Gchil5429.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5429.t1
Unique Name	Gchil5429.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	253

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004418_pilon	contig	tig00004418_pilon:1702266..1703024 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ23715
PFAMs	NAD_binding_10
Max annot lvl	35493\|Streptophyta
GOs	GO:0001101,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009737,GO:0010033,GO:0016020,GO:0031090,GO:0033993,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0050896,GO:0071944,GO:0097305,GO:0098588,GO:0098805,GO:1901700
Evalue	1.42e-71
EggNOG OGs	COG0702@1\|root,KOG1203@2759\|Eukaryota,37HNJ@33090\|Viridiplantae,3GFYD@35493\|Streptophyta
Description	NAD(P)-binding Rossmann-fold superfamily protein
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5429	Gchil5429	Gracilaria chilensis NLEC103_M9 male	gene	tig00004418_pilon 1702266..1703024 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5429.t1.stop1	Gchil5429.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004418_pilon 1702266..1702268 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5429.t1.CDS1	Gchil5429.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004418_pilon 1702266..1703024 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5429.t1.exon1	Gchil5429.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004418_pilon 1702266..1703024 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5429.t1.start1	Gchil5429.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004418_pilon 1703022..1703024 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5429.t1	Gchil5429.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004418_pilon 1702266..1703024 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004418_pilon:1702266..1703024-
coding sequence from alignment at tig00004418_pilon:1702266..1703024-

mRNA sequence

>Gchil5429.t1 ID=Gchil5429.t1|Name=Gchil5429.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=253bp
MTLNVILTGAAGRTGRLVFEKLQSHPSDYSVTGLVRDVQAASQVLPPTEN
LVKGDITKPETLQQPFTAKQALIILTSAIPRIIPAPEGTPPQFRYDPDGT
PELVDWIGAKNQIDLAIRLGLKHVIMVGSMGSTEDNNPLNRIGNGNILRF
KRKAELYLIESGISYTIINPAGLSSEQEQERELVVGRNDELFSVFERGQC
TIPRGDVARVVVSALLAPNAKNKAMDLAARPKGDGTVTKDPASLFDLVGS
QI*

spliced messenger RNA

>Gchil5429.t1 ID=Gchil5429.t1|Name=Gchil5429.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00004418_pilon:1702266..1703024- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCTCAACGTCATCCTCACCGGAGCAGCCGGTCGTACCGGCCGCCT
AGTTTTTGAAAAATTACAATCACACCCATCCGACTACTCCGTCACGGGCT
TGGTACGCGATGTGCAAGCTGCCAGCCAAGTGTTGCCGCCCACAGAAAAC
TTAGTTAAAGGAGACATTACAAAGCCCGAAACGCTACAACAGCCTTTCAC
CGCAAAGCAAGCCCTCATAATTCTCACAAGCGCTATACCAAGGATTATTC
CCGCCCCGGAGGGCACTCCACCTCAGTTCAGATACGACCCGGATGGCACC
CCGGAGTTGGTCGACTGGATCGGTGCGAAGAACCAGATCGACTTAGCTAT
TCGTCTCGGCCTCAAACACGTCATAATGGTGGGGTCCATGGGAAGCACAG
AAGACAACAATCCTCTCAATCGTATTGGCAACGGAAACATTTTAAGATTT
AAGAGGAAAGCAGAACTCTATCTAATAGAGTCAGGTATTTCCTACACAAT
AATCAATCCCGCCGGCTTGTCCAGCGAACAGGAGCAAGAGAGAGAACTTG
TTGTCGGACGAAATGATGAGTTGTTCTCAGTGTTCGAAAGGGGTCAGTGT
ACAATTCCACGCGGCGATGTTGCACGTGTTGTAGTCTCTGCACTTCTCGC
CCCCAATGCAAAGAACAAAGCCATGGATCTTGCAGCTAGACCCAAAGGGG
ACGGCACCGTAACTAAAGACCCTGCCTCCCTGTTTGACCTAGTCGGCTCA
CAGATTTAA

protein sequence of Gchil5429.t1

>Gchil5429.t1 ID=Gchil5429.t1|Name=Gchil5429.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=253bp
MTLNVILTGAAGRTGRLVFEKLQSHPSDYSVTGLVRDVQAASQVLPPTEN
LVKGDITKPETLQQPFTAKQALIILTSAIPRIIPAPEGTPPQFRYDPDGT
PELVDWIGAKNQIDLAIRLGLKHVIMVGSMGSTEDNNPLNRIGNGNILRF
KRKAELYLIESGISYTIINPAGLSSEQEQERELVVGRNDELFSVFERGQC
TIPRGDVARVVVSALLAPNAKNKAMDLAARPKGDGTVTKDPASLFDLVGS
QI*

mRNA from alignment at tig00004418_pilon:1702266..1703024-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5429.t1 ID=Gchil5429.t1|Name=Gchil5429.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00004418_pilon:1702266..1703024- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCTCAACGTCATCCTCACCGGAGCAGCCGGTCGTACCGGCCGCCT
AGTTTTTGAAAAATTACAATCACACCCATCCGACTACTCCGTCACGGGCT
TGGTACGCGATGTGCAAGCTGCCAGCCAAGTGTTGCCGCCCACAGAAAAC
TTAGTTAAAGGAGACATTACAAAGCCCGAAACGCTACAACAGCCTTTCAC
CGCAAAGCAAGCCCTCATAATTCTCACAAGCGCTATACCAAGGATTATTC
CCGCCCCGGAGGGCACTCCACCTCAGTTCAGATACGACCCGGATGGCACC
CCGGAGTTGGTCGACTGGATCGGTGCGAAGAACCAGATCGACTTAGCTAT
TCGTCTCGGCCTCAAACACGTCATAATGGTGGGGTCCATGGGAAGCACAG
AAGACAACAATCCTCTCAATCGTATTGGCAACGGAAACATTTTAAGATTT
AAGAGGAAAGCAGAACTCTATCTAATAGAGTCAGGTATTTCCTACACAAT
AATCAATCCCGCCGGCTTGTCCAGCGAACAGGAGCAAGAGAGAGAACTTG
TTGTCGGACGAAATGATGAGTTGTTCTCAGTGTTCGAAAGGGGTCAGTGT
ACAATTCCACGCGGCGATGTTGCACGTGTTGTAGTCTCTGCACTTCTCGC
CCCCAATGCAAAGAACAAAGCCATGGATCTTGCAGCTAGACCCAAAGGGG
ACGGCACCGTAACTAAAGACCCTGCCTCCCTGTTTGACCTAGTCGGCTCA
CAGATTTAA

Coding sequence (CDS) from alignment at tig00004418_pilon:1702266..1703024-

>Gchil5429.t1 ID=Gchil5429.t1|Name=Gchil5429.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=759bp|location=Sequence derived from alignment at tig00004418_pilon:1702266..1703024- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCTCAACGTCATCCTCACCGGAGCAGCCGGTCGTACCGGCCGCCT
AGTTTTTGAAAAATTACAATCACACCCATCCGACTACTCCGTCACGGGCT
TGGTACGCGATGTGCAAGCTGCCAGCCAAGTGTTGCCGCCCACAGAAAAC
TTAGTTAAAGGAGACATTACAAAGCCCGAAACGCTACAACAGCCTTTCAC
CGCAAAGCAAGCCCTCATAATTCTCACAAGCGCTATACCAAGGATTATTC
CCGCCCCGGAGGGCACTCCACCTCAGTTCAGATACGACCCGGATGGCACC
CCGGAGTTGGTCGACTGGATCGGTGCGAAGAACCAGATCGACTTAGCTAT
TCGTCTCGGCCTCAAACACGTCATAATGGTGGGGTCCATGGGAAGCACAG
AAGACAACAATCCTCTCAATCGTATTGGCAACGGAAACATTTTAAGATTT
AAGAGGAAAGCAGAACTCTATCTAATAGAGTCAGGTATTTCCTACACAAT
AATCAATCCCGCCGGCTTGTCCAGCGAACAGGAGCAAGAGAGAGAACTTG
TTGTCGGACGAAATGATGAGTTGTTCTCAGTGTTCGAAAGGGGTCAGTGT
ACAATTCCACGCGGCGATGTTGCACGTGTTGTAGTCTCTGCACTTCTCGC
CCCCAATGCAAAGAACAAAGCCATGGATCTTGCAGCTAGACCCAAAGGGG
ACGGCACCGTAACTAAAGACCCTGCCTCCCTGTTTGACCTAGTCGGCTCA
CAGATTTAA