Gchil6726.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6726.t1
Unique NameGchil6726.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length410
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:607305..608534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog208960.XP_007265334.1
Preferred nameLTV1
PFAMsLTV
Max annot lvl4751|Fungi
KEGG koko:K05012,ko:K14798
KEGG TC2.A.49.1.1,2.A.49.1.2,2.A.49.1.3,2.A.49.2.2,2.A.49.2.3,2.A.49.2.8
GOsGO:0000054,GO:0000056,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0006913,GO:0006950,GO:0006970,GO:0006979,GO:0008104,GO:0008150,GO:0009628,GO:0009987,GO:0010008,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0022613,GO:0030684,GO:0030688,GO:0031090,GO:0031410,GO:0031503,GO:0031902,GO:0031982,GO:0032991,GO:0033036,GO:0033554,GO:0033750,GO:0034448,GO:0034599,GO:0034613,GO:0042221,GO:0042254,GO:0042274,GO:0042493,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046618,GO:0046907,GO:0050657,GO:0050658,GO:0050896,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051503,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0070727,GO:0070887,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1901264,GO:1904669,GO:1990904
Evalue3.27e-11
EggNOG OGsKOG2637@1|root,KOG2637@2759|Eukaryota,38FAZ@33154|Opisthokonta,3P01A@4751|Fungi,3UY31@5204|Basidiomycota,2282V@155619|Agaricomycetes,3H1BB@355688|Agaricomycetes incertae sedis
DescriptionLow temperature viability protein
COG categoryS
BRITEko00000,ko03009,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6726Gchil6726Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 607305..608534 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6726.t1.stop1Gchil6726.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 607305..607307 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6726.t1.CDS1Gchil6726.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 607305..608534 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6726.t1.exon1Gchil6726.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 607305..608534 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6726.t1.start1Gchil6726.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 608532..608534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6726.t1Gchil6726.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 607305..608534 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6726.t1 ID=Gchil6726.t1|Name=Gchil6726.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=410bp
MEEIKRDRKHHPDLDEVIAFLDSDGELDSTASDPLDLGPDAVEGTFFADS
NSDTQSGLLEDDFIALANAPSEGENQHEADDDALWKNIREPYRKLRDLDE
QFEKFMNGFQMDSTDEEYDEIEEELIEQANKQRNDGHPFDFEQFEEKRES
DLIDGMATLNCDGVVNKTEQKYHKLQPQNAASGAERPDEREKEFEQYAAA
EFDSGIEHLLGSYARATPNETFEAFDGLDKAREALRKAELEEQEFIAKLN
SLDVEGVENDPDLDVHFDEMYKEEEKWDCETILSTYTNLENHPSVIDAPS
RYPRSSTQRAPIIRLDPRIQAPLELSHAERPVTSAPAVDYGTRRSVAGVS
RRTRGESKDEKKARKAAAKEISRERRALKSELKKAFGVEQTKQGRHATAI
GKAKVAVKF*
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spliced messenger RNA

>Gchil6726.t1 ID=Gchil6726.t1|Name=Gchil6726.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00004416_pilon:607305..608534- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGAAATTAAGCGCGATAGAAAGCACCACCCGGATCTGGATGAAGT
CATCGCATTTCTTGATTCCGATGGCGAACTTGATTCAACTGCGTCAGACC
CCCTCGACCTTGGGCCTGATGCAGTGGAAGGTACGTTTTTCGCTGATTCA
AACTCCGACACACAGTCTGGCCTGCTAGAAGATGATTTCATAGCGCTAGC
GAATGCGCCTTCCGAAGGAGAAAACCAACATGAAGCCGACGACGATGCCT
TATGGAAAAACATTCGCGAGCCATACCGAAAACTTCGAGATCTTGACGAA
CAATTTGAGAAGTTCATGAACGGGTTTCAAATGGATTCCACTGATGAAGA
ATACGACGAAATTGAGGAAGAACTGATAGAGCAAGCAAACAAGCAGAGAA
ACGATGGACACCCCTTCGATTTTGAACAATTTGAAGAGAAACGGGAAAGT
GATCTTATAGACGGAATGGCTACCCTTAATTGCGATGGTGTTGTGAATAA
AACCGAGCAAAAATATCACAAACTACAACCTCAGAATGCAGCATCTGGAG
CTGAACGGCCGGACGAGAGGGAGAAAGAGTTTGAGCAATATGCCGCCGCA
GAGTTTGACAGTGGAATAGAACATTTGCTTGGTTCCTATGCTCGTGCCAC
CCCGAATGAGACGTTCGAAGCTTTTGATGGGTTGGACAAAGCCAGAGAAG
CACTTCGAAAAGCAGAGCTTGAGGAACAAGAATTCATAGCGAAACTCAAC
AGTCTGGATGTCGAAGGCGTCGAAAACGATCCAGACCTAGATGTTCATTT
TGACGAGATGTACAAAGAAGAAGAGAAATGGGACTGCGAGACGATTTTAT
CCACTTACACTAACTTGGAGAACCATCCAAGCGTCATAGACGCCCCTAGT
CGTTACCCTAGGAGCTCAACACAGCGGGCACCGATAATCCGACTAGATCC
GCGAATTCAAGCTCCTTTGGAACTCAGCCATGCTGAGCGGCCTGTGACGT
CTGCTCCCGCTGTAGATTATGGCACAAGGCGCTCTGTTGCAGGTGTCTCA
AGGCGCACTCGAGGGGAAAGCAAAGACGAGAAAAAAGCGCGAAAAGCTGC
GGCAAAGGAGATCTCTAGAGAAAGACGCGCTTTAAAGAGCGAGTTAAAGA
AGGCATTCGGTGTGGAACAGACGAAACAGGGGCGACACGCCACTGCCATA
GGAAAAGCCAAGGTTGCGGTAAAGTTTTAG
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protein sequence of Gchil6726.t1

>Gchil6726.t1 ID=Gchil6726.t1|Name=Gchil6726.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=410bp
MEEIKRDRKHHPDLDEVIAFLDSDGELDSTASDPLDLGPDAVEGTFFADS
NSDTQSGLLEDDFIALANAPSEGENQHEADDDALWKNIREPYRKLRDLDE
QFEKFMNGFQMDSTDEEYDEIEEELIEQANKQRNDGHPFDFEQFEEKRES
DLIDGMATLNCDGVVNKTEQKYHKLQPQNAASGAERPDEREKEFEQYAAA
EFDSGIEHLLGSYARATPNETFEAFDGLDKAREALRKAELEEQEFIAKLN
SLDVEGVENDPDLDVHFDEMYKEEEKWDCETILSTYTNLENHPSVIDAPS
RYPRSSTQRAPIIRLDPRIQAPLELSHAERPVTSAPAVDYGTRRSVAGVS
RRTRGESKDEKKARKAAAKEISRERRALKSELKKAFGVEQTKQGRHATAI
GKAKVAVKF*
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mRNA from alignment at tig00004416_pilon:607305..608534-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6726.t1 ID=Gchil6726.t1|Name=Gchil6726.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00004416_pilon:607305..608534- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGAAATTAAGCGCGATAGAAAGCACCACCCGGATCTGGATGAAGT
CATCGCATTTCTTGATTCCGATGGCGAACTTGATTCAACTGCGTCAGACC
CCCTCGACCTTGGGCCTGATGCAGTGGAAGGTACGTTTTTCGCTGATTCA
AACTCCGACACACAGTCTGGCCTGCTAGAAGATGATTTCATAGCGCTAGC
GAATGCGCCTTCCGAAGGAGAAAACCAACATGAAGCCGACGACGATGCCT
TATGGAAAAACATTCGCGAGCCATACCGAAAACTTCGAGATCTTGACGAA
CAATTTGAGAAGTTCATGAACGGGTTTCAAATGGATTCCACTGATGAAGA
ATACGACGAAATTGAGGAAGAACTGATAGAGCAAGCAAACAAGCAGAGAA
ACGATGGACACCCCTTCGATTTTGAACAATTTGAAGAGAAACGGGAAAGT
GATCTTATAGACGGAATGGCTACCCTTAATTGCGATGGTGTTGTGAATAA
AACCGAGCAAAAATATCACAAACTACAACCTCAGAATGCAGCATCTGGAG
CTGAACGGCCGGACGAGAGGGAGAAAGAGTTTGAGCAATATGCCGCCGCA
GAGTTTGACAGTGGAATAGAACATTTGCTTGGTTCCTATGCTCGTGCCAC
CCCGAATGAGACGTTCGAAGCTTTTGATGGGTTGGACAAAGCCAGAGAAG
CACTTCGAAAAGCAGAGCTTGAGGAACAAGAATTCATAGCGAAACTCAAC
AGTCTGGATGTCGAAGGCGTCGAAAACGATCCAGACCTAGATGTTCATTT
TGACGAGATGTACAAAGAAGAAGAGAAATGGGACTGCGAGACGATTTTAT
CCACTTACACTAACTTGGAGAACCATCCAAGCGTCATAGACGCCCCTAGT
CGTTACCCTAGGAGCTCAACACAGCGGGCACCGATAATCCGACTAGATCC
GCGAATTCAAGCTCCTTTGGAACTCAGCCATGCTGAGCGGCCTGTGACGT
CTGCTCCCGCTGTAGATTATGGCACAAGGCGCTCTGTTGCAGGTGTCTCA
AGGCGCACTCGAGGGGAAAGCAAAGACGAGAAAAAAGCGCGAAAAGCTGC
GGCAAAGGAGATCTCTAGAGAAAGACGCGCTTTAAAGAGCGAGTTAAAGA
AGGCATTCGGTGTGGAACAGACGAAACAGGGGCGACACGCCACTGCCATA
GGAAAAGCCAAGGTTGCGGTAAAGTTTTAG
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Coding sequence (CDS) from alignment at tig00004416_pilon:607305..608534-

>Gchil6726.t1 ID=Gchil6726.t1|Name=Gchil6726.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1230bp|location=Sequence derived from alignment at tig00004416_pilon:607305..608534- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGAAATTAAGCGCGATAGAAAGCACCACCCGGATCTGGATGAAGT
CATCGCATTTCTTGATTCCGATGGCGAACTTGATTCAACTGCGTCAGACC
CCCTCGACCTTGGGCCTGATGCAGTGGAAGGTACGTTTTTCGCTGATTCA
AACTCCGACACACAGTCTGGCCTGCTAGAAGATGATTTCATAGCGCTAGC
GAATGCGCCTTCCGAAGGAGAAAACCAACATGAAGCCGACGACGATGCCT
TATGGAAAAACATTCGCGAGCCATACCGAAAACTTCGAGATCTTGACGAA
CAATTTGAGAAGTTCATGAACGGGTTTCAAATGGATTCCACTGATGAAGA
ATACGACGAAATTGAGGAAGAACTGATAGAGCAAGCAAACAAGCAGAGAA
ACGATGGACACCCCTTCGATTTTGAACAATTTGAAGAGAAACGGGAAAGT
GATCTTATAGACGGAATGGCTACCCTTAATTGCGATGGTGTTGTGAATAA
AACCGAGCAAAAATATCACAAACTACAACCTCAGAATGCAGCATCTGGAG
CTGAACGGCCGGACGAGAGGGAGAAAGAGTTTGAGCAATATGCCGCCGCA
GAGTTTGACAGTGGAATAGAACATTTGCTTGGTTCCTATGCTCGTGCCAC
CCCGAATGAGACGTTCGAAGCTTTTGATGGGTTGGACAAAGCCAGAGAAG
CACTTCGAAAAGCAGAGCTTGAGGAACAAGAATTCATAGCGAAACTCAAC
AGTCTGGATGTCGAAGGCGTCGAAAACGATCCAGACCTAGATGTTCATTT
TGACGAGATGTACAAAGAAGAAGAGAAATGGGACTGCGAGACGATTTTAT
CCACTTACACTAACTTGGAGAACCATCCAAGCGTCATAGACGCCCCTAGT
CGTTACCCTAGGAGCTCAACACAGCGGGCACCGATAATCCGACTAGATCC
GCGAATTCAAGCTCCTTTGGAACTCAGCCATGCTGAGCGGCCTGTGACGT
CTGCTCCCGCTGTAGATTATGGCACAAGGCGCTCTGTTGCAGGTGTCTCA
AGGCGCACTCGAGGGGAAAGCAAAGACGAGAAAAAAGCGCGAAAAGCTGC
GGCAAAGGAGATCTCTAGAGAAAGACGCGCTTTAAAGAGCGAGTTAAAGA
AGGCATTCGGTGTGGAACAGACGAAACAGGGGCGACACGCCACTGCCATA
GGAAAAGCCAAGGTTGCGGTAAAGTTTTAG
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