Gchil5718.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5718.t1
Unique Name	Gchil5718.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	612

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000015_pilon	contig	tig00000015_pilon:1110468..1112303 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3847.GLYMA12G13220.1
PFAMs	zf-RING_2
Max annot lvl	35493\|Streptophyta
GOs	GO:0000003,GO:0000209,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005623,GO:0005975,GO:0005976,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009664,GO:0009791,GO:0009827,GO:0009845,GO:0009987,GO:0010154,GO:0010191,GO:0010393,GO:0010498,GO:0012505,GO:0016043,GO:0016567,GO:0016740,GO:0017144,GO:0019538,GO:0019787,GO:0019941,GO:0022414,GO:0030163,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0036211,GO:0042545,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044464,GO:0045229,GO:0045488,GO:0048316,GO:0048363,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0051603,GO:0061458,GO:0061630,GO:0061659,GO:0070647,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0080001,GO:0090351,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue	1.37e-115
EggNOG OGs	COG5540@1\|root,KOG0828@2759\|Eukaryota,37I5S@33090\|Viridiplantae,3GBCE@35493\|Streptophyta,4JD2B@91835\|fabids
Description	Transmembrane E3 ubiquitin-protein ligase 1-like
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5718	Gchil5718	Gracilaria chilensis NLEC103_M9 male	gene	tig00000015_pilon 1110468..1112303 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5718.t1.stop1	Gchil5718.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000015_pilon 1110468..1110470 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5718.t1.CDS1	Gchil5718.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000015_pilon 1110468..1112303 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5718.t1.exon1	Gchil5718.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000015_pilon 1110468..1112303 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5718.t1.start1	Gchil5718.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000015_pilon 1112301..1112303 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5718.t1	Gchil5718.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000015_pilon 1110468..1112303 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000015_pilon:1110468..1112303-
coding sequence from alignment at tig00000015_pilon:1110468..1112303-

mRNA sequence

>Gchil5718.t1 ID=Gchil5718.t1|Name=Gchil5718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=612bp
MARQSRVARVALAWWLPLSVALAAAIDTDTAAPPVAPLHALPARALFAPD
DAADVPPVPHAFPRNLRRLYDGSWNAPSAALLFPNASFHNVAGFALLTAE
NHPTALSPVTNLVLADLLLRDGAYRTPRDLSLNMYGLYDQTSGTVVLVGD
VLYDDVPATLNRLFAAYQATPHVVPLNVSEHRFVAALSPPIQKLRKNYRA
QRALPRPSVAAQCPFHATFSLTEGHFTDVTPTDSGSHPFNPDGPAVLSGR
QLDPNDEYVEMGGLFVSKPCNTTISLVLSTLDTDTLFGKAINYTLLVTVV
AFIQVIVLIRQMEMTSTQAGARRVSLMTVGLQAVADSYLCLGHLTMGIAV
QPLFNAFATAAFFKFICFSIFLMRWMLLIWKARRPSGFSEGWEAMRRELS
MLYSRFYGSLLIGIILLYQLQNHLRFFLFALYSFWVPQIILNAVEDHRRP
LLPSYIIGSTITRLAIPLYFWGCPRNFLHIQPRPASAIALVVWLFTQAII
LLSQYKFGPRWFIPKELLPEKYDYYRPIVVHDEIEDLEAPAPTANGESRP
LVSSPPAESLRECCICMEAVPVNSRDRMVTPCEHFFHSDCLEKWLEIRLE
CALCRTPVPPP*

spliced messenger RNA

>Gchil5718.t1 ID=Gchil5718.t1|Name=Gchil5718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1836bp|location=Sequence derived from alignment at tig00000015_pilon:1110468..1112303- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGTCAGTCGCGCGTCGCCCGCGTCGCGCTTGCGTGGTGGTTGCC
GCTGAGTGTCGCTCTCGCCGCCGCCATCGACACCGACACGGCCGCTCCGC
CCGTTGCCCCCCTCCACGCCCTTCCCGCTCGCGCTCTCTTCGCCCCCGAC
GACGCCGCTGACGTCCCCCCCGTCCCCCACGCCTTCCCCAGGAACCTGCG
CCGTTTGTATGACGGTTCGTGGAACGCGCCCTCCGCCGCGCTGCTCTTCC
CCAACGCCTCGTTTCATAATGTGGCCGGCTTCGCCTTGCTCACCGCCGAG
AACCATCCCACCGCTCTCTCCCCTGTTACAAACCTCGTTCTCGCAGACCT
TTTGCTTCGCGACGGCGCCTATCGCACCCCCCGCGACCTCTCACTCAACA
TGTACGGCCTGTATGACCAGACCTCCGGCACCGTCGTACTGGTGGGCGAC
GTGCTCTATGACGATGTCCCCGCCACCCTCAACCGTCTTTTCGCCGCTTA
TCAGGCAACCCCCCACGTTGTTCCGCTCAACGTCTCCGAGCACCGCTTTG
TGGCCGCTCTCTCCCCTCCCATTCAGAAGCTACGCAAGAATTATCGCGCA
CAGCGCGCATTGCCGCGCCCTTCCGTCGCTGCCCAGTGCCCGTTTCATGC
CACCTTCTCGCTCACCGAAGGGCACTTCACCGATGTCACTCCCACCGACT
CCGGTTCGCATCCCTTCAACCCGGACGGCCCGGCCGTCCTGTCAGGCCGC
CAATTGGACCCCAACGACGAGTACGTTGAGATGGGTGGCCTCTTCGTCTC
CAAGCCCTGTAACACAACCATCTCCCTCGTCCTGTCCACCCTCGACACCG
ACACGCTCTTCGGAAAGGCCATTAATTACACCTTGCTCGTCACCGTCGTC
GCCTTCATTCAGGTCATTGTGCTTATTCGCCAGATGGAGATGACCAGCAC
CCAGGCCGGAGCCAGACGCGTCTCGCTCATGACCGTCGGTTTGCAGGCCG
TCGCTGATTCCTACTTATGTTTGGGACATCTCACCATGGGCATTGCTGTT
CAGCCGTTGTTTAATGCCTTTGCCACCGCCGCTTTCTTTAAGTTTATCTG
CTTTTCTATCTTCCTCATGCGCTGGATGCTTCTTATATGGAAGGCTCGTC
GACCCTCGGGCTTTTCGGAGGGCTGGGAAGCTATGCGTCGCGAGTTGTCC
ATGTTGTACTCTCGCTTTTATGGCTCCTTGCTCATTGGAATTATTCTCTT
GTATCAGCTTCAAAACCATTTGCGCTTCTTCTTATTTGCTTTGTACTCTT
TTTGGGTGCCGCAGATCATCCTGAATGCCGTCGAAGATCATCGTCGTCCG
CTTCTTCCTTCGTACATTATTGGCTCTACTATCACCCGTCTCGCCATTCC
GCTTTACTTTTGGGGCTGCCCACGTAACTTTTTGCACATTCAGCCGCGAC
CGGCCTCGGCTATCGCCCTCGTCGTCTGGCTCTTTACGCAGGCTATCATT
CTTCTTTCGCAGTACAAGTTTGGTCCGCGATGGTTCATTCCCAAAGAGTT
GCTTCCGGAAAAGTACGATTACTACCGCCCCATCGTCGTGCACGACGAAA
TCGAAGATCTTGAGGCCCCCGCCCCAACTGCCAACGGGGAAAGTCGTCCA
CTCGTGTCCAGCCCACCTGCAGAATCTCTTCGCGAGTGCTGTATATGTAT
GGAAGCGGTCCCCGTTAACTCGAGAGATCGAATGGTCACCCCGTGCGAAC
ATTTCTTTCACAGCGATTGTCTGGAAAAATGGCTCGAGATTAGACTAGAA
TGTGCCTTGTGTAGAACGCCGGTTCCTCCGCCTTGA

protein sequence of Gchil5718.t1

>Gchil5718.t1 ID=Gchil5718.t1|Name=Gchil5718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=612bp
MARQSRVARVALAWWLPLSVALAAAIDTDTAAPPVAPLHALPARALFAPD
DAADVPPVPHAFPRNLRRLYDGSWNAPSAALLFPNASFHNVAGFALLTAE
NHPTALSPVTNLVLADLLLRDGAYRTPRDLSLNMYGLYDQTSGTVVLVGD
VLYDDVPATLNRLFAAYQATPHVVPLNVSEHRFVAALSPPIQKLRKNYRA
QRALPRPSVAAQCPFHATFSLTEGHFTDVTPTDSGSHPFNPDGPAVLSGR
QLDPNDEYVEMGGLFVSKPCNTTISLVLSTLDTDTLFGKAINYTLLVTVV
AFIQVIVLIRQMEMTSTQAGARRVSLMTVGLQAVADSYLCLGHLTMGIAV
QPLFNAFATAAFFKFICFSIFLMRWMLLIWKARRPSGFSEGWEAMRRELS
MLYSRFYGSLLIGIILLYQLQNHLRFFLFALYSFWVPQIILNAVEDHRRP
LLPSYIIGSTITRLAIPLYFWGCPRNFLHIQPRPASAIALVVWLFTQAII
LLSQYKFGPRWFIPKELLPEKYDYYRPIVVHDEIEDLEAPAPTANGESRP
LVSSPPAESLRECCICMEAVPVNSRDRMVTPCEHFFHSDCLEKWLEIRLE
CALCRTPVPPP*

mRNA from alignment at tig00000015_pilon:1110468..1112303-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5718.t1 ID=Gchil5718.t1|Name=Gchil5718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1836bp|location=Sequence derived from alignment at tig00000015_pilon:1110468..1112303- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCGTCAGTCGCGCGTCGCCCGCGTCGCGCTTGCGTGGTGGTTGCC
GCTGAGTGTCGCTCTCGCCGCCGCCATCGACACCGACACGGCCGCTCCGC
CCGTTGCCCCCCTCCACGCCCTTCCCGCTCGCGCTCTCTTCGCCCCCGAC
GACGCCGCTGACGTCCCCCCCGTCCCCCACGCCTTCCCCAGGAACCTGCG
CCGTTTGTATGACGGTTCGTGGAACGCGCCCTCCGCCGCGCTGCTCTTCC
CCAACGCCTCGTTTCATAATGTGGCCGGCTTCGCCTTGCTCACCGCCGAG
AACCATCCCACCGCTCTCTCCCCTGTTACAAACCTCGTTCTCGCAGACCT
TTTGCTTCGCGACGGCGCCTATCGCACCCCCCGCGACCTCTCACTCAACA
TGTACGGCCTGTATGACCAGACCTCCGGCACCGTCGTACTGGTGGGCGAC
GTGCTCTATGACGATGTCCCCGCCACCCTCAACCGTCTTTTCGCCGCTTA
TCAGGCAACCCCCCACGTTGTTCCGCTCAACGTCTCCGAGCACCGCTTTG
TGGCCGCTCTCTCCCCTCCCATTCAGAAGCTACGCAAGAATTATCGCGCA
CAGCGCGCATTGCCGCGCCCTTCCGTCGCTGCCCAGTGCCCGTTTCATGC
CACCTTCTCGCTCACCGAAGGGCACTTCACCGATGTCACTCCCACCGACT
CCGGTTCGCATCCCTTCAACCCGGACGGCCCGGCCGTCCTGTCAGGCCGC
CAATTGGACCCCAACGACGAGTACGTTGAGATGGGTGGCCTCTTCGTCTC
CAAGCCCTGTAACACAACCATCTCCCTCGTCCTGTCCACCCTCGACACCG
ACACGCTCTTCGGAAAGGCCATTAATTACACCTTGCTCGTCACCGTCGTC
GCCTTCATTCAGGTCATTGTGCTTATTCGCCAGATGGAGATGACCAGCAC
CCAGGCCGGAGCCAGACGCGTCTCGCTCATGACCGTCGGTTTGCAGGCCG
TCGCTGATTCCTACTTATGTTTGGGACATCTCACCATGGGCATTGCTGTT
CAGCCGTTGTTTAATGCCTTTGCCACCGCCGCTTTCTTTAAGTTTATCTG
CTTTTCTATCTTCCTCATGCGCTGGATGCTTCTTATATGGAAGGCTCGTC
GACCCTCGGGCTTTTCGGAGGGCTGGGAAGCTATGCGTCGCGAGTTGTCC
ATGTTGTACTCTCGCTTTTATGGCTCCTTGCTCATTGGAATTATTCTCTT
GTATCAGCTTCAAAACCATTTGCGCTTCTTCTTATTTGCTTTGTACTCTT
TTTGGGTGCCGCAGATCATCCTGAATGCCGTCGAAGATCATCGTCGTCCG
CTTCTTCCTTCGTACATTATTGGCTCTACTATCACCCGTCTCGCCATTCC
GCTTTACTTTTGGGGCTGCCCACGTAACTTTTTGCACATTCAGCCGCGAC
CGGCCTCGGCTATCGCCCTCGTCGTCTGGCTCTTTACGCAGGCTATCATT
CTTCTTTCGCAGTACAAGTTTGGTCCGCGATGGTTCATTCCCAAAGAGTT
GCTTCCGGAAAAGTACGATTACTACCGCCCCATCGTCGTGCACGACGAAA
TCGAAGATCTTGAGGCCCCCGCCCCAACTGCCAACGGGGAAAGTCGTCCA
CTCGTGTCCAGCCCACCTGCAGAATCTCTTCGCGAGTGCTGTATATGTAT
GGAAGCGGTCCCCGTTAACTCGAGAGATCGAATGGTCACCCCGTGCGAAC
ATTTCTTTCACAGCGATTGTCTGGAAAAATGGCTCGAGATTAGACTAGAA
TGTGCCTTGTGTAGAACGCCGGTTCCTCCGCCTTGA

Coding sequence (CDS) from alignment at tig00000015_pilon:1110468..1112303-

>Gchil5718.t1 ID=Gchil5718.t1|Name=Gchil5718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1836bp|location=Sequence derived from alignment at tig00000015_pilon:1110468..1112303- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCGTCAGTCGCGCGTCGCCCGCGTCGCGCTTGCGTGGTGGTTGCC
GCTGAGTGTCGCTCTCGCCGCCGCCATCGACACCGACACGGCCGCTCCGC
CCGTTGCCCCCCTCCACGCCCTTCCCGCTCGCGCTCTCTTCGCCCCCGAC
GACGCCGCTGACGTCCCCCCCGTCCCCCACGCCTTCCCCAGGAACCTGCG
CCGTTTGTATGACGGTTCGTGGAACGCGCCCTCCGCCGCGCTGCTCTTCC
CCAACGCCTCGTTTCATAATGTGGCCGGCTTCGCCTTGCTCACCGCCGAG
AACCATCCCACCGCTCTCTCCCCTGTTACAAACCTCGTTCTCGCAGACCT
TTTGCTTCGCGACGGCGCCTATCGCACCCCCCGCGACCTCTCACTCAACA
TGTACGGCCTGTATGACCAGACCTCCGGCACCGTCGTACTGGTGGGCGAC
GTGCTCTATGACGATGTCCCCGCCACCCTCAACCGTCTTTTCGCCGCTTA
TCAGGCAACCCCCCACGTTGTTCCGCTCAACGTCTCCGAGCACCGCTTTG
TGGCCGCTCTCTCCCCTCCCATTCAGAAGCTACGCAAGAATTATCGCGCA
CAGCGCGCATTGCCGCGCCCTTCCGTCGCTGCCCAGTGCCCGTTTCATGC
CACCTTCTCGCTCACCGAAGGGCACTTCACCGATGTCACTCCCACCGACT
CCGGTTCGCATCCCTTCAACCCGGACGGCCCGGCCGTCCTGTCAGGCCGC
CAATTGGACCCCAACGACGAGTACGTTGAGATGGGTGGCCTCTTCGTCTC
CAAGCCCTGTAACACAACCATCTCCCTCGTCCTGTCCACCCTCGACACCG
ACACGCTCTTCGGAAAGGCCATTAATTACACCTTGCTCGTCACCGTCGTC
GCCTTCATTCAGGTCATTGTGCTTATTCGCCAGATGGAGATGACCAGCAC
CCAGGCCGGAGCCAGACGCGTCTCGCTCATGACCGTCGGTTTGCAGGCCG
TCGCTGATTCCTACTTATGTTTGGGACATCTCACCATGGGCATTGCTGTT
CAGCCGTTGTTTAATGCCTTTGCCACCGCCGCTTTCTTTAAGTTTATCTG
CTTTTCTATCTTCCTCATGCGCTGGATGCTTCTTATATGGAAGGCTCGTC
GACCCTCGGGCTTTTCGGAGGGCTGGGAAGCTATGCGTCGCGAGTTGTCC
ATGTTGTACTCTCGCTTTTATGGCTCCTTGCTCATTGGAATTATTCTCTT
GTATCAGCTTCAAAACCATTTGCGCTTCTTCTTATTTGCTTTGTACTCTT
TTTGGGTGCCGCAGATCATCCTGAATGCCGTCGAAGATCATCGTCGTCCG
CTTCTTCCTTCGTACATTATTGGCTCTACTATCACCCGTCTCGCCATTCC
GCTTTACTTTTGGGGCTGCCCACGTAACTTTTTGCACATTCAGCCGCGAC
CGGCCTCGGCTATCGCCCTCGTCGTCTGGCTCTTTACGCAGGCTATCATT
CTTCTTTCGCAGTACAAGTTTGGTCCGCGATGGTTCATTCCCAAAGAGTT
GCTTCCGGAAAAGTACGATTACTACCGCCCCATCGTCGTGCACGACGAAA
TCGAAGATCTTGAGGCCCCCGCCCCAACTGCCAACGGGGAAAGTCGTCCA
CTCGTGTCCAGCCCACCTGCAGAATCTCTTCGCGAGTGCTGTATATGTAT
GGAAGCGGTCCCCGTTAACTCGAGAGATCGAATGGTCACCCCGTGCGAAC
ATTTCTTTCACAGCGATTGTCTGGAAAAATGGCTCGAGATTAGACTAGAA
TGTGCCTTGTGTAGAACGCCGGTTCCTCCGCCTTGA