Gchil5300.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5300.t1
Unique NameGchil5300.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length235
Homology
BLAST of Gchil5300.t1 vs. uniprot
Match: A0A2V3IW42_9FLOR (MRP-S28 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IW42_9FLOR)

HSP 1 Score: 260 bits (665), Expect = 2.180e-84
Identity = 146/241 (60.58%), Postives = 181/241 (75.10%), Query Frame = 0
Query:    2 TASRCFAANG-SIDNKKSGDG---ENDSGAVVED--DEFGFEGFEIVDETE--DADPVDQAINMDDEDITPELASDLVARMVEATTRKVTERASASLLPFITPHTISCLRATRISTNKIHTAMPEPYSYPIEKKVTAEINVSSLNLSAPAAEALRVLCGPRWKEGLVRIGCNRFPSLEENRAHIVTQIDKLVATARACVGESLDLRPLRSWDEIKEEVGKIATDEVQEAGDIRHVLGEAKQ 234
            T  RC  +   S  +KK G G   E DS  ++++  +EFG +GFEI++E E  D +   + +  ++EDITPELAS+LVARMVEATTR+++ER SASLL  ITPHTI+CLRA+RISTN I  A  + + +PIEKKVTAEIN+ SLNLS PA  AL +L GPR ++ LV IGCNRFPSLEENRAHIVTQID+LVA A+  VGE+LDLRPL SWDEI+ EV +IA++EV EAG I  VLGE KQ
Sbjct:   19 TVQRCRGSRWLSTGSKKVGKGTGKEEDSSDIIDESEEEFGIDGFEILNEIEEEDVEATLEKVQTEEEDITPELASELVARMVEATTRRMSERTSASLLSCITPHTITCLRASRISTNTIQAAGSDLFKHPIEKKVTAEINIDSLNLSRPARAALEILSGPRLRDNLVHIGCNRFPSLEENRAHIVTQIDRLVAGAKTAVGENLDLRPLHSWDEIRREVNEIASEEVHEAGGIHFVLGETKQ 259          
BLAST of Gchil5300.t1 vs. uniprot
Match: A0A2V3IVU2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVU2_9FLOR)

HSP 1 Score: 92.0 bits (227), Expect = 4.210e-19
Identity = 49/82 (59.76%), Postives = 64/82 (78.05%), Query Frame = 0
Query:   72 ARMVEATTRKVTERASASLLPFITPHTISCLRATRISTNKIHTAMPEPYSYPIEKKVTA---EINVSSLNLSAPAAEALRVL 150
            ARMVEA TR+ TER +AS+LP ITPH+ISCLRATRIST+KI T +PE Y++PIE+KVT+   E+ +  L+ +A  A  LRV+
Sbjct:   97 ARMVEAATRRKTERTTASVLPVITPHSISCLRATRISTSKIETFLPESYTHPIERKVTSSPRELQMIKLHENASKARNLRVV 178          
BLAST of Gchil5300.t1 vs. uniprot
Match: A0A2V3J621_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J621_9FLOR)

HSP 1 Score: 85.9 bits (211), Expect = 1.090e-17
Identity = 45/82 (54.88%), Postives = 63/82 (76.83%), Query Frame = 0
Query:   72 ARMVEATTRKVTERASASLLPFITPHTISCLRATRISTNKIHTAMPEPYSYPIEKKVTA---EINVSSLNLSAPAAEALRVL 150
            A MV+A T + TE+ +AS++P ITPH+ISCLRATRISTNKI   +PEPY++PIEKKVT+   E+ + +L+ +A  +  LRV+
Sbjct:   36 AHMVKAATLRKTEQTTASVIPVITPHSISCLRATRISTNKIDRFVPEPYTHPIEKKVTSSSGELQMITLHENASKSRNLRVV 117          
BLAST of Gchil5300.t1 vs. uniprot
Match: A0A2V3IKT6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKT6_9FLOR)

HSP 1 Score: 88.2 bits (217), Expect = 2.690e-17
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 0
Query:   72 ARMVEATTRKVTERASASLLPFITPHTISCLRATRISTNKIHTAMPEPYSYPIEKKVTA---EINVSSLNLSAPAAEALRVL 150
            ARMVE  +++  ER +AS+LP ITPH+ISCL ATRISTNKI T +PEPY++PIEKKVT+   E+ + +L+ +A  A  LRV+
Sbjct:   97 ARMVETASQRNKERTTASVLPVITPHSISCLPATRISTNKIETFVPEPYTHPIEKKVTSSSRELQMITLHENASKARNLRVV 178          
The following BLAST results are available for this feature:
BLAST of Gchil5300.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IW42_9FLOR2.180e-8460.58MRP-S28 domain-containing protein n=1 Tax=Gracilar... [more]
A0A2V3IVU2_9FLOR4.210e-1959.76Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J621_9FLOR1.090e-1754.88Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IKT6_9FLOR2.690e-1757.32Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019349Ribosomal protein S24/S35, mitochondrial, conserved domainPFAMPF10213MRP-S28coord: 122..191
e-value: 4.2E-11
score: 43.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 6..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:878742..879446 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5300.t1Gchil5300.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 878742..879446 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5300.t1 ID=Gchil5300.t1|Name=Gchil5300.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=235bp
MTASRCFAANGSIDNKKSGDGENDSGAVVEDDEFGFEGFEIVDETEDADP
VDQAINMDDEDITPELASDLVARMVEATTRKVTERASASLLPFITPHTIS
CLRATRISTNKIHTAMPEPYSYPIEKKVTAEINVSSLNLSAPAAEALRVL
CGPRWKEGLVRIGCNRFPSLEENRAHIVTQIDKLVATARACVGESLDLRP
LRSWDEIKEEVGKIATDEVQEAGDIRHVLGEAKQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019349Ribosomal_S24/S35_mit