Gchil5433.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5433.t1
Unique NameGchil5433.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length312
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1709452..1710387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog946362.XP_004997341.1
PFAMsDUF829
Max annot lvl2759|Eukaryota
Evalue3.14e-23
EggNOG OGsKOG2521@1|root,KOG2521@2759|Eukaryota
Descriptiontransmembrane protein 53
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5433Gchil5433Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 1709452..1710387 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5433.t1.stop1Gchil5433.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 1709452..1709454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5433.t1.CDS1Gchil5433.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1709452..1710387 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5433.t1.exon1Gchil5433.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1709452..1710387 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5433.t1.start1Gchil5433.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 1710385..1710387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5433.t1Gchil5433.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 1709452..1710387 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5433.t1 ID=Gchil5433.t1|Name=Gchil5433.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=312bp
MHPVEQYHKKTNTGHPVRIRIPAAASAAAAAPTAVLVGWLGASLNNLAKY
AAIYEAMRYNTVALVTPPSVVFAMRPLASANFLLSVLRILSADPRLTAGG
VVFHKFSNAGATLSPHLSRFFAAHGPHLLRPDDQIVVNTCKHAIAAVVFD
SAPCYMHVHAAAAALSRAFAVRPGLLFNLLFAVVALLSWLQRVFIVDLPV
VFWRDLTRASYLCPEQYIYSAADPLLDPDALHALIHLRKARGVDARVWRV
PDADHVLILRKHPEKYVDVIRALNHWGINAWRARNNAPLWQLPPLPPQQH
QQQHQSGLYKL*
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spliced messenger RNA

>Gchil5433.t1 ID=Gchil5433.t1|Name=Gchil5433.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00004418_pilon:1709452..1710387- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCCCGTCGAGCAGTATCACAAGAAGACAAACACCGGCCACCCCGT
GCGCATCCGCATCCCCGCCGCCGCCTCCGCCGCCGCCGCCGCCCCCACCG
CCGTCCTCGTCGGCTGGCTTGGCGCCTCCCTCAACAACCTCGCAAAGTAC
GCCGCCATCTACGAGGCCATGCGCTACAACACCGTCGCCCTCGTCACTCC
GCCCTCCGTCGTCTTCGCCATGCGCCCGCTCGCCAGCGCAAACTTCCTGC
TCTCCGTCCTGCGCATCCTCTCCGCCGACCCGCGCCTTACCGCCGGCGGT
GTCGTCTTCCACAAGTTCTCCAACGCCGGCGCCACCCTGTCCCCGCACCT
CTCCCGCTTCTTCGCCGCCCACGGCCCGCACCTGCTCCGCCCCGACGACC
AGATCGTCGTCAACACCTGCAAGCACGCCATCGCTGCCGTCGTCTTCGAC
TCTGCCCCGTGCTATATGCACGTCCACGCCGCAGCCGCCGCCCTTTCGCG
CGCCTTTGCCGTCCGCCCGGGCCTGCTCTTCAACCTGCTCTTCGCCGTCG
TCGCCCTGCTATCCTGGCTGCAGCGCGTCTTTATCGTCGACCTCCCGGTC
GTCTTCTGGCGCGACCTCACCCGCGCCTCCTATCTCTGTCCTGAGCAGTA
CATCTACTCCGCCGCCGACCCCTTGCTCGACCCTGACGCCCTGCACGCCC
TCATCCACCTCCGCAAGGCCCGCGGCGTCGACGCCCGCGTTTGGCGCGTC
CCCGACGCCGATCACGTCCTAATCCTCCGCAAGCACCCGGAGAAGTACGT
AGACGTCATTCGCGCCCTCAACCACTGGGGTATCAACGCCTGGCGCGCCC
GAAACAACGCCCCGCTCTGGCAACTGCCCCCCCTGCCTCCCCAACAACAC
CAACAACAACATCAATCGGGCCTCTACAAACTGTGA
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protein sequence of Gchil5433.t1

>Gchil5433.t1 ID=Gchil5433.t1|Name=Gchil5433.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=312bp
MHPVEQYHKKTNTGHPVRIRIPAAASAAAAAPTAVLVGWLGASLNNLAKY
AAIYEAMRYNTVALVTPPSVVFAMRPLASANFLLSVLRILSADPRLTAGG
VVFHKFSNAGATLSPHLSRFFAAHGPHLLRPDDQIVVNTCKHAIAAVVFD
SAPCYMHVHAAAAALSRAFAVRPGLLFNLLFAVVALLSWLQRVFIVDLPV
VFWRDLTRASYLCPEQYIYSAADPLLDPDALHALIHLRKARGVDARVWRV
PDADHVLILRKHPEKYVDVIRALNHWGINAWRARNNAPLWQLPPLPPQQH
QQQHQSGLYKL*
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mRNA from alignment at tig00004418_pilon:1709452..1710387-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5433.t1 ID=Gchil5433.t1|Name=Gchil5433.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00004418_pilon:1709452..1710387- (Gracilaria chilensis NLEC103_M9 male)
ATGCACCCCGTCGAGCAGTATCACAAGAAGACAAACACCGGCCACCCCGT
GCGCATCCGCATCCCCGCCGCCGCCTCCGCCGCCGCCGCCGCCCCCACCG
CCGTCCTCGTCGGCTGGCTTGGCGCCTCCCTCAACAACCTCGCAAAGTAC
GCCGCCATCTACGAGGCCATGCGCTACAACACCGTCGCCCTCGTCACTCC
GCCCTCCGTCGTCTTCGCCATGCGCCCGCTCGCCAGCGCAAACTTCCTGC
TCTCCGTCCTGCGCATCCTCTCCGCCGACCCGCGCCTTACCGCCGGCGGT
GTCGTCTTCCACAAGTTCTCCAACGCCGGCGCCACCCTGTCCCCGCACCT
CTCCCGCTTCTTCGCCGCCCACGGCCCGCACCTGCTCCGCCCCGACGACC
AGATCGTCGTCAACACCTGCAAGCACGCCATCGCTGCCGTCGTCTTCGAC
TCTGCCCCGTGCTATATGCACGTCCACGCCGCAGCCGCCGCCCTTTCGCG
CGCCTTTGCCGTCCGCCCGGGCCTGCTCTTCAACCTGCTCTTCGCCGTCG
TCGCCCTGCTATCCTGGCTGCAGCGCGTCTTTATCGTCGACCTCCCGGTC
GTCTTCTGGCGCGACCTCACCCGCGCCTCCTATCTCTGTCCTGAGCAGTA
CATCTACTCCGCCGCCGACCCCTTGCTCGACCCTGACGCCCTGCACGCCC
TCATCCACCTCCGCAAGGCCCGCGGCGTCGACGCCCGCGTTTGGCGCGTC
CCCGACGCCGATCACGTCCTAATCCTCCGCAAGCACCCGGAGAAGTACGT
AGACGTCATTCGCGCCCTCAACCACTGGGGTATCAACGCCTGGCGCGCCC
GAAACAACGCCCCGCTCTGGCAACTGCCCCCCCTGCCTCCCCAACAACAC
CAACAACAACATCAATCGGGCCTCTACAAACTGTGA
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Coding sequence (CDS) from alignment at tig00004418_pilon:1709452..1710387-

>Gchil5433.t1 ID=Gchil5433.t1|Name=Gchil5433.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=936bp|location=Sequence derived from alignment at tig00004418_pilon:1709452..1710387- (Gracilaria chilensis NLEC103_M9 male)
ATGCACCCCGTCGAGCAGTATCACAAGAAGACAAACACCGGCCACCCCGT
GCGCATCCGCATCCCCGCCGCCGCCTCCGCCGCCGCCGCCGCCCCCACCG
CCGTCCTCGTCGGCTGGCTTGGCGCCTCCCTCAACAACCTCGCAAAGTAC
GCCGCCATCTACGAGGCCATGCGCTACAACACCGTCGCCCTCGTCACTCC
GCCCTCCGTCGTCTTCGCCATGCGCCCGCTCGCCAGCGCAAACTTCCTGC
TCTCCGTCCTGCGCATCCTCTCCGCCGACCCGCGCCTTACCGCCGGCGGT
GTCGTCTTCCACAAGTTCTCCAACGCCGGCGCCACCCTGTCCCCGCACCT
CTCCCGCTTCTTCGCCGCCCACGGCCCGCACCTGCTCCGCCCCGACGACC
AGATCGTCGTCAACACCTGCAAGCACGCCATCGCTGCCGTCGTCTTCGAC
TCTGCCCCGTGCTATATGCACGTCCACGCCGCAGCCGCCGCCCTTTCGCG
CGCCTTTGCCGTCCGCCCGGGCCTGCTCTTCAACCTGCTCTTCGCCGTCG
TCGCCCTGCTATCCTGGCTGCAGCGCGTCTTTATCGTCGACCTCCCGGTC
GTCTTCTGGCGCGACCTCACCCGCGCCTCCTATCTCTGTCCTGAGCAGTA
CATCTACTCCGCCGCCGACCCCTTGCTCGACCCTGACGCCCTGCACGCCC
TCATCCACCTCCGCAAGGCCCGCGGCGTCGACGCCCGCGTTTGGCGCGTC
CCCGACGCCGATCACGTCCTAATCCTCCGCAAGCACCCGGAGAAGTACGT
AGACGTCATTCGCGCCCTCAACCACTGGGGTATCAACGCCTGGCGCGCCC
GAAACAACGCCCCGCTCTGGCAACTGCCCCCCCTGCCTCCCCAACAACAC
CAACAACAACATCAATCGGGCCTCTACAAACTGTGA
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