Gchil6805.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6805.t1
Unique Name	Gchil6805.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	518

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004416_pilon	contig	tig00004416_pilon:1240798..1242351 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705795.1
Preferred name	TAPT1
PFAMs	DUF747
Max annot lvl	2759\|Eukaryota
GOs	GO:0001501,GO:0001503,GO:0001701,GO:0003674,GO:0004888,GO:0004930,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006457,GO:0007154,GO:0007165,GO:0007186,GO:0007275,GO:0008150,GO:0009790,GO:0009791,GO:0009792,GO:0009888,GO:0009987,GO:0010638,GO:0012505,GO:0014031,GO:0014032,GO:0014033,GO:0015630,GO:0016020,GO:0016021,GO:0016520,GO:0023052,GO:0030154,GO:0030176,GO:0031224,GO:0031227,GO:0031344,GO:0031346,GO:0031984,GO:0032501,GO:0032502,GO:0033043,GO:0034975,GO:0036064,GO:0038023,GO:0042175,GO:0042995,GO:0043009,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045724,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048706,GO:0048731,GO:0048762,GO:0048856,GO:0048863,GO:0048864,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051716,GO:0060089,GO:0060485,GO:0060491,GO:0061035,GO:0061036,GO:0065007,GO:0071944,GO:0098827,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0120038,GO:1902017,GO:1902115,GO:1902117,GO:1903010,GO:1903012,GO:1904888,GO:2000026
Evalue	1.14e-79
EggNOG OGs	KOG2490@1\|root,KOG2490@2759\|Eukaryota
Description	positive regulation of bone development
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6805	Gchil6805	Gracilaria chilensis NLEC103_M9 male	gene	tig00004416_pilon 1240798..1242351 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6805.t1.start1	Gchil6805.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004416_pilon 1240798..1240800 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6805.t1.CDS1	Gchil6805.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004416_pilon 1240798..1242351 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6805.t1.exon1	Gchil6805.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004416_pilon 1240798..1242351 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6805.t1.stop1	Gchil6805.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004416_pilon 1242349..1242351 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6805.t1	Gchil6805.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004416_pilon 1240798..1242351 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004416_pilon:1240798..1242351+
coding sequence from alignment at tig00004416_pilon:1240798..1242351+

mRNA sequence

>Gchil6805.t1 ID=Gchil6805.t1|Name=Gchil6805.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=518bp
MTSVASQESSTHLETTNSPKAPNQKPHLLSNIDQIHRRHKIPRSHTTGSS
LHNSLSLAPPSPSTSRMSSSTNPAVFLARHLLGIDQGPTPDALEDAWSVA
TKRRGVYNLFQVPTRLERLLTLGQLICLDEFLMLFTYLPLRAFISFFRLI
IPYSGSSIRTASRAPWYRTCCISWAADVLQLSLLLITALILRSFDISWIY
HNIRGQSVIKLYVVFNVIEIFDRLCSSFGIDVLDSLGWTTSSAVQFFTRD
HKDASSGAIRARAVQGIVLLSRMAFDYICALVYIIIHATLLLTWVVTLNV
AINTQNNALLTLLVSNNFVELKGAVFKSFKVQNLFQIACSDAVERFQLCV
FLAVMLVVTNADEKLFMTFIVILVCEITVDWIKHAFVTKFNRISPNVYRQ
FFTVICEDLSKSKSQSVVRSIGGGGVAKRTGFVNLPLAALVTRMSAGSFL
RLPRIGMLLIWMSLVATKTAISISLIGHSWRHIRESRSRSDEESDKDSDW
VQKLMQVERYDLISRNS*

spliced messenger RNA

>Gchil6805.t1 ID=Gchil6805.t1|Name=Gchil6805.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00004416_pilon:1240798..1242351+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCAGTGGCAAGTCAAGAATCAAGTACTCATCTTGAGACAACAAA
TTCGCCAAAGGCACCGAATCAAAAGCCACATTTGTTATCGAACATAGACC
AGATTCATCGTCGCCACAAGATTCCTCGAAGTCACACCACAGGATCATCC
CTTCATAATTCTCTATCATTAGCTCCTCCATCACCTTCTACAAGCCGTAT
GTCATCAAGTACGAACCCTGCTGTTTTCCTCGCCAGACATCTGCTTGGCA
TCGATCAAGGGCCCACTCCGGATGCCCTGGAAGATGCTTGGAGCGTTGCG
ACCAAGCGTCGAGGAGTATATAACCTCTTCCAGGTCCCTACTCGTTTAGA
ACGTCTCTTGACGCTTGGGCAATTAATTTGCTTAGATGAGTTTCTTATGT
TGTTCACTTATTTACCTCTCAGGGCGTTTATCTCCTTCTTCCGTCTCATC
ATTCCGTACTCTGGCAGCTCGATTCGTACCGCCTCTCGCGCACCTTGGTA
CCGCACATGTTGCATATCCTGGGCTGCAGACGTCCTACAACTCAGTCTCT
TACTAATCACTGCATTAATTTTACGTTCCTTTGATATCAGCTGGATATAC
CACAATATACGCGGACAGTCAGTAATCAAACTTTATGTTGTGTTTAACGT
AATTGAGATTTTTGACCGGCTTTGTTCCTCATTCGGAATTGATGTACTTG
ACAGCCTTGGTTGGACAACTTCCTCGGCGGTGCAATTCTTCACGAGAGAT
CACAAGGACGCCAGCTCTGGTGCCATTCGCGCACGCGCAGTGCAAGGTAT
TGTGCTTCTGAGTAGAATGGCGTTCGATTACATATGTGCTCTGGTGTACA
TAATAATACATGCTACACTACTTCTAACGTGGGTTGTGACGCTGAATGTA
GCTATCAACACCCAAAATAATGCACTGCTAACGTTGCTGGTCTCCAATAA
CTTTGTAGAGCTCAAAGGGGCTGTATTCaaaagcttcaaggttcagaatc
tttttcagattgcttgcTCGGATGCCGTTGAAAGATTTCAATTGTGCGTC
TTCCTCGCAGTGATGTTGGTTGTGACAAACGCAGATGAGAAACTGTTCAT
GACATTTATTGTCATTTTGGTCTGTGAGATTACTGTGGATTGGATAAAAC
ATGCTTTCGTGACAAAGTTCAATCGTATATCACCAAACGTTTATAGACAA
TTTTTCACTGTCATTTGTGAGGACTTATCCAAATCCAAGTCCCAGTCGGT
GGTCCGAAGCATAGGAGGTGGCGGAGTTGCCAAGAGGACTGGGTTTGTTA
ATCTCCCTCTAGCTGCTCTCGTTACCCGAATGAGTGCAGGTTCGTTTCTT
CGTCTACCACGGATCGGTATGCTTCTCATTTGGATGAGTCTAGTTGCAAC
TAAAACAGCCATAAGCATTTCATTAATAGGTCACTCTTGGCGCCACATTC
GTGAGTCACGGAGCAGATCCGATGAAGAATCGGATAAAGACAGCGATTGG
GTGCAGAAATTGATGCAAGTGGAAAGATACGATCTAATATCAAGGAACTC
TTGA

protein sequence of Gchil6805.t1

>Gchil6805.t1 ID=Gchil6805.t1|Name=Gchil6805.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=518bp
MTSVASQESSTHLETTNSPKAPNQKPHLLSNIDQIHRRHKIPRSHTTGSS
LHNSLSLAPPSPSTSRMSSSTNPAVFLARHLLGIDQGPTPDALEDAWSVA
TKRRGVYNLFQVPTRLERLLTLGQLICLDEFLMLFTYLPLRAFISFFRLI
IPYSGSSIRTASRAPWYRTCCISWAADVLQLSLLLITALILRSFDISWIY
HNIRGQSVIKLYVVFNVIEIFDRLCSSFGIDVLDSLGWTTSSAVQFFTRD
HKDASSGAIRARAVQGIVLLSRMAFDYICALVYIIIHATLLLTWVVTLNV
AINTQNNALLTLLVSNNFVELKGAVFKSFKVQNLFQIACSDAVERFQLCV
FLAVMLVVTNADEKLFMTFIVILVCEITVDWIKHAFVTKFNRISPNVYRQ
FFTVICEDLSKSKSQSVVRSIGGGGVAKRTGFVNLPLAALVTRMSAGSFL
RLPRIGMLLIWMSLVATKTAISISLIGHSWRHIRESRSRSDEESDKDSDW
VQKLMQVERYDLISRNS*

mRNA from alignment at tig00004416_pilon:1240798..1242351+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6805.t1 ID=Gchil6805.t1|Name=Gchil6805.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00004416_pilon:1240798..1242351+ (Gracilaria chilensis NLEC103_M9 male)
ATGACATCAGTGGCAAGTCAAGAATCAAGTACTCATCTTGAGACAACAAA
TTCGCCAAAGGCACCGAATCAAAAGCCACATTTGTTATCGAACATAGACC
AGATTCATCGTCGCCACAAGATTCCTCGAAGTCACACCACAGGATCATCC
CTTCATAATTCTCTATCATTAGCTCCTCCATCACCTTCTACAAGCCGTAT
GTCATCAAGTACGAACCCTGCTGTTTTCCTCGCCAGACATCTGCTTGGCA
TCGATCAAGGGCCCACTCCGGATGCCCTGGAAGATGCTTGGAGCGTTGCG
ACCAAGCGTCGAGGAGTATATAACCTCTTCCAGGTCCCTACTCGTTTAGA
ACGTCTCTTGACGCTTGGGCAATTAATTTGCTTAGATGAGTTTCTTATGT
TGTTCACTTATTTACCTCTCAGGGCGTTTATCTCCTTCTTCCGTCTCATC
ATTCCGTACTCTGGCAGCTCGATTCGTACCGCCTCTCGCGCACCTTGGTA
CCGCACATGTTGCATATCCTGGGCTGCAGACGTCCTACAACTCAGTCTCT
TACTAATCACTGCATTAATTTTACGTTCCTTTGATATCAGCTGGATATAC
CACAATATACGCGGACAGTCAGTAATCAAACTTTATGTTGTGTTTAACGT
AATTGAGATTTTTGACCGGCTTTGTTCCTCATTCGGAATTGATGTACTTG
ACAGCCTTGGTTGGACAACTTCCTCGGCGGTGCAATTCTTCACGAGAGAT
CACAAGGACGCCAGCTCTGGTGCCATTCGCGCACGCGCAGTGCAAGGTAT
TGTGCTTCTGAGTAGAATGGCGTTCGATTACATATGTGCTCTGGTGTACA
TAATAATACATGCTACACTACTTCTAACGTGGGTTGTGACGCTGAATGTA
GCTATCAACACCCAAAATAATGCACTGCTAACGTTGCTGGTCTCCAATAA
CTTTGTAGAGCTCAAAGGGGCTGTATTCaaaagcttcaaggttcagaatc
tttttcagattgcttgcTCGGATGCCGTTGAAAGATTTCAATTGTGCGTC
TTCCTCGCAGTGATGTTGGTTGTGACAAACGCAGATGAGAAACTGTTCAT
GACATTTATTGTCATTTTGGTCTGTGAGATTACTGTGGATTGGATAAAAC
ATGCTTTCGTGACAAAGTTCAATCGTATATCACCAAACGTTTATAGACAA
TTTTTCACTGTCATTTGTGAGGACTTATCCAAATCCAAGTCCCAGTCGGT
GGTCCGAAGCATAGGAGGTGGCGGAGTTGCCAAGAGGACTGGGTTTGTTA
ATCTCCCTCTAGCTGCTCTCGTTACCCGAATGAGTGCAGGTTCGTTTCTT
CGTCTACCACGGATCGGTATGCTTCTCATTTGGATGAGTCTAGTTGCAAC
TAAAACAGCCATAAGCATTTCATTAATAGGTCACTCTTGGCGCCACATTC
GTGAGTCACGGAGCAGATCCGATGAAGAATCGGATAAAGACAGCGATTGG
GTGCAGAAATTGATGCAAGTGGAAAGATACGATCTAATATCAAGGAACTC
TTGA

Coding sequence (CDS) from alignment at tig00004416_pilon:1240798..1242351+

>Gchil6805.t1 ID=Gchil6805.t1|Name=Gchil6805.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1554bp|location=Sequence derived from alignment at tig00004416_pilon:1240798..1242351+ (Gracilaria chilensis NLEC103_M9 male)
ATGACATCAGTGGCAAGTCAAGAATCAAGTACTCATCTTGAGACAACAAA
TTCGCCAAAGGCACCGAATCAAAAGCCACATTTGTTATCGAACATAGACC
AGATTCATCGTCGCCACAAGATTCCTCGAAGTCACACCACAGGATCATCC
CTTCATAATTCTCTATCATTAGCTCCTCCATCACCTTCTACAAGCCGTAT
GTCATCAAGTACGAACCCTGCTGTTTTCCTCGCCAGACATCTGCTTGGCA
TCGATCAAGGGCCCACTCCGGATGCCCTGGAAGATGCTTGGAGCGTTGCG
ACCAAGCGTCGAGGAGTATATAACCTCTTCCAGGTCCCTACTCGTTTAGA
ACGTCTCTTGACGCTTGGGCAATTAATTTGCTTAGATGAGTTTCTTATGT
TGTTCACTTATTTACCTCTCAGGGCGTTTATCTCCTTCTTCCGTCTCATC
ATTCCGTACTCTGGCAGCTCGATTCGTACCGCCTCTCGCGCACCTTGGTA
CCGCACATGTTGCATATCCTGGGCTGCAGACGTCCTACAACTCAGTCTCT
TACTAATCACTGCATTAATTTTACGTTCCTTTGATATCAGCTGGATATAC
CACAATATACGCGGACAGTCAGTAATCAAACTTTATGTTGTGTTTAACGT
AATTGAGATTTTTGACCGGCTTTGTTCCTCATTCGGAATTGATGTACTTG
ACAGCCTTGGTTGGACAACTTCCTCGGCGGTGCAATTCTTCACGAGAGAT
CACAAGGACGCCAGCTCTGGTGCCATTCGCGCACGCGCAGTGCAAGGTAT
TGTGCTTCTGAGTAGAATGGCGTTCGATTACATATGTGCTCTGGTGTACA
TAATAATACATGCTACACTACTTCTAACGTGGGTTGTGACGCTGAATGTA
GCTATCAACACCCAAAATAATGCACTGCTAACGTTGCTGGTCTCCAATAA
CTTTGTAGAGCTCAAAGGGGCTGTATTCaaaagcttcaaggttcagaatc
tttttcagattgcttgcTCGGATGCCGTTGAAAGATTTCAATTGTGCGTC
TTCCTCGCAGTGATGTTGGTTGTGACAAACGCAGATGAGAAACTGTTCAT
GACATTTATTGTCATTTTGGTCTGTGAGATTACTGTGGATTGGATAAAAC
ATGCTTTCGTGACAAAGTTCAATCGTATATCACCAAACGTTTATAGACAA
TTTTTCACTGTCATTTGTGAGGACTTATCCAAATCCAAGTCCCAGTCGGT
GGTCCGAAGCATAGGAGGTGGCGGAGTTGCCAAGAGGACTGGGTTTGTTA
ATCTCCCTCTAGCTGCTCTCGTTACCCGAATGAGTGCAGGTTCGTTTCTT
CGTCTACCACGGATCGGTATGCTTCTCATTTGGATGAGTCTAGTTGCAAC
TAAAACAGCCATAAGCATTTCATTAATAGGTCACTCTTGGCGCCACATTC
GTGAGTCACGGAGCAGATCCGATGAAGAATCGGATAAAGACAGCGATTGG
GTGCAGAAATTGATGCAAGTGGAAAGATACGATCTAATATCAAGGAACTC
TTGA