Gchil5340.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5340.t1
Unique Name	Gchil5340.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	710

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004418_pilon	contig	tig00004418_pilon:1151062..1153191 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S39_285V6.2
PFAMs	Tcf25
Max annot lvl	35493\|Streptophyta
Evalue	1.3e-49
EggNOG OGs	KOG2422@1\|root,KOG2422@2759\|Eukaryota,37M5E@33090\|Viridiplantae,3G8G6@35493\|Streptophyta
Description	transcription factor
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5340	Gchil5340	Gracilaria chilensis NLEC103_M9 male	gene	tig00004418_pilon 1151062..1153191 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5340.t1.start1	Gchil5340.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004418_pilon 1151062..1151064 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5340.t1.CDS1	Gchil5340.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004418_pilon 1151062..1153191 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5340.t1.exon1	Gchil5340.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004418_pilon 1151062..1153191 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5340.t1.stop1	Gchil5340.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004418_pilon 1153189..1153191 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5340.t1	Gchil5340.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004418_pilon 1151062..1153191 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004418_pilon:1151062..1153191+
coding sequence from alignment at tig00004418_pilon:1151062..1153191+

mRNA sequence

>Gchil5340.t1 ID=Gchil5340.t1|Name=Gchil5340.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=710bp
MSRRAIRRYDEALRAQKIHEEKENEGTDSDTAPESHHPISKPSPGFFSLL
QDSEDLADEDEDKDEDEPTAEYDVPIGEETTPNDPTDHIQEAENAPNISS
IENQKASLGESNQGLKKSKKKRKKGRGKKKRGNVLSREEDPDWIALNEAS
DLRPISSRKSPSDIPKSYFRKEDDDEIRKEASEIMKTVEKMALSDSDGIS
GQNFAVHEDNNPLRVEVKHLNASSELKKLFGSRAVEAERRNERNADAQVL
RRRRPPPPRAHLRKQLTLVTPRDTWFGYAPGLTMVIDKEPTNNSNLGLRY
FRYKHEPSYKSLQNEYRVVVENLDHNPLVQFVSMHPFHVDGLLQLAELYR
QMGEMDRAAEQIERSIYVLQTSWNVTFKPYDGMCRLRFDVIENRSLYLAL
FRYSQLLTRRGLHRTALEVSKLLLNFDPVNDPMGVLLLADSYALLSGEYG
WILGMNKFYKHVPLKYFPNFAASAAIAIESERQDSFQSSTLSTSRKGVSG
TQSKESETELESTTLRAEETLIDALLTYPMLLKPIVLAIRDDPGVWAEYT
LYDENWYSSGIENCDVLLRISRIYAERSKLLWNSVSHKEMLAKCARIAGE
LDRLAAVTANQTKESEPEAYRMLERVVACRALRKDAAEWFEKSGLYRTLQ
IGDFTDSSNLPGELLARDAAQQAIGAHPQRDITLTQGAIEFLQSMLPWRE
ARDAHPEAG*

spliced messenger RNA

>Gchil5340.t1 ID=Gchil5340.t1|Name=Gchil5340.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2130bp|location=Sequence derived from alignment at tig00004418_pilon:1151062..1153191+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGGAGAGCCATAAGAAGATACGACGAAGCTCTTCGTGCACAGAA
GATCCATGAAGAAAAAGAGAACGAGGGGACCGACTCTGATACAGCTCCAG
AATCACATCACCCTATTTCAAAACCGAGTCCCGGATTCTTTTCATTACTT
CAAGACTCTGAAGACTTAGCTGATGAGGACGAGGACAAGGACGAAGACGA
ACCTACAGCAGAATATGATGTCCCCATTGGGGAAGAAACAACTCCCAACG
ACCCCACGGATCATATTCAAGAAGCAGAAAACGCGCCGAACATATCTTCT
ATTGAAAACCAGAAAGCTTCATTAGGGGAAAGCAACCAAGGATTGAAAAA
GTCGAAAAAGAAAAGGAAGAAAGGTCGAGGAAAAAAGAAACGTGGAAATG
TGCTGTCTCGGGAGGAAGATCCGGACTGGATTGCATTGAACGAGGCGTCT
GACCTGAGACCAATTTCATCAAGGAAATCACCCAGTGACATCCCCAAATC
CTATTTCAGGAAAGAAGACGATGACGAGATACGGAAAGAAGCAAGTGAAA
TAATGAAGACTGTTGAGAAAATGGCGCTGTCTGATTCGGATGGCATTTCT
GGTCAAAACTTTGCCGTACATGAAGATAACAACCCGCTTCGGGTAGAAGT
GAAGCATCTTAATGCTTCGTCAGAACTCAAGAAGCTCTTTGGATCAAGGG
CAGTTGAAGCTGAGCGTCGAAACGAGCGAAATGCAGACGCACAAGTCCTT
CGCCGTCGGAGACCTCCTCCTCCAAGAGCTCATCTTCGTAAGCAGCTCAC
TCTGGTGACACCCCGAGACACATGGTTCGGGTACGCACCTGGGTTGACGA
TGGTTATTGACAAGGAACCCACGAATAACAGTAACCTCGGTCTGCGATAT
TTCCGCTACAAGCATGAACCATCGTATAAGAGTTTACAAAACGAATATCG
GGTCGTAGTCGAAAATCTTGATCATAATCCGCTTGTGCAGTTCGTGAGTA
TGCATCCTTTCCATGTCGATGGATTATTGCAGCTTGCAGAGCTTTACCGT
CAGATGGGAGAGATGGACCGCGCTGCTGAGCAAATAGAGCGAAGTATATA
TGTGCTTCAGACGTCATGGAATGTGACATTTAAGCCATACGATGGAATGT
GCAGACTCAGATTTGACGTCATTGAGAATCGGTCGCTCTATCTTGCGTTA
TTCCGTTACTCCCAGCTTCTGACGAGAAGAGGGTTACACCGCACTGCACT
CGAAGTAAGCAAACTGCTGTTGAACTTCGATCCCGTTAACGACCCCATGG
GCGTGCTCTTGTTAGCCGACTCCTATGCTCTGCTATCGGGAGAGTACGGA
TGGATATTGGGGATGAACAAGTTCTACAAACACGTTCCCTTGAAATACTT
TCCCAACTTCGCTGCAAGTGCCGCGATTGCTATAGAAAGTGAACGACAAG
ATTCTTTCCAATCTTCGACCCTATCAACATCACGTAAAGGTGTATCAGGG
ACCCAGAGCAAAGAATCTGAGACCGAATTGGAAAGCACTACACTCAGAGC
TGAAGAGACTTTGATCGATGCTCTTCTAACTTATCCGATGCTTTTAAAGC
CCATTGTCTTGGCAATAAGAGATGACCCTGGGGTGTGGGCGGAGTATACT
CTCTACGATGAAAATTGGTACAGCTCGGGAATCGAAAACTGTGATGTCCT
GCTCCGCATAAGTCGAATCTATGCAGAGAGAAGCAAACTGTTGTGGAATT
CTGTATCCCACAAGGAGATGCTTGCTAAGTGTGCAAGAATTGCGGGCGAA
CTAGACAGATTAGCAGCTGTCACAGCTAACCAAACCAAAGAAAGCGAGCC
GGAGGCTTACCGGATGTTGGAGCGAGTAGTGGCATGTCGAGCTTTGCGCA
AAGACGCAGCAGAATGGTTTGAGAAGAGCGGGCTCTATCGTACCTTACAG
ATAGGTGACTTCACCGATAGTAGTAACTTACCTGGCGAGCTTCTTGCGAG
GGATGCCGCTCAGCAAGCGATCGGTGCCCATCCCCAGCGGGATATCACCC
TGACACAAGGAGCCATAGAGTTTCTGCAGAGCATGTTGCCATGGAGAGAA
GCACGAGACGCGCATCCAGAAGCAGGCTGA

protein sequence of Gchil5340.t1

>Gchil5340.t1 ID=Gchil5340.t1|Name=Gchil5340.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=710bp
MSRRAIRRYDEALRAQKIHEEKENEGTDSDTAPESHHPISKPSPGFFSLL
QDSEDLADEDEDKDEDEPTAEYDVPIGEETTPNDPTDHIQEAENAPNISS
IENQKASLGESNQGLKKSKKKRKKGRGKKKRGNVLSREEDPDWIALNEAS
DLRPISSRKSPSDIPKSYFRKEDDDEIRKEASEIMKTVEKMALSDSDGIS
GQNFAVHEDNNPLRVEVKHLNASSELKKLFGSRAVEAERRNERNADAQVL
RRRRPPPPRAHLRKQLTLVTPRDTWFGYAPGLTMVIDKEPTNNSNLGLRY
FRYKHEPSYKSLQNEYRVVVENLDHNPLVQFVSMHPFHVDGLLQLAELYR
QMGEMDRAAEQIERSIYVLQTSWNVTFKPYDGMCRLRFDVIENRSLYLAL
FRYSQLLTRRGLHRTALEVSKLLLNFDPVNDPMGVLLLADSYALLSGEYG
WILGMNKFYKHVPLKYFPNFAASAAIAIESERQDSFQSSTLSTSRKGVSG
TQSKESETELESTTLRAEETLIDALLTYPMLLKPIVLAIRDDPGVWAEYT
LYDENWYSSGIENCDVLLRISRIYAERSKLLWNSVSHKEMLAKCARIAGE
LDRLAAVTANQTKESEPEAYRMLERVVACRALRKDAAEWFEKSGLYRTLQ
IGDFTDSSNLPGELLARDAAQQAIGAHPQRDITLTQGAIEFLQSMLPWRE
ARDAHPEAG*

mRNA from alignment at tig00004418_pilon:1151062..1153191+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5340.t1 ID=Gchil5340.t1|Name=Gchil5340.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2130bp|location=Sequence derived from alignment at tig00004418_pilon:1151062..1153191+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCAGGAGAGCCATAAGAAGATACGACGAAGCTCTTCGTGCACAGAA
GATCCATGAAGAAAAAGAGAACGAGGGGACCGACTCTGATACAGCTCCAG
AATCACATCACCCTATTTCAAAACCGAGTCCCGGATTCTTTTCATTACTT
CAAGACTCTGAAGACTTAGCTGATGAGGACGAGGACAAGGACGAAGACGA
ACCTACAGCAGAATATGATGTCCCCATTGGGGAAGAAACAACTCCCAACG
ACCCCACGGATCATATTCAAGAAGCAGAAAACGCGCCGAACATATCTTCT
ATTGAAAACCAGAAAGCTTCATTAGGGGAAAGCAACCAAGGATTGAAAAA
GTCGAAAAAGAAAAGGAAGAAAGGTCGAGGAAAAAAGAAACGTGGAAATG
TGCTGTCTCGGGAGGAAGATCCGGACTGGATTGCATTGAACGAGGCGTCT
GACCTGAGACCAATTTCATCAAGGAAATCACCCAGTGACATCCCCAAATC
CTATTTCAGGAAAGAAGACGATGACGAGATACGGAAAGAAGCAAGTGAAA
TAATGAAGACTGTTGAGAAAATGGCGCTGTCTGATTCGGATGGCATTTCT
GGTCAAAACTTTGCCGTACATGAAGATAACAACCCGCTTCGGGTAGAAGT
GAAGCATCTTAATGCTTCGTCAGAACTCAAGAAGCTCTTTGGATCAAGGG
CAGTTGAAGCTGAGCGTCGAAACGAGCGAAATGCAGACGCACAAGTCCTT
CGCCGTCGGAGACCTCCTCCTCCAAGAGCTCATCTTCGTAAGCAGCTCAC
TCTGGTGACACCCCGAGACACATGGTTCGGGTACGCACCTGGGTTGACGA
TGGTTATTGACAAGGAACCCACGAATAACAGTAACCTCGGTCTGCGATAT
TTCCGCTACAAGCATGAACCATCGTATAAGAGTTTACAAAACGAATATCG
GGTCGTAGTCGAAAATCTTGATCATAATCCGCTTGTGCAGTTCGTGAGTA
TGCATCCTTTCCATGTCGATGGATTATTGCAGCTTGCAGAGCTTTACCGT
CAGATGGGAGAGATGGACCGCGCTGCTGAGCAAATAGAGCGAAGTATATA
TGTGCTTCAGACGTCATGGAATGTGACATTTAAGCCATACGATGGAATGT
GCAGACTCAGATTTGACGTCATTGAGAATCGGTCGCTCTATCTTGCGTTA
TTCCGTTACTCCCAGCTTCTGACGAGAAGAGGGTTACACCGCACTGCACT
CGAAGTAAGCAAACTGCTGTTGAACTTCGATCCCGTTAACGACCCCATGG
GCGTGCTCTTGTTAGCCGACTCCTATGCTCTGCTATCGGGAGAGTACGGA
TGGATATTGGGGATGAACAAGTTCTACAAACACGTTCCCTTGAAATACTT
TCCCAACTTCGCTGCAAGTGCCGCGATTGCTATAGAAAGTGAACGACAAG
ATTCTTTCCAATCTTCGACCCTATCAACATCACGTAAAGGTGTATCAGGG
ACCCAGAGCAAAGAATCTGAGACCGAATTGGAAAGCACTACACTCAGAGC
TGAAGAGACTTTGATCGATGCTCTTCTAACTTATCCGATGCTTTTAAAGC
CCATTGTCTTGGCAATAAGAGATGACCCTGGGGTGTGGGCGGAGTATACT
CTCTACGATGAAAATTGGTACAGCTCGGGAATCGAAAACTGTGATGTCCT
GCTCCGCATAAGTCGAATCTATGCAGAGAGAAGCAAACTGTTGTGGAATT
CTGTATCCCACAAGGAGATGCTTGCTAAGTGTGCAAGAATTGCGGGCGAA
CTAGACAGATTAGCAGCTGTCACAGCTAACCAAACCAAAGAAAGCGAGCC
GGAGGCTTACCGGATGTTGGAGCGAGTAGTGGCATGTCGAGCTTTGCGCA
AAGACGCAGCAGAATGGTTTGAGAAGAGCGGGCTCTATCGTACCTTACAG
ATAGGTGACTTCACCGATAGTAGTAACTTACCTGGCGAGCTTCTTGCGAG
GGATGCCGCTCAGCAAGCGATCGGTGCCCATCCCCAGCGGGATATCACCC
TGACACAAGGAGCCATAGAGTTTCTGCAGAGCATGTTGCCATGGAGAGAA
GCACGAGACGCGCATCCAGAAGCAGGCTGA

Coding sequence (CDS) from alignment at tig00004418_pilon:1151062..1153191+

>Gchil5340.t1 ID=Gchil5340.t1|Name=Gchil5340.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2130bp|location=Sequence derived from alignment at tig00004418_pilon:1151062..1153191+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCAGGAGAGCCATAAGAAGATACGACGAAGCTCTTCGTGCACAGAA
GATCCATGAAGAAAAAGAGAACGAGGGGACCGACTCTGATACAGCTCCAG
AATCACATCACCCTATTTCAAAACCGAGTCCCGGATTCTTTTCATTACTT
CAAGACTCTGAAGACTTAGCTGATGAGGACGAGGACAAGGACGAAGACGA
ACCTACAGCAGAATATGATGTCCCCATTGGGGAAGAAACAACTCCCAACG
ACCCCACGGATCATATTCAAGAAGCAGAAAACGCGCCGAACATATCTTCT
ATTGAAAACCAGAAAGCTTCATTAGGGGAAAGCAACCAAGGATTGAAAAA
GTCGAAAAAGAAAAGGAAGAAAGGTCGAGGAAAAAAGAAACGTGGAAATG
TGCTGTCTCGGGAGGAAGATCCGGACTGGATTGCATTGAACGAGGCGTCT
GACCTGAGACCAATTTCATCAAGGAAATCACCCAGTGACATCCCCAAATC
CTATTTCAGGAAAGAAGACGATGACGAGATACGGAAAGAAGCAAGTGAAA
TAATGAAGACTGTTGAGAAAATGGCGCTGTCTGATTCGGATGGCATTTCT
GGTCAAAACTTTGCCGTACATGAAGATAACAACCCGCTTCGGGTAGAAGT
GAAGCATCTTAATGCTTCGTCAGAACTCAAGAAGCTCTTTGGATCAAGGG
CAGTTGAAGCTGAGCGTCGAAACGAGCGAAATGCAGACGCACAAGTCCTT
CGCCGTCGGAGACCTCCTCCTCCAAGAGCTCATCTTCGTAAGCAGCTCAC
TCTGGTGACACCCCGAGACACATGGTTCGGGTACGCACCTGGGTTGACGA
TGGTTATTGACAAGGAACCCACGAATAACAGTAACCTCGGTCTGCGATAT
TTCCGCTACAAGCATGAACCATCGTATAAGAGTTTACAAAACGAATATCG
GGTCGTAGTCGAAAATCTTGATCATAATCCGCTTGTGCAGTTCGTGAGTA
TGCATCCTTTCCATGTCGATGGATTATTGCAGCTTGCAGAGCTTTACCGT
CAGATGGGAGAGATGGACCGCGCTGCTGAGCAAATAGAGCGAAGTATATA
TGTGCTTCAGACGTCATGGAATGTGACATTTAAGCCATACGATGGAATGT
GCAGACTCAGATTTGACGTCATTGAGAATCGGTCGCTCTATCTTGCGTTA
TTCCGTTACTCCCAGCTTCTGACGAGAAGAGGGTTACACCGCACTGCACT
CGAAGTAAGCAAACTGCTGTTGAACTTCGATCCCGTTAACGACCCCATGG
GCGTGCTCTTGTTAGCCGACTCCTATGCTCTGCTATCGGGAGAGTACGGA
TGGATATTGGGGATGAACAAGTTCTACAAACACGTTCCCTTGAAATACTT
TCCCAACTTCGCTGCAAGTGCCGCGATTGCTATAGAAAGTGAACGACAAG
ATTCTTTCCAATCTTCGACCCTATCAACATCACGTAAAGGTGTATCAGGG
ACCCAGAGCAAAGAATCTGAGACCGAATTGGAAAGCACTACACTCAGAGC
TGAAGAGACTTTGATCGATGCTCTTCTAACTTATCCGATGCTTTTAAAGC
CCATTGTCTTGGCAATAAGAGATGACCCTGGGGTGTGGGCGGAGTATACT
CTCTACGATGAAAATTGGTACAGCTCGGGAATCGAAAACTGTGATGTCCT
GCTCCGCATAAGTCGAATCTATGCAGAGAGAAGCAAACTGTTGTGGAATT
CTGTATCCCACAAGGAGATGCTTGCTAAGTGTGCAAGAATTGCGGGCGAA
CTAGACAGATTAGCAGCTGTCACAGCTAACCAAACCAAAGAAAGCGAGCC
GGAGGCTTACCGGATGTTGGAGCGAGTAGTGGCATGTCGAGCTTTGCGCA
AAGACGCAGCAGAATGGTTTGAGAAGAGCGGGCTCTATCGTACCTTACAG
ATAGGTGACTTCACCGATAGTAGTAACTTACCTGGCGAGCTTCTTGCGAG
GGATGCCGCTCAGCAAGCGATCGGTGCCCATCCCCAGCGGGATATCACCC
TGACACAAGGAGCCATAGAGTTTCTGCAGAGCATGTTGCCATGGAGAGAA
GCACGAGACGCGCATCCAGAAGCAGGCTGA