Gchil5382.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5382.t1
Unique Name	Gchil5382.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	259

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004418_pilon	contig	tig00004418_pilon:1342003..1342779 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	28532.XP_010526543.1
Max annot lvl	35493\|Streptophyta
Evalue	2.91e-15
EggNOG OGs	COG0624@1\|root,KOG2275@2759\|Eukaryota,37Q0X@33090\|Viridiplantae,3GEX3@35493\|Streptophyta,3HP58@3699\|Brassicales
Description	aminoacylase activity
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5382	Gchil5382	Gracilaria chilensis NLEC103_M9 male	gene	tig00004418_pilon 1342003..1342779 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5382.t1.start1	Gchil5382.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004418_pilon 1342003..1342005 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5382.t1.CDS1	Gchil5382.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004418_pilon 1342003..1342779 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5382.t1.exon1	Gchil5382.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004418_pilon 1342003..1342779 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5382.t1.stop1	Gchil5382.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004418_pilon 1342777..1342779 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5382.t1	Gchil5382.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004418_pilon 1342003..1342779 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004418_pilon:1342003..1342779+
coding sequence from alignment at tig00004418_pilon:1342003..1342779+

mRNA sequence

>Gchil5382.t1 ID=Gchil5382.t1|Name=Gchil5382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=259bp
MATNGEWFGYEATFSSEGTVLSIPDRYVPDEFRDWGVAPNGFDIVSSSKV
TEDTLYLKHTRALPSVGCEADAVIPEVSVLKWEGPGNGGFSDGCISCGSL
QYDGSPMLTILVSGKERVQLCFRVNEQVGDVTVFRESWGSEFCDGQVLPG
CGGGTRFAEGSKMNISDLLGSWEYESEEVDFSKDSNIRQTSGALSRKSLE
GELVTLPIGLSVRVLQEGGSVLVESGWLHDDKRIVIERQYEEGVLTKIKK
SIERRTKV*

spliced messenger RNA

>Gchil5382.t1 ID=Gchil5382.t1|Name=Gchil5382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=777bp|location=Sequence derived from alignment at tig00004418_pilon:1342003..1342779+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACAAACGGTGAATGGTTTGGATACGAAGCTACGTTTAGCTCAGA
AGGAACTGTACTTTCAATTCCAGACCGCTATGTCCCCGATGAGTTTCGAG
ATTGGGGAGTTGCGCCCAATGGTTTTGACATAGTTTCCAGCTCTAAAGTC
ACCGAAGATACGCTTTACTTGAAACACACGAGGGCATTACCTAGCGTTGG
CTGCGAGGCGGACGCCGTAATACCGGAAGTCTCAGTCCTGAAATGGGAGG
GGCCGGGAAATGGAGGGTTTTCAGATGGTTGCATTTCATGCGGATCACTT
CAATATGATGGGTCTCCGATGCTTACTATACTTGTCAGTGGAAAGGAACG
TGTACAGTTATGTTTCCGTGTCAATGAGCAAGTTGGAGACGTGACCGTTT
TTAGAGAGAGTTGGGGCTCTGAGTTTTGTGATGGACAAGTTCTGCCGGGT
TGTGGGGGCGGGACTCGGTTCGCGGAAGGTTCCAAGATGAACATTTCCGA
CTTGCTTGGATCTTGGGAATACGAATCTGAGGAAGTAGACTTTTCGAAAG
ATTCAAATATTCGACAAACAAGCGGGGCGTTGAGTAGAAAAAGTCTAGAA
GGGGAACTCGTTACGCTTCCCATCGGGTTGTCAGTACGTGTATTACAAGA
AGGAGGTTCAGTTTTGGTTGAATCGGGATGGCTCCATGATGATAAGCGAA
TTGTAATCGAAAGGCAATACGAAGAAGGCGTTTTGACCAAAATTAAGAAG
AGCATCGAACGTCGCACAAAGGTTTAG

protein sequence of Gchil5382.t1

>Gchil5382.t1 ID=Gchil5382.t1|Name=Gchil5382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=259bp
MATNGEWFGYEATFSSEGTVLSIPDRYVPDEFRDWGVAPNGFDIVSSSKV
TEDTLYLKHTRALPSVGCEADAVIPEVSVLKWEGPGNGGFSDGCISCGSL
QYDGSPMLTILVSGKERVQLCFRVNEQVGDVTVFRESWGSEFCDGQVLPG
CGGGTRFAEGSKMNISDLLGSWEYESEEVDFSKDSNIRQTSGALSRKSLE
GELVTLPIGLSVRVLQEGGSVLVESGWLHDDKRIVIERQYEEGVLTKIKK
SIERRTKV*

mRNA from alignment at tig00004418_pilon:1342003..1342779+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5382.t1 ID=Gchil5382.t1|Name=Gchil5382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=777bp|location=Sequence derived from alignment at tig00004418_pilon:1342003..1342779+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAACAAACGGTGAATGGTTTGGATACGAAGCTACGTTTAGCTCAGA
AGGAACTGTACTTTCAATTCCAGACCGCTATGTCCCCGATGAGTTTCGAG
ATTGGGGAGTTGCGCCCAATGGTTTTGACATAGTTTCCAGCTCTAAAGTC
ACCGAAGATACGCTTTACTTGAAACACACGAGGGCATTACCTAGCGTTGG
CTGCGAGGCGGACGCCGTAATACCGGAAGTCTCAGTCCTGAAATGGGAGG
GGCCGGGAAATGGAGGGTTTTCAGATGGTTGCATTTCATGCGGATCACTT
CAATATGATGGGTCTCCGATGCTTACTATACTTGTCAGTGGAAAGGAACG
TGTACAGTTATGTTTCCGTGTCAATGAGCAAGTTGGAGACGTGACCGTTT
TTAGAGAGAGTTGGGGCTCTGAGTTTTGTGATGGACAAGTTCTGCCGGGT
TGTGGGGGCGGGACTCGGTTCGCGGAAGGTTCCAAGATGAACATTTCCGA
CTTGCTTGGATCTTGGGAATACGAATCTGAGGAAGTAGACTTTTCGAAAG
ATTCAAATATTCGACAAACAAGCGGGGCGTTGAGTAGAAAAAGTCTAGAA
GGGGAACTCGTTACGCTTCCCATCGGGTTGTCAGTACGTGTATTACAAGA
AGGAGGTTCAGTTTTGGTTGAATCGGGATGGCTCCATGATGATAAGCGAA
TTGTAATCGAAAGGCAATACGAAGAAGGCGTTTTGACCAAAATTAAGAAG
AGCATCGAACGTCGCACAAAGGTTTAG

Coding sequence (CDS) from alignment at tig00004418_pilon:1342003..1342779+

>Gchil5382.t1 ID=Gchil5382.t1|Name=Gchil5382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=777bp|location=Sequence derived from alignment at tig00004418_pilon:1342003..1342779+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAACAAACGGTGAATGGTTTGGATACGAAGCTACGTTTAGCTCAGA
AGGAACTGTACTTTCAATTCCAGACCGCTATGTCCCCGATGAGTTTCGAG
ATTGGGGAGTTGCGCCCAATGGTTTTGACATAGTTTCCAGCTCTAAAGTC
ACCGAAGATACGCTTTACTTGAAACACACGAGGGCATTACCTAGCGTTGG
CTGCGAGGCGGACGCCGTAATACCGGAAGTCTCAGTCCTGAAATGGGAGG
GGCCGGGAAATGGAGGGTTTTCAGATGGTTGCATTTCATGCGGATCACTT
CAATATGATGGGTCTCCGATGCTTACTATACTTGTCAGTGGAAAGGAACG
TGTACAGTTATGTTTCCGTGTCAATGAGCAAGTTGGAGACGTGACCGTTT
TTAGAGAGAGTTGGGGCTCTGAGTTTTGTGATGGACAAGTTCTGCCGGGT
TGTGGGGGCGGGACTCGGTTCGCGGAAGGTTCCAAGATGAACATTTCCGA
CTTGCTTGGATCTTGGGAATACGAATCTGAGGAAGTAGACTTTTCGAAAG
ATTCAAATATTCGACAAACAAGCGGGGCGTTGAGTAGAAAAAGTCTAGAA
GGGGAACTCGTTACGCTTCCCATCGGGTTGTCAGTACGTGTATTACAAGA
AGGAGGTTCAGTTTTGGTTGAATCGGGATGGCTCCATGATGATAAGCGAA
TTGTAATCGAAAGGCAATACGAAGAAGGCGTTTTGACCAAAATTAAGAAG
AGCATCGAACGTCGCACAAAGGTTTAG