGACAAGTACAAGAAGAGTGTTGTCGAA
GAAATGGGTAAGCAGCAGTTGGTGGACATAATTCTAACAAATCCTACGGT
GGTCATCTCACCCTCTCAAAGAGATACGGGGTTCACGGCAACATATCAGT
TCGAACCTCTGAGCAATATTGTGTTTGTAAGGGACCAGCAGATCACAACG
CGAAAAGGAATTGTAATGGCTAAGCTCCGGTCCAAGCAAAGGGAGCGAGA
AGTTGACATCATGGAGTTTTGTTTCAAGAAGCTTGGTCTAAATGTTATCG
GCCGAATTCCATACCCCGCTCATCTCGAAGGCGGGGACTTCTTTCCAGTC
GGTGAAAAGCTAGCTCTCATTGGAGTCGGTCCCCGTTCCGACTGGGGAGC
TGTCGAGTATCTGCTAGAGAATGACTTGATAGGGAGCGAAAGGGTGGCGG
TCGTGAAAGACCAGTTCGAAAAATTACAAGAAAGAATGCACCTTGACACA
GTATTCAACATCCTCAGTAATGACTGTTGTATCATGCTTAATGAAATGAT
GGGTCCAGATAGCTCAACACGTCGAATGGTTGATGTATATGTAAAACATG
GACGCTCTATGGAGAAGAAGTCGCAGAAGTCGAAGGCAGTAGGTAAGCAT
TCACTAGGCAATTACGTTTTGGAAATGGAGAACGTAGAATTTTCGCAATA
CATGATCGATCAGGGATTCACTATCATACCCATTACCGGGGACGAACAAT
TGAACTACGGTTGTAACATGTTGAACCTTGGAAATGGAGACATTATCTCA
ATCGAGAAGAAGACGGCACGTCGCATTGCATGTTCAAAAGCATTTGAAGG
AACAGTTGAGTTTATAGACTTTAAGGCGGTGACATGCATGTACGGAGGAG
TGCATTGTGCTAGTCAGGTAGTTTCCCGGGACCATGTTTTAAGGTCAAGA
GCTGAAGATTCGGAGCCGAAATCTCTTCTGAAGATGCAGGATAATTAA

protein sequence of Gchil4437.t1

>Gchil4437.t1 ID=Gchil4437.t1|Name=Gchil4437.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=466bp
MSFSNKRQRKHWPTGQCHENESARIVIVCAPTVLSKMMGSLHPAGALYEK
PVNTRLAVEAHEEFVKVIESRGITVYDVRDILLKNVEWSVGDRVRLEQLA
FKCLTYVYKNVKDSDQDEERCVNAVNGNHDFSGAAGEYYVSDKYKKSVVE
EMGKQQLVDIILTNPTVVISPSQRDTGFTATYQFEPLSNIVFVRDQQITT
RKGIVMAKLRSKQREREVDIMEFCFKKLGLNVIGRIPYPAHLEGGDFFPV
GEKLALIGVGPRSDWGAVEYLLENDLIGSERVAVVKDQFEKLQERMHLDT
VFNILSNDCCIMLNEMMGPDSSTRRMVDVYVKHGRSMEKKSQKSKAVGKH
SLGNYVLEMENVEFSQYMIDQGFTIIPITGDEQLNYGCNMLNLGNGDIIS
IEKKTARRIACSKAFEGTVEFIDFKAVTCMYGGVHCASQVVSRDHVLRSR
AEDSEPKSLLKMQDN*

mRNA from alignment at tig00004426_pilon:325671..327068+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4437.t1 ID=Gchil4437.t1|Name=Gchil4437.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at tig00004426_pilon:325671..327068+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTTTAGCAACAAACGGCAACGCAAGCACTGGCCAACCGGTCAGTG
CCACGAAAACGAAAGCGCACGAATTGTCATTGTATGTGCTCCCACGGTGC
TATCGAAAATGATGGGATCTTTGCATCCAGCTGGAGCGCTATACGAAAAA
CCTGTGAACACCCGCCTTGCAGTTGAAGCACATGAAGAATTCGTCAAAGT
TATTGAAAGTCGTGGTATCACAGTATATGACGTGCGCGACATATTGTTGA
AGAACGTCGAATGGTCGGTTGGCGACAGGGTTCGCTTAGAACAACTGGCA
TTCAAATGTCTCACTTACGTTTACAAAAATGTAAAGGATAGCGACCAAGA
TGAAGAACGTTGTGTGAATGCTGTCAATGGAAACCACGATTTTTCGGGTG
CTGCTGGTGAGTACTATGTTAGTGACAAGTACAAGAAGAGTGTTGTCGAA
GAAATGGGTAAGCAGCAGTTGGTGGACATAATTCTAACAAATCCTACGGT
GGTCATCTCACCCTCTCAAAGAGATACGGGGTTCACGGCAACATATCAGT
TCGAACCTCTGAGCAATATTGTGTTTGTAAGGGACCAGCAGATCACAACG
CGAAAAGGAATTGTAATGGCTAAGCTCCGGTCCAAGCAAAGGGAGCGAGA
AGTTGACATCATGGAGTTTTGTTTCAAGAAGCTTGGTCTAAATGTTATCG
GCCGAATTCCATACCCCGCTCATCTCGAAGGCGGGGACTTCTTTCCAGTC
GGTGAAAAGCTAGCTCTCATTGGAGTCGGTCCCCGTTCCGACTGGGGAGC
TGTCGAGTATCTGCTAGAGAATGACTTGATAGGGAGCGAAAGGGTGGCGG
TCGTGAAAGACCAGTTCGAAAAATTACAAGAAAGAATGCACCTTGACACA
GTATTCAACATCCTCAGTAATGACTGTTGTATCATGCTTAATGAAATGAT
GGGTCCAGATAGCTCAACACGTCGAATGGTTGATGTATATGTAAAACATG
GACGCTCTATGGAGAAGAAGTCGCAGAAGTCGAAGGCAGTAGGTAAGCAT
TCACTAGGCAATTACGTTTTGGAAATGGAGAACGTAGAATTTTCGCAATA
CATGATCGATCAGGGATTCACTATCATACCCATTACCGGGGACGAACAAT
TGAACTACGGTTGTAACATGTTGAACCTTGGAAATGGAGACATTATCTCA
ATCGAGAAGAAGACGGCACGTCGCATTGCATGTTCAAAAGCATTTGAAGG
AACAGTTGAGTTTATAGACTTTAAGGCGGTGACATGCATGTACGGAGGAG
TGCATTGTGCTAGTCAGGTAGTTTCCCGGGACCATGTTTTAAGGTCAAGA
GCTGAAGATTCGGAGCCGAAATCTCTTCTGAAGATGCAGGATAATTAA

Coding sequence (CDS) from alignment at tig00004426_pilon:325671..327068+

>Gchil4437.t1 ID=Gchil4437.t1|Name=Gchil4437.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1398bp|location=Sequence derived from alignment at tig00004426_pilon:325671..327068+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTTTAGCAACAAACGGCAACGCAAGCACTGGCCAACCGGTCAGTG
CCACGAAAACGAAAGCGCACGAATTGTCATTGTATGTGCTCCCACGGTGC
TATCGAAAATGATGGGATCTTTGCATCCAGCTGGAGCGCTATACGAAAAA
CCTGTGAACACCCGCCTTGCAGTTGAAGCACATGAAGAATTCGTCAAAGT
TATTGAAAGTCGTGGTATCACAGTATATGACGTGCGCGACATATTGTTGA
AGAACGTCGAATGGTCGGTTGGCGACAGGGTTCGCTTAGAACAACTGGCA
TTCAAATGTCTCACTTACGTTTACAAAAATGTAAAGGATAGCGACCAAGA
TGAAGAACGTTGTGTGAATGCTGTCAATGGAAACCACGATTTTTCGGGTG
CTGCTGGTGAGTACTATGTTAGTGACAAGTACAAGAAGAGTGTTGTCGAA
GAAATGGGTAAGCAGCAGTTGGTGGACATAATTCTAACAAATCCTACGGT
GGTCATCTCACCCTCTCAAAGAGATACGGGGTTCACGGCAACATATCAGT
TCGAACCTCTGAGCAATATTGTGTTTGTAAGGGACCAGCAGATCACAACG
CGAAAAGGAATTGTAATGGCTAAGCTCCGGTCCAAGCAAAGGGAGCGAGA
AGTTGACATCATGGAGTTTTGTTTCAAGAAGCTTGGTCTAAATGTTATCG
GCCGAATTCCATACCCCGCTCATCTCGAAGGCGGGGACTTCTTTCCAGTC
GGTGAAAAGCTAGCTCTCATTGGAGTCGGTCCCCGTTCCGACTGGGGAGC
TGTCGAGTATCTGCTAGAGAATGACTTGATAGGGAGCGAAAGGGTGGCGG
TCGTGAAAGACCAGTTCGAAAAATTACAAGAAAGAATGCACCTTGACACA
GTATTCAACATCCTCAGTAATGACTGTTGTATCATGCTTAATGAAATGAT
GGGTCCAGATAGCTCAACACGTCGAATGGTTGATGTATATGTAAAACATG
GACGCTCTATGGAGAAGAAGTCGCAGAAGTCGAAGGCAGTAGGTAAGCAT
TCACTAGGCAATTACGTTTTGGAAATGGAGAACGTAGAATTTTCGCAATA
CATGATCGATCAGGGATTCACTATCATACCCATTACCGGGGACGAACAAT
TGAACTACGGTTGTAACATGTTGAACCTTGGAAATGGAGACATTATCTCA
ATCGAGAAGAAGACGGCACGTCGCATTGCATGTTCAAAAGCATTTGAAGG
AACAGTTGAGTTTATAGACTTTAAGGCGGTGACATGCATGTACGGAGGAG
TGCATTGTGCTAGTCAGGTAGTTTCCCGGGACCATGTTTTAAGGTCAAGA
GCTGAAGATTCGGAGCCGAAATCTCTTCTGAAGATGCAGGATAATTAA