Gchil4423.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4423.t1
Unique NameGchil4423.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length200
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:254998..255792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6238.CBG02941
Preferred nameTMEM66
PFAMsSARAF
Max annot lvl33208|Metazoa
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0008150,GO:0010959,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032879,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0051049,GO:0051924,GO:0065007,GO:0098827,GO:2001256
Evalue1.41e-21
EggNOG OGs28KQW@1|root,2QT6Y@2759|Eukaryota,38PN7@33154|Opisthokonta,3BDYH@33208|Metazoa,3CSU9@33213|Bilateria,40DMB@6231|Nematoda,1KW8A@119089|Chromadorea,4104A@6236|Rhabditida
DescriptionSOCE-associated regulatory factor of calcium homoeostasis
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4423Gchil4423Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 254998..255792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4423.t1Gchil4423.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 254998..255792 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4423.t1.stop1Gchil4423.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 254998..255000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4423.t1.CDS1Gchil4423.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 254998..255049 -
Gchil4423.t1.CDS2Gchil4423.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 255145..255208 -
Gchil4423.t1.CDS3Gchil4423.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 255309..255792 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4423.t1.exon1Gchil4423.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 254998..255049 -
Gchil4423.t1.exon2Gchil4423.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 255145..255208 -
Gchil4423.t1.exon3Gchil4423.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 255309..255792 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4423.t1.intron1Gchil4423.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 255050..255144 -
Gchil4423.t1.intron2Gchil4423.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 255209..255308 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4423.t1.start1Gchil4423.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 255790..255792 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4423.t1 ID=Gchil4423.t1|Name=Gchil4423.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=200bp
MKSILISVSLLILLASSCAISNDTRAVTGAGTDSSSSGNDRVLLRSITAL
IFSENGRSRSRYGAGEQQLQCVGGSASGLWWFTEYYPHAVQCQNIGWDGA
SIQWSCEGNLSDQVEFGPDTAVTCEPYDEDQDDGYILKGSCRLEYTINFK
KFHMTFVHIIYACVLILGMLWCYYQSRWWLRRRFRRKQKKRERRAQQSS*
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spliced messenger RNA

>Gchil4423.t1 ID=Gchil4423.t1|Name=Gchil4423.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=600bp|location=Sequence derived from alignment at tig00004426_pilon:254998..255792- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATCTATCTTAATTAGCGTTTCATTACTCATCCTTCTCGCTAGCTC
CTGCGCTATCTCGAACGATACCAGGGCAGTAACAGGGGCCGGAACTGACT
CGTCTTCTTCTGGTAATGACCGCGTTCTTTTGCGATCCATCACTGCATTA
ATTTTTTCCGAGAACGGTAGAAGTCGCTCGAGATATGGAGCCGGTGAGCA
ACAGCTGCAGTGTGTTGGAGGTTCTGCCTCTGGGTTGTGGTGGTTCACGG
AGTACTATCCACATGCCGTGCAGTGTCAGAATATTGGCTGGGATGGGGCT
AGCATTCAGTGGTCTTGTGAAGGCAATCTAAGCGACCAAGTCGAATTCGG
TCCAGACACGGCTGTCACATGCGAGCCTTACGACGAAGACCAGGATGATG
GCTACATCTTGAAAGGTTCATGCCGCTTGGAATATACCATCAATTTCAAG
AAGTTCCACATGACTTTCGTTCATATCATATACGCCTGCGTACTGATTTT
GGGGATGTTGTGGTGTTACTACCAGAGCAGATGGTGGTTGAGGAGACGTT
TTCGACGCAAACAAAAGAAACGTGAGCGCCGTGCTCAGCAATCGTCGTGA
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protein sequence of Gchil4423.t1

>Gchil4423.t1 ID=Gchil4423.t1|Name=Gchil4423.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=200bp
MKSILISVSLLILLASSCAISNDTRAVTGAGTDSSSSGNDRVLLRSITAL
IFSENGRSRSRYGAGEQQLQCVGGSASGLWWFTEYYPHAVQCQNIGWDGA
SIQWSCEGNLSDQVEFGPDTAVTCEPYDEDQDDGYILKGSCRLEYTINFK
KFHMTFVHIIYACVLILGMLWCYYQSRWWLRRRFRRKQKKRERRAQQSS*
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mRNA from alignment at tig00004426_pilon:254998..255792-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4423.t1 ID=Gchil4423.t1|Name=Gchil4423.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00004426_pilon:254998..255792- (Gracilaria chilensis NLEC103_M9 male)
ATGAAATCTATCTTAATTAGCGTTTCATTACTCATCCTTCTCGCTAGCTC
CTGCGCTATCTCGAACGATACCAGGGCAGTAACAGGGGCCGGAACTGACT
CGTCTTCTTCTGGTAATGACCGCGTTCTTTTGCGATCCATCACTGCATTA
ATTTTTTCCGAGAACGGTAGAAGTCGCTCGAGATATGGAGCCGGTGAGCA
ACAGCTGCAGTGTGTTGGAGGTTCTGCCTCTGGGTTGTGGTGGTTCACGG
AGTACTATCCACATGCCGTGCAGTGTCAGAATATTGGCTGGGATGGGGCT
AGCATTCAGTGGTCTTGTGAAGGCAATCTAAGCGACCAAGTCGAATTCGG
TCCAGACACGGCTGTCACATGCGAGCCTTACGACGAAGACCAGGATGATG
GCTACATCTTGAAAGGTTCATGCCGCTTGGAATATACCATCAATTTCAAG
AAGTTCCACATGACTTTCGTTCATATCATATACGGTGCGTTTTACATATG
TTCAGCCTATGTATAGAAAATGCTTGTGTTTTTCGAACCATTGCACAAAT
CAATGCTGACTCTTCTTTTCTTTGTTCTTCTCAGCCTGCGTACTGATTTT
GGGGATGTTGTGGTGTTACTACCAGAGCAGATGGTGGTTGAGGAGACGGT
AAGTTCTAGCCCCATTTGACTTTCTTTTTAATATTGCAACGTTTTATCCA
ATCAACTGACCATATTCGCAATGCGTTTTCGCTTTGCCAACAGTTTTCGA
CGCAAACAAAAGAAACGTGAGCGCCGTGCTCAGCAATCGTCGTGA
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Coding sequence (CDS) from alignment at tig00004426_pilon:254998..255792-

>Gchil4423.t1 ID=Gchil4423.t1|Name=Gchil4423.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=600bp|location=Sequence derived from alignment at tig00004426_pilon:254998..255792- (Gracilaria chilensis NLEC103_M9 male)
ATGAAATCTATCTTAATTAGCGTTTCATTACTCATCCTTCTCGCTAGCTC
CTGCGCTATCTCGAACGATACCAGGGCAGTAACAGGGGCCGGAACTGACT
CGTCTTCTTCTGGTAATGACCGCGTTCTTTTGCGATCCATCACTGCATTA
ATTTTTTCCGAGAACGGTAGAAGTCGCTCGAGATATGGAGCCGGTGAGCA
ACAGCTGCAGTGTGTTGGAGGTTCTGCCTCTGGGTTGTGGTGGTTCACGG
AGTACTATCCACATGCCGTGCAGTGTCAGAATATTGGCTGGGATGGGGCT
AGCATTCAGTGGTCTTGTGAAGGCAATCTAAGCGACCAAGTCGAATTCGG
TCCAGACACGGCTGTCACATGCGAGCCTTACGACGAAGACCAGGATGATG
GCTACATCTTGAAAGGTTCATGCCGCTTGGAATATACCATCAATTTCAAG
AAGTTCCACATGACTTTCGTTCATATCATATACGCCTGCGTACTGATTTT
GGGGATGTTGTGGTGTTACTACCAGAGCAGATGGTGGTTGAGGAGACGTT
TTCGACGCAAACAAAAGAAACGTGAGCGCCGTGCTCAGCAATCGTCGTGA
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