Gchil5479.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5479.t1
Unique NameGchil5479.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length143
Homology
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BLAST of Gchil5479.t1 vs. uniprot
Match: A0A7S0BF02_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BF02_9RHOD)

HSP 1 Score: 72.8 bits (177), Expect = 6.610e-14
Identity = 41/86 (47.67%), Postives = 55/86 (63.95%), Query Frame = 0 
Query:   44 LPDDVLQSIFERLSH-ARDVAAVRSVCCSWRNLVDNSTFIWRSIVFELP-RCPSSAQYAELWYRKAAEYGNAQAQFLLALLYTYGY 127
            LP ++   I E L++    +  VR VC  W+++VD S  IW++I  +LP R P+ A   E WYRKAAE+GN  A  LLALLY+YGY
Sbjct:   10 LPTELEVKILELLANDLSSIMTVRRVCKRWKDIVDCSRVIWKTIPLQLPTRFPAQA---EKWYRKAAEFGNQDAYVLLALLYSYGY 92
The following BLAST results are available for this feature:
BLAST of Gchil5479.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S0BF02_9RHOD6.610e-1447.67Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 44..85
e-value: 4.6E-8
score: 42.8
IPR001810F-box domainPFAMPF12937F-box-likecoord: 42..88
e-value: 2.6E-11
score: 43.2
IPR001810F-box domainPROSITEPS50181FBOXcoord: 38..86
score: 10.10684
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 89..135
e-value: 3.7E-7
score: 32.1
NoneNo IPR availableGENE3D1.20.1280.50coord: 35..86
e-value: 7.8E-9
score: 37.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..142
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 98..130
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 31..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2034776..2035293 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5479.t1Gchil5479.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 2034776..2035293 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5479.t1 ID=Gchil5479.t1|Name=Gchil5479.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=143bp
MRGLSLPPLLMPPPTRVLPPPSPPSPPSSASSASSASSASPAHLPDDVLQ
SIFERLSHARDVAAVRSVCCSWRNLVDNSTFIWRSIVFELPRCPSSAQYA
ELWYRKAAEYGNAQAQFLLALLYTYGYGRPSQPVLPPRPFAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR011990TPR-like_helical_dom_sf
IPR036047F-box-like_dom_sf