Gchil2278.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2278.t1
Unique NameGchil2278.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length338
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004419_piloncontigtig00004419_pilon:756100..757509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1214101.BN159_6424
Max annot lvl201174|Actinobacteria
Evalue6.99e-38
EggNOG OGsCOG2357@1|root,COG2357@2|Bacteria,2I30R@201174|Actinobacteria
DescriptionRelA SpoT domain protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2278Gchil2278Gracilaria chilensis NLEC103_M9 malegenetig00004419_pilon 756100..757509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2278.t1Gchil2278.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004419_pilon 756100..757509 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2278.t1.start1Gchil2278.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004419_pilon 756100..756102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2278.t1.CDS1Gchil2278.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 756100..756444 +
Gchil2278.t1.CDS2Gchil2278.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 756537..756743 +
Gchil2278.t1.CDS3Gchil2278.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 756851..757064 +
Gchil2278.t1.CDS4Gchil2278.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 757167..757234 +
Gchil2278.t1.CDS5Gchil2278.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 757330..757509 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2278.t1.exon1Gchil2278.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 756100..756444 +
Gchil2278.t1.exon2Gchil2278.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 756537..756743 +
Gchil2278.t1.exon3Gchil2278.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 756851..757064 +
Gchil2278.t1.exon4Gchil2278.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 757167..757234 +
Gchil2278.t1.exon5Gchil2278.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 757330..757509 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2278.t1.intron1Gchil2278.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004419_pilon 756445..756536 +
Gchil2278.t1.intron2Gchil2278.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004419_pilon 756744..756850 +
Gchil2278.t1.intron3Gchil2278.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004419_pilon 757065..757166 +
Gchil2278.t1.intron4Gchil2278.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00004419_pilon 757235..757329 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2278.t1.stop1Gchil2278.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004419_pilon 757507..757509 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2278.t1 ID=Gchil2278.t1|Name=Gchil2278.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=338bp
MIRQLRLLPLLGALLLSTVVANALEIMGAAFSTGHDTLGYRQWYVHSSLQ
QLKSTGANFVQISVYSKMPNLNAMYATQNTDDESIRFIVRKVKSMGFKVF
LKPVVEIEGDTWRGFLAGSPLWFEKVYRPFINHMARIAQQERVEVFSIGS
EYRNSEVQVHEWNKVIDDVKKLYFGRITYIANHDSYKRFQLWHRLHFISI
SAYFQLLPGVRGSSPNLEETKKIWRQKADEIWKWRAQRGLTAQKVVMAEV
GVQSKGDGVVYRVPWDWKVNAPVNFDDQAKMYEGICNAFSDGRWVGGILF
WNWELQPNAGTYYPTAEDYTPQNKPAQQVMRRYFSTR*
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spliced messenger RNA

>Gchil2278.t1 ID=Gchil2278.t1|Name=Gchil2278.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00004419_pilon:756100..757509+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCGCCAGCTCCGACTGTTGCCGCTGTTGGGCGCACTGCTTCTTTC
TACCGTTGTCGCCAATGCGCTTGAAATCATGGGCGCTGCCTTCTCCACTG
GCCACGACACATTGGGCTATCGCCAGTGGTATGTGCACAGCTCGCTGCAA
CAACTAAAGAGCACTGGCGCCAACTTCGTCCAGATCTCCGTGTATTCCAA
GATGCCCAATTTGAACGCCATGTATGCCACCCAGAACACGGATGACGAAT
CCATTCGCTTCATCGTCCGCAAGGTGAAGAGCATGGGCTTCAAAGTGTTT
CTCAAGCCTGTTGTCGAAATTGAGGGCGACACTTGGAGGGGTTTTCTTGC
CGGCAGTCCACTGTGGTTTGAGAAGGTTTATCGACCGTTCATCAATCACA
TGGCACGTATAGCGCAACAGGAGCGCGTCGAGGTCTTCTCTATCGGCTCT
GAGTATCGTAACAGCGAAGTACAAGTCCACGAGTGGAACAAGGTCATAGA
TGATGTGAAAAAACTCTACTTTGGTCGGATTACCTATATTGCTAACCATG
ATTCTTACAAGAGGTTTCAACTATGGCATCGTCTGCACTTCATCTCCATA
TCAGCTTATTTTCAGTTGCTGCCCGGTGTGCGCGGATCTTCTCCAAACTT
GGAAGAGACCAAGAAAATATGGCGTCAAAAAGCTGATGAGATCTGGAAAT
GGCGCGCGCAACGCGGTCTTACCGCCCAGAAGGTGGTCATGGCTGAAGTG
GGCGTTCAAAGCAAGGGCGACGGAGTGGTTTACCGTGTGCCGTGGGATTG
GAAGGTGAACGCGCCGGTCAACTTTGACGATCAGGCGAAAATGTATGAGG
GAATTTGCAATGCGTTCAGCGACGGCCGATGGGTTGGAGGAATTCTCTTT
TGGAACTGGGAGTTGCAGCCGAACGCCGGTACATACTATCCCACTGCGGA
AGATTACACGCCACAGAACAAGCCTGCGCAACAGGTCATGAGGCGTTATT
TCAGCACACGCTGA
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protein sequence of Gchil2278.t1

>Gchil2278.t1 ID=Gchil2278.t1|Name=Gchil2278.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=338bp
MIRQLRLLPLLGALLLSTVVANALEIMGAAFSTGHDTLGYRQWYVHSSLQ
QLKSTGANFVQISVYSKMPNLNAMYATQNTDDESIRFIVRKVKSMGFKVF
LKPVVEIEGDTWRGFLAGSPLWFEKVYRPFINHMARIAQQERVEVFSIGS
EYRNSEVQVHEWNKVIDDVKKLYFGRITYIANHDSYKRFQLWHRLHFISI
SAYFQLLPGVRGSSPNLEETKKIWRQKADEIWKWRAQRGLTAQKVVMAEV
GVQSKGDGVVYRVPWDWKVNAPVNFDDQAKMYEGICNAFSDGRWVGGILF
WNWELQPNAGTYYPTAEDYTPQNKPAQQVMRRYFSTR*
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mRNA from alignment at tig00004419_pilon:756100..757509+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2278.t1 ID=Gchil2278.t1|Name=Gchil2278.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1410bp|location=Sequence derived from alignment at tig00004419_pilon:756100..757509+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCCGCCAGCTCCGACTGTTGCCGCTGTTGGGCGCACTGCTTCTTTC
TACCGTTGTCGCCAATGCGCTTGAAATCATGGGCGCTGCCTTCTCCACTG
GCCACGACACATTGGGCTATCGCCAGTGGTATGTGCACAGCTCGCTGCAA
CAACTAAAGAGCACTGGCGCCAACTTCGTCCAGATCTCCGTGTATTCCAA
GATGCCCAATTTGAACGCCATGTATGCCACCCAGAACACGGATGACGAAT
CCATTCGCTTCATCGTCCGCAAGGTGAAGAGCATGGGCTTCAAAGTGTTT
CTCAAGCCTGTTGTCGAAATTGAGGGCGACACTTGGAGGGGTTTTGTAAG
TTAATGTTTTGTCCTCAATACAAATTGCACTGGTTGACGCGTTGGTACTG
ACAATTTGCATCAATCATCACCTCATTCGGAGAGTAGCTTGCCGGCAGTC
CACTGTGGTTTGAGAAGGTTTATCGACCGTTCATCAATCACATGGCACGT
ATAGCGCAACAGGAGCGCGTCGAGGTCTTCTCTATCGGCTCTGAGTATCG
TAACAGCGAAGTACAAGTCCACGAGTGGAACAAGGTCATAGATGATGTGA
AAAAACTCTACTTTGGTCGGATTACCTATATTGCTAACCATGATGTACGT
GTGCACCTCCCGGTTCTCTATGTGACTGTGTGTATGCGGAGAGAAGATTG
TGCTAACATTCGACCATGTGTCCTTTGACATTCCAAAATCCTTTGGAACA
GTCTTACAAGAGGTTTCAACTATGGCATCGTCTGCACTTCATCTCCATAT
CAGCTTATTTTCAGTTGCTGCCCGGTGTGCGCGGATCTTCTCCAAACTTG
GAAGAGACCAAGAAAATATGGCGTCAAAAAGCTGATGAGATCTGGAAATG
GCGCGCGCAACGCGGTCTTACCGCCCAGAAGGTGGTCATGGCTGAAGTGG
GCGTTCAAAGCAAGGGTAAGCGAACTTCTTTTCGCGCTTCATGGCCATCT
CGGCGGCACTGTGGACATTCTTGAAGCCACTAACATTCTGAAACGATTGC
ATTCGCAAACACAAAAGGCGACGGAGTGGTTTACCGTGTGCCGTGGGATT
GGAAGGTGAACGCGCCGGTCAACTTTGACGATCAGGTGAGTACACTGCCG
TCTCTCCGAATTCAATATTTCTCTCTCCCGCTAGCGTTGTACTAACAAAA
TGTCTCTGATCTTGCCACGCTGGAAAACAGGCGAAAATGTATGAGGGAAT
TTGCAATGCGTTCAGCGACGGCCGATGGGTTGGAGGAATTCTCTTTTGGA
ACTGGGAGTTGCAGCCGAACGCCGGTACATACTATCCCACTGCGGAAGAT
TACACGCCACAGAACAAGCCTGCGCAACAGGTCATGAGGCGTTATTTCAG
CACACGCTGA
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Coding sequence (CDS) from alignment at tig00004419_pilon:756100..757509+

>Gchil2278.t1 ID=Gchil2278.t1|Name=Gchil2278.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1014bp|location=Sequence derived from alignment at tig00004419_pilon:756100..757509+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCCGCCAGCTCCGACTGTTGCCGCTGTTGGGCGCACTGCTTCTTTC
TACCGTTGTCGCCAATGCGCTTGAAATCATGGGCGCTGCCTTCTCCACTG
GCCACGACACATTGGGCTATCGCCAGTGGTATGTGCACAGCTCGCTGCAA
CAACTAAAGAGCACTGGCGCCAACTTCGTCCAGATCTCCGTGTATTCCAA
GATGCCCAATTTGAACGCCATGTATGCCACCCAGAACACGGATGACGAAT
CCATTCGCTTCATCGTCCGCAAGGTGAAGAGCATGGGCTTCAAAGTGTTT
CTCAAGCCTGTTGTCGAAATTGAGGGCGACACTTGGAGGGGTTTTCTTGC
CGGCAGTCCACTGTGGTTTGAGAAGGTTTATCGACCGTTCATCAATCACA
TGGCACGTATAGCGCAACAGGAGCGCGTCGAGGTCTTCTCTATCGGCTCT
GAGTATCGTAACAGCGAAGTACAAGTCCACGAGTGGAACAAGGTCATAGA
TGATGTGAAAAAACTCTACTTTGGTCGGATTACCTATATTGCTAACCATG
ATTCTTACAAGAGGTTTCAACTATGGCATCGTCTGCACTTCATCTCCATA
TCAGCTTATTTTCAGTTGCTGCCCGGTGTGCGCGGATCTTCTCCAAACTT
GGAAGAGACCAAGAAAATATGGCGTCAAAAAGCTGATGAGATCTGGAAAT
GGCGCGCGCAACGCGGTCTTACCGCCCAGAAGGTGGTCATGGCTGAAGTG
GGCGTTCAAAGCAAGGGCGACGGAGTGGTTTACCGTGTGCCGTGGGATTG
GAAGGTGAACGCGCCGGTCAACTTTGACGATCAGGCGAAAATGTATGAGG
GAATTTGCAATGCGTTCAGCGACGGCCGATGGGTTGGAGGAATTCTCTTT
TGGAACTGGGAGTTGCAGCCGAACGCCGGTACATACTATCCCACTGCGGA
AGATTACACGCCACAGAACAAGCCTGCGCAACAGGTCATGAGGCGTTATT
TCAGCACACGCTGA
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