Gchil5462.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5462.t1
Unique NameGchil5462.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length110
Homology
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BLAST of Gchil5462.t1 vs. uniprot
Match: R7QJC9_CHOCR (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJC9_CHOCR)

HSP 1 Score: 82.0 bits (201), Expect = 4.680e-16
Identity = 52/111 (46.85%), Postives = 65/111 (58.56%), Query Frame = 0 
Query:    1 MIYRCDPLQLLELARRMLKLIFRRGDLIDTQNRSADCMLVLADGYIRRLATGPDDVER--QLQAVDANTVAEPKVTAAAPLNASSKCVPHSCTAYAISCDAFRSHLNRTPH 109
            M  R    +L  LA  M KL F RGD+I  Q+  AD +L+LADGY RRL  G D VER  + QA  A T++   VTA  P+ A++KCV  +C AYA+S   FR  L   PH
Sbjct:    1 MFSRVSASELRALAGHMHKLTFSRGDVIIAQSEGADRLLLLADGYARRLRRGRDGVERYVETQACGA-TLSALHVTAGDPIYATAKCVTQTCAAYAMSTHTFRQQLRERPH 110
The following BLAST results are available for this feature:
BLAST of Gchil5462.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7QJC9_CHOCR4.680e-1646.85Cyclic nucleotide-binding domain-containing protei... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10Jelly Rollscoord: 1..109
e-value: 1.4E-7
score: 33.1
IPR000595Cyclic nucleotide-binding domainPROSITEPS50042CNMP_BINDING_3coord: 1..109
score: 7.615
IPR018490Cyclic nucleotide-binding-likeSUPERFAMILY51206cAMP-binding domain-likecoord: 5..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1884796..1885125 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5462.t1Gchil5462.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 1884796..1885125 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5462.t1 ID=Gchil5462.t1|Name=Gchil5462.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=110bp
MIYRCDPLQLLELARRMLKLIFRRGDLIDTQNRSADCMLVLADGYIRRLA
TGPDDVERQLQAVDANTVAEPKVTAAAPLNASSKCVPHSCTAYAISCDAF
RSHLNRTPH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014710RmlC-like_jellyroll
IPR000595cNMP-bd_dom
IPR018490cNMP-bd-like