Gchil5711.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5711.t1
Unique NameGchil5711.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length494
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:1006892..1008373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29730.Gorai.007G351000.1
PFAMsANAPC4_WD40,WD40
Max annot lvl35493|Streptophyta
KEGG koko:K14320
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
GOsGO:0000003,GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005737,GO:0005783,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006810,GO:0006913,GO:0007610,GO:0007611,GO:0007612,GO:0008150,GO:0009566,GO:0012505,GO:0015630,GO:0016020,GO:0019953,GO:0022414,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046907,GO:0050877,GO:0050890,GO:0051169,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0070013
Evalue2.26e-23
EggNOG OGsKOG2139@1|root,KOG2139@2759|Eukaryota,37KC3@33090|Viridiplantae,3GCQ2@35493|Streptophyta
DescriptionmRNA transport
COG categoryS
BRITEko00000,ko00001,ko00002,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5711Gchil5711Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 1006892..1008373 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5711.t1.start1Gchil5711.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 1006892..1006894 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5711.t1.CDS1Gchil5711.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 1006892..1008373 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5711.t1.exon1Gchil5711.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 1006892..1008373 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5711.t1.stop1Gchil5711.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 1008371..1008373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5711.t1Gchil5711.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 1006892..1008373 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5711.t1 ID=Gchil5711.t1|Name=Gchil5711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=494bp
MVAEPRLANAFAIVGLIPEDHGFRTVAEYRGRLLTVPTRVQRRLQQDEHV
DDITPTQNGSASASNALDESRNGFLEVIDSAKEVDDVLRDLARQVDVAGM
SCYNPRLFHVIRLVPPMYLADTPRAIVVQATPPEDTTLLKRLQTLFNDVW
NGPTSNTEVQMSLLSWHWATDLLAVATGPHLDRICALNFATSTWEASGER
APQLSGTRCIAFRPYAGRSLAIGCDAGVILMEGQNMVQLCEGSHRQVLSL
DWSPDGTRLAASSRENGSVRVWDVATRISAYVGRGSIVRFSPGGFRTYLF
VASSNTPDFLLWSCDTWKYEKWGSLSGSVMAVTWSRDGTTLLFSTQGESA
IHVMKVAQSIGSETQVVHSEVTTLPSEGPGGTPILMELDATGERLAVAYD
VPVPRRTEADASLDFMAEDPHKRFAVALYATQLSPTFLMRPVGYINGPYG
SGPPVALKFKAHVAGIQGAVLSCLWKNGNLSFTQLAFNPSRRK*
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spliced messenger RNA

>Gchil5711.t1 ID=Gchil5711.t1|Name=Gchil5711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000015_pilon:1006892..1008373+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCCGAGCCCCGTCTCGCCAACGCGTTCGCAATAGTTGGCCTCAT
TCCAGAAGATCATGGCTTTCGAACTGTGGCAGAGTACCGCGGACGCCTTC
TAACAGTACCCACCAGAGTCCAACGGCGACTGCAACAAGATGAACATGTT
GACGACATCACACCTACACAGAACGGAAGCGCATCTGCGTCGAATGCTTT
AGATGAATCCCGAAATGGATTCCTGGAGGTTATTGACAGTGCGAAAGAAG
TTGACGATGTGCTTCGAGATCTTGCCAGACAGGTTGATGTGGCGGGCATG
TCATGTTATAACCCTCGTCTTTTCCACGTCATTCGCTTGGTTCCCCCAAT
GTACTTGGCCGATACCCCGAGAGCTATCGTTGTACAAGCCACCCCACCTG
AAGACACAACCCTCCTAAAGCGATTACAAACATTGTTCAACGATGTTTGG
AATGGACCAACGTCAAACACAGAGGTTCAAATGTCCTTGTTATCATGGCA
TTGGGCAACTGACTTGTTAGCTGTTGCCACCGGCCCGCATCTTGATCGTA
TATGTGCTCTCAATTTTGCCACTTCCACTTGGGAAGCCTCAGGGGAACGG
GCGCCACAACTATCTGGAACACGGTGCATTGCATTTCGACCGTATGCGGG
GCGATCTCTGGCAATTGGATGTGATGCGGGCGTCATACTGATGGAAGGGC
AAAATATGGTACAACTCTGTGAAGGTTCGCATCGTCAAGTGCTTTCATTG
GACTGGTCCCCAGACGGTACTCGACTTGCAGCTTCTTCGCGTGAGAACGG
GTCTGTGCGCGTATGGGACGTCGCTACCCGAATATCTGCCTATGTCGGTC
GAGGTTCTATCGTACGATTCAGTCCAGGCGGCTTTCGAACTTATCTTTTT
GTAGCCAGCTCTAACACTCCCGACTTTCTCCTTTGGTCATGCGACACATG
GAAATATGAGAAGTGGGGCAGTCTTTCAGGATCCGTCATGGCCGTTACAT
GGTCGAGGGATGGAACTACACTGCTGTTCTCAACTCAGGGAGAGAGTGCC
ATTCATGTCATGAAAGTTGCACAAAGTATTGGATCCGAAACGCAAGTAGT
TCATTCCGAAGTAACTACACTGCCAAGCGAAGGCCCAGGCGGCACCCCAA
TTCTCATGGAGTTGGACGCCACTGGAGAACGGCTTGCTGTTGCATATGAC
GTTCCAGTTCCACGTCGTACTGAGGCAGATGCATCGCTCGATTTCATGGC
TGAAGATCCACACAAGAGGTTCGCCGTAGCCTTGTACGCTACACAGCTAT
CTCCCACTTTCCTGATGCGCCCAGTTGGATATATAAATGGGCCATATGGT
AGCGGCCCACCCGTTGCGCTCAAGTTTAAGGCACACGTAGCAGGTATTCA
AGGTGCTGTGTTATCATGCCTTTGGAAGAATGGAAACTTGAGCTTCACAC
AGTTAGCTTTCAACCCTTCTCGACGGAAATAA
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protein sequence of Gchil5711.t1

>Gchil5711.t1 ID=Gchil5711.t1|Name=Gchil5711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=494bp
MVAEPRLANAFAIVGLIPEDHGFRTVAEYRGRLLTVPTRVQRRLQQDEHV
DDITPTQNGSASASNALDESRNGFLEVIDSAKEVDDVLRDLARQVDVAGM
SCYNPRLFHVIRLVPPMYLADTPRAIVVQATPPEDTTLLKRLQTLFNDVW
NGPTSNTEVQMSLLSWHWATDLLAVATGPHLDRICALNFATSTWEASGER
APQLSGTRCIAFRPYAGRSLAIGCDAGVILMEGQNMVQLCEGSHRQVLSL
DWSPDGTRLAASSRENGSVRVWDVATRISAYVGRGSIVRFSPGGFRTYLF
VASSNTPDFLLWSCDTWKYEKWGSLSGSVMAVTWSRDGTTLLFSTQGESA
IHVMKVAQSIGSETQVVHSEVTTLPSEGPGGTPILMELDATGERLAVAYD
VPVPRRTEADASLDFMAEDPHKRFAVALYATQLSPTFLMRPVGYINGPYG
SGPPVALKFKAHVAGIQGAVLSCLWKNGNLSFTQLAFNPSRRK*
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mRNA from alignment at tig00000015_pilon:1006892..1008373+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5711.t1 ID=Gchil5711.t1|Name=Gchil5711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000015_pilon:1006892..1008373+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGCCGAGCCCCGTCTCGCCAACGCGTTCGCAATAGTTGGCCTCAT
TCCAGAAGATCATGGCTTTCGAACTGTGGCAGAGTACCGCGGACGCCTTC
TAACAGTACCCACCAGAGTCCAACGGCGACTGCAACAAGATGAACATGTT
GACGACATCACACCTACACAGAACGGAAGCGCATCTGCGTCGAATGCTTT
AGATGAATCCCGAAATGGATTCCTGGAGGTTATTGACAGTGCGAAAGAAG
TTGACGATGTGCTTCGAGATCTTGCCAGACAGGTTGATGTGGCGGGCATG
TCATGTTATAACCCTCGTCTTTTCCACGTCATTCGCTTGGTTCCCCCAAT
GTACTTGGCCGATACCCCGAGAGCTATCGTTGTACAAGCCACCCCACCTG
AAGACACAACCCTCCTAAAGCGATTACAAACATTGTTCAACGATGTTTGG
AATGGACCAACGTCAAACACAGAGGTTCAAATGTCCTTGTTATCATGGCA
TTGGGCAACTGACTTGTTAGCTGTTGCCACCGGCCCGCATCTTGATCGTA
TATGTGCTCTCAATTTTGCCACTTCCACTTGGGAAGCCTCAGGGGAACGG
GCGCCACAACTATCTGGAACACGGTGCATTGCATTTCGACCGTATGCGGG
GCGATCTCTGGCAATTGGATGTGATGCGGGCGTCATACTGATGGAAGGGC
AAAATATGGTACAACTCTGTGAAGGTTCGCATCGTCAAGTGCTTTCATTG
GACTGGTCCCCAGACGGTACTCGACTTGCAGCTTCTTCGCGTGAGAACGG
GTCTGTGCGCGTATGGGACGTCGCTACCCGAATATCTGCCTATGTCGGTC
GAGGTTCTATCGTACGATTCAGTCCAGGCGGCTTTCGAACTTATCTTTTT
GTAGCCAGCTCTAACACTCCCGACTTTCTCCTTTGGTCATGCGACACATG
GAAATATGAGAAGTGGGGCAGTCTTTCAGGATCCGTCATGGCCGTTACAT
GGTCGAGGGATGGAACTACACTGCTGTTCTCAACTCAGGGAGAGAGTGCC
ATTCATGTCATGAAAGTTGCACAAAGTATTGGATCCGAAACGCAAGTAGT
TCATTCCGAAGTAACTACACTGCCAAGCGAAGGCCCAGGCGGCACCCCAA
TTCTCATGGAGTTGGACGCCACTGGAGAACGGCTTGCTGTTGCATATGAC
GTTCCAGTTCCACGTCGTACTGAGGCAGATGCATCGCTCGATTTCATGGC
TGAAGATCCACACAAGAGGTTCGCCGTAGCCTTGTACGCTACACAGCTAT
CTCCCACTTTCCTGATGCGCCCAGTTGGATATATAAATGGGCCATATGGT
AGCGGCCCACCCGTTGCGCTCAAGTTTAAGGCACACGTAGCAGGTATTCA
AGGTGCTGTGTTATCATGCCTTTGGAAGAATGGAAACTTGAGCTTCACAC
AGTTAGCTTTCAACCCTTCTCGACGGAAATAA
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Coding sequence (CDS) from alignment at tig00000015_pilon:1006892..1008373+

>Gchil5711.t1 ID=Gchil5711.t1|Name=Gchil5711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1482bp|location=Sequence derived from alignment at tig00000015_pilon:1006892..1008373+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGCCGAGCCCCGTCTCGCCAACGCGTTCGCAATAGTTGGCCTCAT
TCCAGAAGATCATGGCTTTCGAACTGTGGCAGAGTACCGCGGACGCCTTC
TAACAGTACCCACCAGAGTCCAACGGCGACTGCAACAAGATGAACATGTT
GACGACATCACACCTACACAGAACGGAAGCGCATCTGCGTCGAATGCTTT
AGATGAATCCCGAAATGGATTCCTGGAGGTTATTGACAGTGCGAAAGAAG
TTGACGATGTGCTTCGAGATCTTGCCAGACAGGTTGATGTGGCGGGCATG
TCATGTTATAACCCTCGTCTTTTCCACGTCATTCGCTTGGTTCCCCCAAT
GTACTTGGCCGATACCCCGAGAGCTATCGTTGTACAAGCCACCCCACCTG
AAGACACAACCCTCCTAAAGCGATTACAAACATTGTTCAACGATGTTTGG
AATGGACCAACGTCAAACACAGAGGTTCAAATGTCCTTGTTATCATGGCA
TTGGGCAACTGACTTGTTAGCTGTTGCCACCGGCCCGCATCTTGATCGTA
TATGTGCTCTCAATTTTGCCACTTCCACTTGGGAAGCCTCAGGGGAACGG
GCGCCACAACTATCTGGAACACGGTGCATTGCATTTCGACCGTATGCGGG
GCGATCTCTGGCAATTGGATGTGATGCGGGCGTCATACTGATGGAAGGGC
AAAATATGGTACAACTCTGTGAAGGTTCGCATCGTCAAGTGCTTTCATTG
GACTGGTCCCCAGACGGTACTCGACTTGCAGCTTCTTCGCGTGAGAACGG
GTCTGTGCGCGTATGGGACGTCGCTACCCGAATATCTGCCTATGTCGGTC
GAGGTTCTATCGTACGATTCAGTCCAGGCGGCTTTCGAACTTATCTTTTT
GTAGCCAGCTCTAACACTCCCGACTTTCTCCTTTGGTCATGCGACACATG
GAAATATGAGAAGTGGGGCAGTCTTTCAGGATCCGTCATGGCCGTTACAT
GGTCGAGGGATGGAACTACACTGCTGTTCTCAACTCAGGGAGAGAGTGCC
ATTCATGTCATGAAAGTTGCACAAAGTATTGGATCCGAAACGCAAGTAGT
TCATTCCGAAGTAACTACACTGCCAAGCGAAGGCCCAGGCGGCACCCCAA
TTCTCATGGAGTTGGACGCCACTGGAGAACGGCTTGCTGTTGCATATGAC
GTTCCAGTTCCACGTCGTACTGAGGCAGATGCATCGCTCGATTTCATGGC
TGAAGATCCACACAAGAGGTTCGCCGTAGCCTTGTACGCTACACAGCTAT
CTCCCACTTTCCTGATGCGCCCAGTTGGATATATAAATGGGCCATATGGT
AGCGGCCCACCCGTTGCGCTCAAGTTTAAGGCACACGTAGCAGGTATTCA
AGGTGCTGTGTTATCATGCCTTTGGAAGAATGGAAACTTGAGCTTCACAC
AGTTAGCTTTCAACCCTTCTCGACGGAAATAA
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