Gchil6767.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6767.t1
Unique NameGchil6767.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length69
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:962707..963078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6767Gchil6767Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 962707..963078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6767.t1Gchil6767.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 962707..963078 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6767.t1.stop1Gchil6767.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 962707..962709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6767.t1.CDS1Gchil6767.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 962707..962853 -
Gchil6767.t1.CDS2Gchil6767.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 962929..962981 -
Gchil6767.t1.CDS3Gchil6767.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 963072..963078 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6767.t1.exon1Gchil6767.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 962707..962853 -
Gchil6767.t1.exon2Gchil6767.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 962929..962981 -
Gchil6767.t1.exon3Gchil6767.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 963072..963078 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6767.t1.intron1Gchil6767.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 962854..962928 -
Gchil6767.t1.intron2Gchil6767.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 962982..963071 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6767.t1.start1Gchil6767.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 963076..963078 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6767.t1 ID=Gchil6767.t1|Name=Gchil6767.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=69bp
MIHDDRSSVVKLKHRNILKKKYCVYVMMQAAAELVQICVVYKETRHRHYC
QSNASVTYRSYRTELTSL*
back to top

spliced messenger RNA

>Gchil6767.t1 ID=Gchil6767.t1|Name=Gchil6767.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=207bp|location=Sequence derived from alignment at tig00004416_pilon:962707..963078- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCACGACGATCGAAGTTCAGTTGTCAAACTGAAACACCGAAACAT
ACTGAAAAAAAAGTATTGCGTTTACGTCATGATGCAAGCTGCAGCGGAAC
TTGTACAGATATGCGTTGTATACAAAGAAACCCGTCACCGTCATTACTGT
CAGTCGAATGCTTCCGTTACGTACCGCTCATATCGCACCGAACTTACTAG
TTTATAG
back to top

protein sequence of Gchil6767.t1

>Gchil6767.t1 ID=Gchil6767.t1|Name=Gchil6767.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=69bp
MIHDDRSSVVKLKHRNILKKKYCVYVMMQAAAELVQICVVYKETRHRHYC
QSNASVTYRSYRTELTSL*
back to top

mRNA from alignment at tig00004416_pilon:962707..963078-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6767.t1 ID=Gchil6767.t1|Name=Gchil6767.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=372bp|location=Sequence derived from alignment at tig00004416_pilon:962707..963078- (Gracilaria chilensis NLEC103_M9 male)
ATGATTCGTATATGGCGATGTAGCGTAAGCAATCAGGGTCAACGGGGCAG
TTGGATGTTTGGTGCGTCGCAGACGTAGCTGCACGCCTCTCACATAGACG
ACGATCGAAGTTCAGTTGTCAAACTGAAACACCGAAACATACTGAAAAAA
GTAAGCCTTTCAATTCACTCAGCCAAATAATGACTGATCGGTACGAAGGG
TAGAGGTTAACCCTTTTCTCTGAAGAAGTATTGCGTTTACGTCATGATGC
AAGCTGCAGCGGAACTTGTACAGATATGCGTTGTATACAAAGAAACCCGT
CACCGTCATTACTGTCAGTCGAATGCTTCCGTTACGTACCGCTCATATCG
CACCGAACTTACTAGTTTATAG
back to top

Coding sequence (CDS) from alignment at tig00004416_pilon:962707..963078-

>Gchil6767.t1 ID=Gchil6767.t1|Name=Gchil6767.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=207bp|location=Sequence derived from alignment at tig00004416_pilon:962707..963078- (Gracilaria chilensis NLEC103_M9 male)
ATGATTCACGACGATCGAAGTTCAGTTGTCAAACTGAAACACCGAAACAT
ACTGAAAAAAAAGTATTGCGTTTACGTCATGATGCAAGCTGCAGCGGAAC
TTGTACAGATATGCGTTGTATACAAAGAAACCCGTCACCGTCATTACTGT
CAGTCGAATGCTTCCGTTACGTACCGCTCATATCGCACCGAACTTACTAG
TTTATAG
back to top