Gchil5346.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5346.t1
Unique NameGchil5346.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length293
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1176486..1177364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707033.1
Preferred nameDERL1
PFAMsDER1
Max annot lvl2759|Eukaryota
KEGG koko:K11131,ko:K11519,ko:K13989
KEGG Pathwayko03008,ko04141,ko05014,map03008,map04141,map05014
KEGG ModuleM00403,M00425
GOsGO:0000151,GO:0000153,GO:0000835,GO:0000836,GO:0002020,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005783,GO:0005789,GO:0006457,GO:0006464,GO:0006508,GO:0006511,GO:0006515,GO:0006807,GO:0006810,GO:0006886,GO:0006897,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0010941,GO:0010942,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016567,GO:0016787,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022607,GO:0023052,GO:0030163,GO:0030176,GO:0030433,GO:0030968,GO:0030970,GO:0031224,GO:0031227,GO:0031323,GO:0031325,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031625,GO:0031647,GO:0031648,GO:0031982,GO:0031984,GO:0032092,GO:0032268,GO:0032270,GO:0032446,GO:0032527,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036502,GO:0036503,GO:0036513,GO:0038023,GO:0042175,GO:0042221,GO:0042287,GO:0042288,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043393,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048471,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051117,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0051788,GO:0055085,GO:0060089,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070647,GO:0070727,GO:0070887,GO:0071218,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0071712,GO:0071840,GO:0080090,GO:0097038,GO:0097708,GO:0098657,GO:0098796,GO:0098827,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1902494,GO:1903320,GO:1903322,GO:1903513,GO:1990234,GO:1990381
Evalue3.71e-39
EggNOG OGsCOG5291@1|root,KOG0858@2759|Eukaryota
Descriptionubiquitin-dependent ERAD pathway
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5346Gchil5346Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 1176486..1177364 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5346.t1.start1Gchil5346.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 1176486..1176488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5346.t1.CDS1Gchil5346.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1176486..1177364 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5346.t1.exon1Gchil5346.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1176486..1177364 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5346.t1.stop1Gchil5346.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 1177362..1177364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5346.t1Gchil5346.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 1176486..1177364 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5346.t1 ID=Gchil5346.t1|Name=Gchil5346.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=293bp
MSGPTGDVHGTGDFDMKSFIMDIPPVTRTLFIAMFSCTVLTGLKLFPIQP
FALLWIRVVEAMQVWRIPLSFLHMGSLGVGFLIRMYFLYTYSRQLESGVF
FGRPANYAWFLTTVGFFVSVISILIPSYFNGSALLTAIIHLWGKHATSVT
VSLYGFLSIPAKYLSLSMIFIDLIRTGSIPYTDVFGLLGGHIYYFLDSVY
PGMPGGRQVISVPIWFENAIDFLQRTLGSVTGLQRGPPAPISQPSRSTGS
YTSNVSGRWNSGGAASGPRAGVTNPVSRGGHNWGTGHTLGSL*
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spliced messenger RNA

>Gchil5346.t1 ID=Gchil5346.t1|Name=Gchil5346.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00004418_pilon:1176486..1177364+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGGTCCAACTGGCGATGTTCACGGGACTGGAGACTTTGACATGAA
GTCCTTCATCATGGATATACCACCAGTGACTCGCACGCTCTTTATCGCCA
TGTTTTCTTGTACAGTACTTACCGGACTCAAATTGTTTCCAATCCAGCCG
TTTGCTTTACTCTGGATAAGAGTTGTAGAAGCAATGCAGGTCTGGCGCAT
ACCACTGTCTTTTTTGCATATGGGCTCACTTGGAGTTGGGTTCTTGATCC
GTATGTATTTTCTTTACACTTACTCGAGGCAACTGGAATCCGGCGTCTTC
TTCGGTCGTCCAGCAAATTACGCTTGGTTCCTTACAACAGTTGGGTTCTT
TGTATCAGTAATCTCTATTTTGATTCCTTCGTACTTCAATGGAAGTGCTC
TGCTCACTGCAATAATTCATCTATGGGGCAAGCATGCCACTAGCGTCACT
GTATCACTATATGGGTTTTTAAGCATCCCTGCAAAATACCTCTCTCTATC
AATGATATTTATTGATCTCATCCGGACGGGTAGCATCCCTTACACTGATG
TGTTCGGCCTGCTCGGGGGTCATATATATTACTTCCTTGATTCCGTGTAC
CCTGGAATGCCTGGTGGAAGACAAGTCATATCCGTTCCGATCTGGTTCGA
GAATGCAATAGACTTTTTACAGCGAACGCTGGGGTCTGTCACTGGACTAC
AGCGTGGACCACCTGCACCTATTTCCCAGCCTTCGAGAAGTACAGGTAGT
TATACCTCTAATGTGTCTGGAAGATGGAATAGCGGCGGTGCTGCATCTGG
ACCTAGAGCAGGTGTCACGAACCCCGTCTCACGAGGAGGACACAATTGGG
GAACCGGGCATACCCTAGGGTCTTTATAA
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protein sequence of Gchil5346.t1

>Gchil5346.t1 ID=Gchil5346.t1|Name=Gchil5346.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=293bp
MSGPTGDVHGTGDFDMKSFIMDIPPVTRTLFIAMFSCTVLTGLKLFPIQP
FALLWIRVVEAMQVWRIPLSFLHMGSLGVGFLIRMYFLYTYSRQLESGVF
FGRPANYAWFLTTVGFFVSVISILIPSYFNGSALLTAIIHLWGKHATSVT
VSLYGFLSIPAKYLSLSMIFIDLIRTGSIPYTDVFGLLGGHIYYFLDSVY
PGMPGGRQVISVPIWFENAIDFLQRTLGSVTGLQRGPPAPISQPSRSTGS
YTSNVSGRWNSGGAASGPRAGVTNPVSRGGHNWGTGHTLGSL*
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mRNA from alignment at tig00004418_pilon:1176486..1177364+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5346.t1 ID=Gchil5346.t1|Name=Gchil5346.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00004418_pilon:1176486..1177364+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGGTCCAACTGGCGATGTTCACGGGACTGGAGACTTTGACATGAA
GTCCTTCATCATGGATATACCACCAGTGACTCGCACGCTCTTTATCGCCA
TGTTTTCTTGTACAGTACTTACCGGACTCAAATTGTTTCCAATCCAGCCG
TTTGCTTTACTCTGGATAAGAGTTGTAGAAGCAATGCAGGTCTGGCGCAT
ACCACTGTCTTTTTTGCATATGGGCTCACTTGGAGTTGGGTTCTTGATCC
GTATGTATTTTCTTTACACTTACTCGAGGCAACTGGAATCCGGCGTCTTC
TTCGGTCGTCCAGCAAATTACGCTTGGTTCCTTACAACAGTTGGGTTCTT
TGTATCAGTAATCTCTATTTTGATTCCTTCGTACTTCAATGGAAGTGCTC
TGCTCACTGCAATAATTCATCTATGGGGCAAGCATGCCACTAGCGTCACT
GTATCACTATATGGGTTTTTAAGCATCCCTGCAAAATACCTCTCTCTATC
AATGATATTTATTGATCTCATCCGGACGGGTAGCATCCCTTACACTGATG
TGTTCGGCCTGCTCGGGGGTCATATATATTACTTCCTTGATTCCGTGTAC
CCTGGAATGCCTGGTGGAAGACAAGTCATATCCGTTCCGATCTGGTTCGA
GAATGCAATAGACTTTTTACAGCGAACGCTGGGGTCTGTCACTGGACTAC
AGCGTGGACCACCTGCACCTATTTCCCAGCCTTCGAGAAGTACAGGTAGT
TATACCTCTAATGTGTCTGGAAGATGGAATAGCGGCGGTGCTGCATCTGG
ACCTAGAGCAGGTGTCACGAACCCCGTCTCACGAGGAGGACACAATTGGG
GAACCGGGCATACCCTAGGGTCTTTATAA
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Coding sequence (CDS) from alignment at tig00004418_pilon:1176486..1177364+

>Gchil5346.t1 ID=Gchil5346.t1|Name=Gchil5346.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=879bp|location=Sequence derived from alignment at tig00004418_pilon:1176486..1177364+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGGTCCAACTGGCGATGTTCACGGGACTGGAGACTTTGACATGAA
GTCCTTCATCATGGATATACCACCAGTGACTCGCACGCTCTTTATCGCCA
TGTTTTCTTGTACAGTACTTACCGGACTCAAATTGTTTCCAATCCAGCCG
TTTGCTTTACTCTGGATAAGAGTTGTAGAAGCAATGCAGGTCTGGCGCAT
ACCACTGTCTTTTTTGCATATGGGCTCACTTGGAGTTGGGTTCTTGATCC
GTATGTATTTTCTTTACACTTACTCGAGGCAACTGGAATCCGGCGTCTTC
TTCGGTCGTCCAGCAAATTACGCTTGGTTCCTTACAACAGTTGGGTTCTT
TGTATCAGTAATCTCTATTTTGATTCCTTCGTACTTCAATGGAAGTGCTC
TGCTCACTGCAATAATTCATCTATGGGGCAAGCATGCCACTAGCGTCACT
GTATCACTATATGGGTTTTTAAGCATCCCTGCAAAATACCTCTCTCTATC
AATGATATTTATTGATCTCATCCGGACGGGTAGCATCCCTTACACTGATG
TGTTCGGCCTGCTCGGGGGTCATATATATTACTTCCTTGATTCCGTGTAC
CCTGGAATGCCTGGTGGAAGACAAGTCATATCCGTTCCGATCTGGTTCGA
GAATGCAATAGACTTTTTACAGCGAACGCTGGGGTCTGTCACTGGACTAC
AGCGTGGACCACCTGCACCTATTTCCCAGCCTTCGAGAAGTACAGGTAGT
TATACCTCTAATGTGTCTGGAAGATGGAATAGCGGCGGTGCTGCATCTGG
ACCTAGAGCAGGTGTCACGAACCCCGTCTCACGAGGAGGACACAATTGGG
GAACCGGGCATACCCTAGGGTCTTTATAA
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