Gchil4528.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4528.t1
Unique NameGchil4528.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:898935..899783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_05885T0
PFAMsAbhydrolase_3,zf-RING_2
Max annot lvl2759|Eukaryota
KEGG koko:K15692
Evalue2.75e-10
EggNOG OGsCOG2272@1|root,KOG4628@1|root,KOG1516@2759|Eukaryota,KOG4628@2759|Eukaryota
EC2.3.2.27
Descriptionprotein modification by small protein conjugation or removal
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4528Gchil4528Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 898935..899783 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4528.t1Gchil4528.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 898935..899783 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4528.t1.start1Gchil4528.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 898935..898937 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4528.t1.CDS1Gchil4528.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 898935..899440 +
Gchil4528.t1.CDS2Gchil4528.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 899525..899783 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4528.t1.exon1Gchil4528.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 898935..899440 +
Gchil4528.t1.exon2Gchil4528.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 899525..899783 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4528.t1.intron1Gchil4528.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 899441..899524 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4528.t1.stop1Gchil4528.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 899781..899783 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4528.t1 ID=Gchil4528.t1|Name=Gchil4528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=255bp
MLFPTWRLSASPALYLMHSDLPSLSRQSESNNPAWIIVCVVLAAMLFLVV
TMLVIRFITRARQNPATLAEETESGITQRRADRERLVFAYLPAQAPAIVR
MQRLAKKAGLSTQELDSVAPVSAYARKASDSSDLASNKSGDHVCAVCLEE
MVDGSKTRRLPCGHWFDADCISVWATKANRCPVCNTKIIDEKELERSRLG
SLETADHSTRQSGRRSRGGNAAFELAIVDEPNFLASVSNVPPSRMPPNLV
IASP*
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spliced messenger RNA

>Gchil4528.t1 ID=Gchil4528.t1|Name=Gchil4528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00004426_pilon:898935..899783+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTTTCCTACATGGCGCTTGTCCGCCTCTCCAGCGTTGTATCTCAT
GCACTCTGATTTGCCATCATTATCTCGCCAGTCAGAGAGTAACAACCCTG
CATGGATTATCGTATGCGTCGTGCTGGCTGCGATGCTGTTCTTGGTGGTC
ACTATGTTGGTAATTCGCTTCATTACCCGGGCTCGTCAGAATCCTGCCAC
TCTCGCTGAGGAAACAGAAAGTGGAATCACCCAGCGCCGTGCCGATCGCG
AGCGATTGGTTTTCGCATACCTGCCTGCACAAGCACCCGCCATTGTTCGC
ATGCAGCGCCTCGCAAAAAAGGCCGGTCTTTCCACACAGGAATTGGACTC
TGTGGCACCTGTTTCGGCATATGCGAGAAAAGCCTCTGACTCATCGGACC
TCGCATCGAACAAGAGCGGTGATCACGTGTGTGCTGTTTGCTTGGAGGAA
ATGGTCGACGGTAGCAAAACGCGGCGTCTTCCTTGCGGCCATTGGTTCGA
TGCAGATTGTATCAGCGTATGGGCGACCAAAGCCAATCGCTGTCCAGTTT
GCAATACTAAAATCATTGATGAAAAAGAGTTGGAGCGAAGTCGACTCGGA
TCGCTCGAAACAGCAGACCACAGCACTCGACAAAGCGGAAGACGGAGTCG
CGGAGGAAATGCCGCATTCGAGCTAGCAATTGTGGATGAGCCTAACTTTC
TGGCCTCAGTGAGCAATGTGCCCCCCTCTAGAATGCCACCAAACCTAGTC
ATCGCAAGCCCGTAG
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protein sequence of Gchil4528.t1

>Gchil4528.t1 ID=Gchil4528.t1|Name=Gchil4528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=255bp
MLFPTWRLSASPALYLMHSDLPSLSRQSESNNPAWIIVCVVLAAMLFLVV
TMLVIRFITRARQNPATLAEETESGITQRRADRERLVFAYLPAQAPAIVR
MQRLAKKAGLSTQELDSVAPVSAYARKASDSSDLASNKSGDHVCAVCLEE
MVDGSKTRRLPCGHWFDADCISVWATKANRCPVCNTKIIDEKELERSRLG
SLETADHSTRQSGRRSRGGNAAFELAIVDEPNFLASVSNVPPSRMPPNLV
IASP*
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mRNA from alignment at tig00004426_pilon:898935..899783+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4528.t1 ID=Gchil4528.t1|Name=Gchil4528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=849bp|location=Sequence derived from alignment at tig00004426_pilon:898935..899783+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCTTTCCTACATGGCGCTTGTCCGCCTCTCCAGCGTTGTATCTCAT
GCACTCTGATTTGCCATCATTATCTCGCCAGTCAGAGAGTAACAACCCTG
CATGGATTATCGTATGCGTCGTGCTGGCTGCGATGCTGTTCTTGGTGGTC
ACTATGTTGGTAATTCGCTTCATTACCCGGGCTCGTCAGAATCCTGCCAC
TCTCGCTGAGGAAACAGAAAGTGGAATCACCCAGCGCCGTGCCGATCGCG
AGCGATTGGTTTTCGCATACCTGCCTGCACAAGCACCCGCCATTGTTCGC
ATGCAGCGCCTCGCAAAAAAGGCCGGTCTTTCCACACAGGAATTGGACTC
TGTGGCACCTGTTTCGGCATATGCGAGAAAAGCCTCTGACTCATCGGACC
TCGCATCGAACAAGAGCGGTGATCACGTGTGTGCTGTTTGCTTGGAGGAA
ATGGTCGACGGTAGCAAAACGCGGCGTCTTCCTTGCGGCCATTGGTTCGA
TGCAGAGTACGTTGCGATCGACTATAATGCCTTTAAGCGCCTGAGCGCTC
TTGATTTACTAACAGTTTGTTTCCTTTTGTTCTTGCGTAGTTGTATCAGC
GTATGGGCGACCAAAGCCAATCGCTGTCCAGTTTGCAATACTAAAATCAT
TGATGAAAAAGAGTTGGAGCGAAGTCGACTCGGATCGCTCGAAACAGCAG
ACCACAGCACTCGACAAAGCGGAAGACGGAGTCGCGGAGGAAATGCCGCA
TTCGAGCTAGCAATTGTGGATGAGCCTAACTTTCTGGCCTCAGTGAGCAA
TGTGCCCCCCTCTAGAATGCCACCAAACCTAGTCATCGCAAGCCCGTAG
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Coding sequence (CDS) from alignment at tig00004426_pilon:898935..899783+

>Gchil4528.t1 ID=Gchil4528.t1|Name=Gchil4528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=765bp|location=Sequence derived from alignment at tig00004426_pilon:898935..899783+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCTTTCCTACATGGCGCTTGTCCGCCTCTCCAGCGTTGTATCTCAT
GCACTCTGATTTGCCATCATTATCTCGCCAGTCAGAGAGTAACAACCCTG
CATGGATTATCGTATGCGTCGTGCTGGCTGCGATGCTGTTCTTGGTGGTC
ACTATGTTGGTAATTCGCTTCATTACCCGGGCTCGTCAGAATCCTGCCAC
TCTCGCTGAGGAAACAGAAAGTGGAATCACCCAGCGCCGTGCCGATCGCG
AGCGATTGGTTTTCGCATACCTGCCTGCACAAGCACCCGCCATTGTTCGC
ATGCAGCGCCTCGCAAAAAAGGCCGGTCTTTCCACACAGGAATTGGACTC
TGTGGCACCTGTTTCGGCATATGCGAGAAAAGCCTCTGACTCATCGGACC
TCGCATCGAACAAGAGCGGTGATCACGTGTGTGCTGTTTGCTTGGAGGAA
ATGGTCGACGGTAGCAAAACGCGGCGTCTTCCTTGCGGCCATTGGTTCGA
TGCAGATTGTATCAGCGTATGGGCGACCAAAGCCAATCGCTGTCCAGTTT
GCAATACTAAAATCATTGATGAAAAAGAGTTGGAGCGAAGTCGACTCGGA
TCGCTCGAAACAGCAGACCACAGCACTCGACAAAGCGGAAGACGGAGTCG
CGGAGGAAATGCCGCATTCGAGCTAGCAATTGTGGATGAGCCTAACTTTC
TGGCCTCAGTGAGCAATGTGCCCCCCTCTAGAATGCCACCAAACCTAGTC
ATCGCAAGCCCGTAG
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