Gchil10938.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10938.t1
Unique NameGchil10938.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004424_piloncontigtig00004424_pilon:567..1165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10938Gchil10938Gracilaria chilensis NLEC103_M9 malegenetig00004424_pilon 567..1165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10938.t1Gchil10938.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004424_pilon 567..1165 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10938.t1.start1Gchil10938.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004424_pilon 567..569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10938.t1.CDS1Gchil10938.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004424_pilon 567..950 +
Gchil10938.t1.CDS2Gchil10938.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004424_pilon 1046..1165 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10938.t1.exon1Gchil10938.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004424_pilon 567..950 +
Gchil10938.t1.exon2Gchil10938.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004424_pilon 1046..1165 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10938.t1.intron1Gchil10938.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004424_pilon 951..1045 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10938.t1.stop1Gchil10938.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004424_pilon 1163..1165 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10938.t1 ID=Gchil10938.t1|Name=Gchil10938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=168bp
MQGMHPSNLAQTGAGVYPVRSMQGVPEAQAQAGFCQQIRDAQQAQAQAHH
QSQQLLAQQIRHRQMVQAYQMLLQRQQEQQRPQNLQNQQQAQPGVQAGGQ
ASVPSRGQEPPKETSAASKRQRSNVGGKMKSSTSPAKTTATAHTFTPTSR
SAGAKNHASPQRVTLKH*
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spliced messenger RNA

>Gchil10938.t1 ID=Gchil10938.t1|Name=Gchil10938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=504bp|location=Sequence derived from alignment at tig00004424_pilon:567..1165+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGGCATGCACCCCAGCAATCTTGCGCAGACCGGGGCGGGCGTCTA
TCCGGTGCGAAGTATGCAAGGCGTACCGGAAGCACAGGCACAAGCTGGTT
TTTGTCAACAAATACGTGATGCACAACAGGCACAGGCACAGGCTCATCAC
CAAAGCCAACAACTGCTTGCTCAGCAGATACGCCATCGTCAAATGGTACA
GGCCTACCAAATGCTGCTGCAACGCCAACAGGAACAACAGCGGCCGCAAA
ATCTGCAAAACCAGCAGCAAGCGCAGCCAGGCGTGCAAGCTGGTGGACAA
GCCAGCGTCCCGAGTAGAGGACAAGAGCCTCCGAAGGAGACCAGTGCTGC
ATCGAAACGTCAGCGATCTAATGTAGGTGGAAAGATGAAGTCTAGCACAT
CGCCCGCGAAGACCACAGCCACTGCCCACACCTTCACCCCTACCTCAAGA
AGCGCgggggccaagaaccacgcttccccacaacgagtaacgctgaagca
ttga
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protein sequence of Gchil10938.t1

>Gchil10938.t1 ID=Gchil10938.t1|Name=Gchil10938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=168bp
MQGMHPSNLAQTGAGVYPVRSMQGVPEAQAQAGFCQQIRDAQQAQAQAHH
QSQQLLAQQIRHRQMVQAYQMLLQRQQEQQRPQNLQNQQQAQPGVQAGGQ
ASVPSRGQEPPKETSAASKRQRSNVGGKMKSSTSPAKTTATAHTFTPTSR
SAGAKNHASPQRVTLKH*
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mRNA from alignment at tig00004424_pilon:567..1165+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10938.t1 ID=Gchil10938.t1|Name=Gchil10938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=599bp|location=Sequence derived from alignment at tig00004424_pilon:567..1165+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGGCATGCACCCCAGCAATCTTGCGCAGACCGGGGCGGGCGTCTA
TCCGGTGCGAAGTATGCAAGGCGTACCGGAAGCACAGGCACAAGCTGGTT
TTTGTCAACAAATACGTGATGCACAACAGGCACAGGCACAGGCTCATCAC
CAAAGCCAACAACTGCTTGCTCAGCAGATACGCCATCGTCAAATGGTACA
GGCCTACCAAATGCTGCTGCAACGCCAACAGGAACAACAGCGGCCGCAAA
ATCTGCAAAACCAGCAGCAAGCGCAGCCAGGCGTGCAAGCTGGTGGACAA
GCCAGCGTCCCGAGTAGAGGACAAGAGCCTCCGAAGGAGACCAGTGCTGC
ATCGAAACGTCAGCGATCTAATGTAGGTGGAAAGGTATGTTTTTTCATCT
TTCACACGTCTCCTCACGATTCAGTGCGACTAACATACATACCATGGTCA
CATTTCTTATTTTCTGCCATCAATGTCAGATGAAGTCTAGCACATCGCCC
GCGAAGACCACAGCCACTGCCCACACCTTCACCCCTACCTCAAGAAGCGC
gggggccaagaaccacgcttccccacaacgagtaacgctgaagcattga
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Coding sequence (CDS) from alignment at tig00004424_pilon:567..1165+

>Gchil10938.t1 ID=Gchil10938.t1|Name=Gchil10938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=504bp|location=Sequence derived from alignment at tig00004424_pilon:567..1165+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGGCATGCACCCCAGCAATCTTGCGCAGACCGGGGCGGGCGTCTA
TCCGGTGCGAAGTATGCAAGGCGTACCGGAAGCACAGGCACAAGCTGGTT
TTTGTCAACAAATACGTGATGCACAACAGGCACAGGCACAGGCTCATCAC
CAAAGCCAACAACTGCTTGCTCAGCAGATACGCCATCGTCAAATGGTACA
GGCCTACCAAATGCTGCTGCAACGCCAACAGGAACAACAGCGGCCGCAAA
ATCTGCAAAACCAGCAGCAAGCGCAGCCAGGCGTGCAAGCTGGTGGACAA
GCCAGCGTCCCGAGTAGAGGACAAGAGCCTCCGAAGGAGACCAGTGCTGC
ATCGAAACGTCAGCGATCTAATGTAGGTGGAAAGATGAAGTCTAGCACAT
CGCCCGCGAAGACCACAGCCACTGCCCACACCTTCACCCCTACCTCAAGA
AGCGCgggggccaagaaccacgcttccccacaacgagtaacgctgaagca
ttga
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