Gchil4397.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4397.t1
Unique NameGchil4397.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:26384..27046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog379066.GAU_1903
PFAMsCMD
Max annot lvl142182|Gemmatimonadetes
KEGG rclassRC00938
KEGG koko:K01607
KEGG ReactionR03470
KEGG Pathwayko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220
Evalue5.73e-13
EggNOG OGsCOG0599@1|root,COG0599@2|Bacteria,1ZTPF@142182|Gemmatimonadetes
EC4.1.1.44
DescriptionCarboxymuconolactone decarboxylase family
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4397Gchil4397Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 26384..27046 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4397.t1.stop1Gchil4397.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 26384..26386 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4397.t1.CDS1Gchil4397.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 26384..27046 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4397.t1.exon1Gchil4397.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 26384..27046 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4397.t1.start1Gchil4397.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 27044..27046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4397.t1Gchil4397.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 26384..27046 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4397.t1 ID=Gchil4397.t1|Name=Gchil4397.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=221bp
MSNLYPLLIKLSTAPASICTQFRTILLAAGHVASGDVHGVTSAFRYIHPE
HQRKAYELAVVQAMPFIGIPRALHAAAALQILGVVGDPERSTLASIADLE
QRGEHTFNQIYGRNAYRVRKRLKQFHPFVEQWVLTCNYGAMLSRDDVTLR
ERELAAVAVLSVDRCASVQLASHIRGAFKVGATYDEVKMTVEHARVLASD
DDWRSAEAVLQTWDRARYAL*
back to top

spliced messenger RNA

>Gchil4397.t1 ID=Gchil4397.t1|Name=Gchil4397.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=663bp|location=Sequence derived from alignment at tig00004426_pilon:26384..27046- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAACCTCTATCCTCTCCTAATCAAATTGTCAACTGCACCAGCATC
GATTTGCACCCAGTTCCGAACCATTCTGCTGGCAGCAGGCCATGTCGCAA
GCGGAGATGTACACGGTGTCACAAGCGCTTTTCGTTATATTCACCCAGAA
CATCAAAGGAAAGCGTATGAGCTTGCTGTAGTACAAGCGATGCCGTTCAT
TGGAATTCCTCGCGCACTGCACGCAGCCGCGGCCTTACAGATTTTGGGGG
TGGTTGGTGATCCAGAACGATCCACGCTGGCCTCCATTGCAGACCTTGAA
CAAAGGGGTGAGCATACATTCAATCAGATTTACGGGCGCAATGCATACCG
TGTGAGAAAGCGGCTGAAACAGTTTCACCCGTTTGTGGAACAGTGGGTGT
TGACCTGCAACTATGGAGCAATGCTTTCCCGCGACGATGTGACCCTTCGA
GAGCGCGAGTTGGCAGCAGTGGCAGTATTATCCGTCGACAGATGCGCCTC
AGTGCAGTTGGCGAGCCATATCCGCGGGGCATTTAAGGTTGGCGCTACCT
ATGACGAGGTAAAGATGACCGTGGAGCATGCGCGCGTTTTGGCGAGTGAC
GACGATTGGAGGAGTGCGGAGGCGGTGTTACAGACTTGGGATCGTGCTAG
ATATGCGCTCTAA
back to top

protein sequence of Gchil4397.t1

>Gchil4397.t1 ID=Gchil4397.t1|Name=Gchil4397.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=221bp
MSNLYPLLIKLSTAPASICTQFRTILLAAGHVASGDVHGVTSAFRYIHPE
HQRKAYELAVVQAMPFIGIPRALHAAAALQILGVVGDPERSTLASIADLE
QRGEHTFNQIYGRNAYRVRKRLKQFHPFVEQWVLTCNYGAMLSRDDVTLR
ERELAAVAVLSVDRCASVQLASHIRGAFKVGATYDEVKMTVEHARVLASD
DDWRSAEAVLQTWDRARYAL*
back to top

mRNA from alignment at tig00004426_pilon:26384..27046-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4397.t1 ID=Gchil4397.t1|Name=Gchil4397.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=663bp|location=Sequence derived from alignment at tig00004426_pilon:26384..27046- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAAACCTCTATCCTCTCCTAATCAAATTGTCAACTGCACCAGCATC
GATTTGCACCCAGTTCCGAACCATTCTGCTGGCAGCAGGCCATGTCGCAA
GCGGAGATGTACACGGTGTCACAAGCGCTTTTCGTTATATTCACCCAGAA
CATCAAAGGAAAGCGTATGAGCTTGCTGTAGTACAAGCGATGCCGTTCAT
TGGAATTCCTCGCGCACTGCACGCAGCCGCGGCCTTACAGATTTTGGGGG
TGGTTGGTGATCCAGAACGATCCACGCTGGCCTCCATTGCAGACCTTGAA
CAAAGGGGTGAGCATACATTCAATCAGATTTACGGGCGCAATGCATACCG
TGTGAGAAAGCGGCTGAAACAGTTTCACCCGTTTGTGGAACAGTGGGTGT
TGACCTGCAACTATGGAGCAATGCTTTCCCGCGACGATGTGACCCTTCGA
GAGCGCGAGTTGGCAGCAGTGGCAGTATTATCCGTCGACAGATGCGCCTC
AGTGCAGTTGGCGAGCCATATCCGCGGGGCATTTAAGGTTGGCGCTACCT
ATGACGAGGTAAAGATGACCGTGGAGCATGCGCGCGTTTTGGCGAGTGAC
GACGATTGGAGGAGTGCGGAGGCGGTGTTACAGACTTGGGATCGTGCTAG
ATATGCGCTCTAA
back to top

Coding sequence (CDS) from alignment at tig00004426_pilon:26384..27046-

>Gchil4397.t1 ID=Gchil4397.t1|Name=Gchil4397.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=663bp|location=Sequence derived from alignment at tig00004426_pilon:26384..27046- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAAACCTCTATCCTCTCCTAATCAAATTGTCAACTGCACCAGCATC
GATTTGCACCCAGTTCCGAACCATTCTGCTGGCAGCAGGCCATGTCGCAA
GCGGAGATGTACACGGTGTCACAAGCGCTTTTCGTTATATTCACCCAGAA
CATCAAAGGAAAGCGTATGAGCTTGCTGTAGTACAAGCGATGCCGTTCAT
TGGAATTCCTCGCGCACTGCACGCAGCCGCGGCCTTACAGATTTTGGGGG
TGGTTGGTGATCCAGAACGATCCACGCTGGCCTCCATTGCAGACCTTGAA
CAAAGGGGTGAGCATACATTCAATCAGATTTACGGGCGCAATGCATACCG
TGTGAGAAAGCGGCTGAAACAGTTTCACCCGTTTGTGGAACAGTGGGTGT
TGACCTGCAACTATGGAGCAATGCTTTCCCGCGACGATGTGACCCTTCGA
GAGCGCGAGTTGGCAGCAGTGGCAGTATTATCCGTCGACAGATGCGCCTC
AGTGCAGTTGGCGAGCCATATCCGCGGGGCATTTAAGGTTGGCGCTACCT
ATGACGAGGTAAAGATGACCGTGGAGCATGCGCGCGTTTTGGCGAGTGAC
GACGATTGGAGGAGTGCGGAGGCGGTGTTACAGACTTGGGATCGTGCTAG
ATATGCGCTCTAA
back to top