Gchil6739.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6739.t1
Unique NameGchil6739.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length340
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:702686..704143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702689.1
Preferred nameSLC25A42
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15084,ko:K15085
KEGG TC2.A.29.12.1,2.A.29.12.2
GOsGO:0000295,GO:0003674,GO:0003824,GO:0005215,GO:0005346,GO:0005347,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006839,GO:0006855,GO:0006862,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0009987,GO:0015075,GO:0015101,GO:0015215,GO:0015216,GO:0015217,GO:0015228,GO:0015238,GO:0015291,GO:0015297,GO:0015605,GO:0015695,GO:0015711,GO:0015748,GO:0015865,GO:0015866,GO:0015867,GO:0015868,GO:0015880,GO:0015893,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017110,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0034220,GO:0035349,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043262,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0050896,GO:0051179,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0051503,GO:0055085,GO:0061024,GO:0071077,GO:0071106,GO:0071702,GO:0071705,GO:0071840,GO:0072530,GO:0080121,GO:0080122,GO:0098573,GO:0098655,GO:0098656,GO:1901264,GO:1901505,GO:1901679,GO:1990542
Evalue1.01e-82
EggNOG OGsKOG0752@1|root,KOG0752@2759|Eukaryota
Descriptionmitochondrial transport
COG categoryU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6739Gchil6739Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 702686..704143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6739.t1Gchil6739.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 702686..704143 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6739.t1.stop1Gchil6739.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 702686..702688 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6739.t1.CDS1Gchil6739.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 702686..702910 -
Gchil6739.t1.CDS2Gchil6739.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 703059..703147 -
Gchil6739.t1.CDS3Gchil6739.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 703246..703820 -
Gchil6739.t1.CDS4Gchil6739.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 704013..704143 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6739.t1.exon1Gchil6739.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 702686..702910 -
Gchil6739.t1.exon2Gchil6739.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 703059..703147 -
Gchil6739.t1.exon3Gchil6739.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 703246..703820 -
Gchil6739.t1.exon4Gchil6739.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 704013..704143 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6739.t1.intron1Gchil6739.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 702911..703058 -
Gchil6739.t1.intron2Gchil6739.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 703148..703245 -
Gchil6739.t1.intron3Gchil6739.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 703821..704012 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6739.t1.start1Gchil6739.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 704141..704143 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6739.t1 ID=Gchil6739.t1|Name=Gchil6739.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=340bp
MELSKTAKGAVDESPTVPYASLKSFFAGAVSGAVAKTAVAPLDRTKILMQ
ISQMYGWQDYRGSVWSSMRTIWRTEGFFGFFRGNSATIARIMPYAAIQYS
SFEFYHRTLSNYVFQSDSPNSLKRFMAGAMAGSTSVLCTYPFDLARTVLA
VRTAHASPSRSGTNPGIARTLHSIVREEGITGVYRGMYPTLAGVIPYAGT
SFLTYGVLRRAADRRGVSDAHPITTSLVCGGTAGLVAQCCTYPFDLVRRR
LQALHKPELMTEPERAFITAASKHTRFGNISIVRAVLFIINTEGIRGLYR
GIQVNFLKTAPAMSISFTCYDRLRSALGVPPGKYSATRG*
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spliced messenger RNA

>Gchil6739.t1 ID=Gchil6739.t1|Name=Gchil6739.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00004416_pilon:702686..704143- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCTCTCGAAAACAGCAAAGGGTGCTGTCGATGAATCACCAACAGT
TCCGTATGCCTCTCTAAAGTCGTTCTTTGCTGGCGCAGTTTCTGGAGCAG
TAGCGAAAACAGCGGTTGCTCCACTCGACAGAACAAAGATCCTCATGCAA
ATCTCCCAAATGTATGGTTGGCAGGACTACCGCGGTTCAGTATGGAGCTC
CATGAGAACCATTTGGCGAACAGAAGGGTTCTTCGGGTTCTTTCGCGGCA
ACTCTGCCACGATTGCTCGTATCATGCCCTATGCTGCTATTCAGTATTCT
TCCTTCGAATTCTATCACCGAACTCTATCAAACTACGTCTTTCAGTCTGA
CTCTCCTAACTCTTTAAAGCGATTCATGGCCGGTGCAATGGCTGGCTCAA
CTAGTGTGCTATGTACATACCCTTTTGACCTGGCACGAACAGTTTTGGCG
GTCCGAACCGCACACGCATCTCCGAGTCGGTCAGGAACAAATCCTGGGAT
TGCAAGAACGCTTCATTCCATAGTGCGTGAAGAAGGAATCACTGGTGTCT
ACCGTGGCATGTACCCTACTTTGGCTGGAGTAATTCCGTATGCCGGGACA
AGTTTTCTTACGTATGGCGTTTTGAGAAGGGCTGCAGATCGTCGTGGCGT
TTCCGATGCGCACCCGATAACCACATCTCTAGTATGTGGCGGAACAGCCG
GTCTCGTTGCCCAATGTTGTACATATCCTTTTGACTTGGTGCGACGAAGA
CTTCAGGCGCTCCACAAGCCTGAACTGATGACAGAGCCGGAAAGAGCTTT
CATCACCGCGGCAAGTAAACACACCCGCTTTGGGAATATTTCTATAGTTC
GTGCAGTCTTATTCATCATCAATACTGAAGGAATTCGTGGACTGTATCGT
GGAATTCAGGTCAACTTTCTAAAGACTGCCCCAGCTATGTCAATAAGCTT
CACCTGTTATGATAGACTAAGATCCGCCCTCGGGGTTCCTCCTGGGAAAT
ATTCCGCTACAAGGGGCTGA
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protein sequence of Gchil6739.t1

>Gchil6739.t1 ID=Gchil6739.t1|Name=Gchil6739.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=340bp
MELSKTAKGAVDESPTVPYASLKSFFAGAVSGAVAKTAVAPLDRTKILMQ
ISQMYGWQDYRGSVWSSMRTIWRTEGFFGFFRGNSATIARIMPYAAIQYS
SFEFYHRTLSNYVFQSDSPNSLKRFMAGAMAGSTSVLCTYPFDLARTVLA
VRTAHASPSRSGTNPGIARTLHSIVREEGITGVYRGMYPTLAGVIPYAGT
SFLTYGVLRRAADRRGVSDAHPITTSLVCGGTAGLVAQCCTYPFDLVRRR
LQALHKPELMTEPERAFITAASKHTRFGNISIVRAVLFIINTEGIRGLYR
GIQVNFLKTAPAMSISFTCYDRLRSALGVPPGKYSATRG*
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mRNA from alignment at tig00004416_pilon:702686..704143-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6739.t1 ID=Gchil6739.t1|Name=Gchil6739.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at tig00004416_pilon:702686..704143- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCTCTCGAAAACAGCAAAGGGTGCTGTCGATGAATCACCAACAGT
TCCGTATGCCTCTCTAAAGTCGTTCTTTGCTGGCGCAGTTTCTGGAGCAG
TAGCGAAAACAGCGGTTGCTCCACTCGACAGGTTCGTTCTGAACTATTTG
TTGGAAATGACTCCAAATCTGTTTCATCGGGGATCGACGACAGGCTATTT
TGTGCGAATAGAATATGCTCGCTTGTTGCAACAAGCGAGCATCTGCACAG
TTTTCACCTCTCTCTAACTCTTCATTTCTTCTTTACGAAACTGCATTTGC
ATTTTTTTTTCTTTTTCATATAGAACAAAGATCCTCATGCAAATCTCCCA
AATGTATGGTTGGCAGGACTACCGCGGTTCAGTATGGAGCTCCATGAGAA
CCATTTGGCGAACAGAAGGGTTCTTCGGGTTCTTTCGCGGCAACTCTGCC
ACGATTGCTCGTATCATGCCCTATGCTGCTATTCAGTATTCTTCCTTCGA
ATTCTATCACCGAACTCTATCAAACTACGTCTTTCAGTCTGACTCTCCTA
ACTCTTTAAAGCGATTCATGGCCGGTGCAATGGCTGGCTCAACTAGTGTG
CTATGTACATACCCTTTTGACCTGGCACGAACAGTTTTGGCGGTCCGAAC
CGCACACGCATCTCCGAGTCGGTCAGGAACAAATCCTGGGATTGCAAGAA
CGCTTCATTCCATAGTGCGTGAAGAAGGAATCACTGGTGTCTACCGTGGC
ATGTACCCTACTTTGGCTGGAGTAATTCCGTATGCCGGGACAAGTTTTCT
TACGTATGGCGTTTTGAGAAGGGCTGCAGATCGTCGTGGCGTTTCCGATG
CGCACCCGATAACCACATCTCTAGTATGTGGCGGAACAGCCGGTCTCGGT
GAGTTGAATATTCCGATGTGACAGCCATCTGCATCCATATTCGCAAGAAT
TCGAACGATTTTTGAACGCTGACACCTTCCCATACTCTGAACTAAGTTGC
CCAATGTTGTACATATCCTTTTGACTTGGTGCGACGAAGACTTCAGGCGC
TCCACAAGCCTGAACTGATGACAGAGCCGGAAAGAGTAGGTGCCACGAGC
TGTCAATCGAAACGTTTTTCAACAGCTGTCATCGCAGTACTAACTGATCA
CCTCTATTTCTAACACTGTTGACGCATCTGTTTTCACAAAAACTTCCGCT
TCTCCGCGATTTCCTTGGCATGGATTTTCAAAGGCTTTCATCACCGCGGC
AAGTAAACACACCCGCTTTGGGAATATTTCTATAGTTCGTGCAGTCTTAT
TCATCATCAATACTGAAGGAATTCGTGGACTGTATCGTGGAATTCAGGTC
AACTTTCTAAAGACTGCCCCAGCTATGTCAATAAGCTTCACCTGTTATGA
TAGACTAAGATCCGCCCTCGGGGTTCCTCCTGGGAAATATTCCGCTACAA
GGGGCTGA
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Coding sequence (CDS) from alignment at tig00004416_pilon:702686..704143-

>Gchil6739.t1 ID=Gchil6739.t1|Name=Gchil6739.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1020bp|location=Sequence derived from alignment at tig00004416_pilon:702686..704143- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCTCTCGAAAACAGCAAAGGGTGCTGTCGATGAATCACCAACAGT
TCCGTATGCCTCTCTAAAGTCGTTCTTTGCTGGCGCAGTTTCTGGAGCAG
TAGCGAAAACAGCGGTTGCTCCACTCGACAGAACAAAGATCCTCATGCAA
ATCTCCCAAATGTATGGTTGGCAGGACTACCGCGGTTCAGTATGGAGCTC
CATGAGAACCATTTGGCGAACAGAAGGGTTCTTCGGGTTCTTTCGCGGCA
ACTCTGCCACGATTGCTCGTATCATGCCCTATGCTGCTATTCAGTATTCT
TCCTTCGAATTCTATCACCGAACTCTATCAAACTACGTCTTTCAGTCTGA
CTCTCCTAACTCTTTAAAGCGATTCATGGCCGGTGCAATGGCTGGCTCAA
CTAGTGTGCTATGTACATACCCTTTTGACCTGGCACGAACAGTTTTGGCG
GTCCGAACCGCACACGCATCTCCGAGTCGGTCAGGAACAAATCCTGGGAT
TGCAAGAACGCTTCATTCCATAGTGCGTGAAGAAGGAATCACTGGTGTCT
ACCGTGGCATGTACCCTACTTTGGCTGGAGTAATTCCGTATGCCGGGACA
AGTTTTCTTACGTATGGCGTTTTGAGAAGGGCTGCAGATCGTCGTGGCGT
TTCCGATGCGCACCCGATAACCACATCTCTAGTATGTGGCGGAACAGCCG
GTCTCGTTGCCCAATGTTGTACATATCCTTTTGACTTGGTGCGACGAAGA
CTTCAGGCGCTCCACAAGCCTGAACTGATGACAGAGCCGGAAAGAGCTTT
CATCACCGCGGCAAGTAAACACACCCGCTTTGGGAATATTTCTATAGTTC
GTGCAGTCTTATTCATCATCAATACTGAAGGAATTCGTGGACTGTATCGT
GGAATTCAGGTCAACTTTCTAAAGACTGCCCCAGCTATGTCAATAAGCTT
CACCTGTTATGATAGACTAAGATCCGCCCTCGGGGTTCCTCCTGGGAAAT
ATTCCGCTACAAGGGGCTGA
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