Gchil6707.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6707.t1
Unique NameGchil6707.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length789
Homology
BLAST of Gchil6707.t1 vs. uniprot
Match: R7Q5A1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5A1_CHOCR)

HSP 1 Score: 206 bits (523), Expect = 4.200e-52
Identity = 172/645 (26.67%), Postives = 311/645 (48.22%), Query Frame = 0
Query:    1 MSVYTAGASSTSAKLVRSLTYALKTTSANCK-----PLLDHCRSQNAFSTISADDTELFFTTVAATLTSDNERTIALSLEVLCHALTTIPPYLLRSHWLHITQKLTSLLKSSKW-SQSARSQAKLLTVMASAVASASSFSVIQPEMKTVISKICQSSLFHALRALSPMQNTDYVCKAALCLVFAVLGTAPREVRTIISQLESGLRERWLFHRNPSVRNSAVLLFAHLLACHGEKAKAQVFEQRLVESCKQLDDIMNFIDMFGPSDGEKRPQ-----LFDDTLRNLSLSELEVRVTTICAYIRHVVG--MRHDVLMPM--PLPTLYRVLLRGIGERYVDAYATGGGKHLLDTDSVLILINSVTIECAETLISVTAASGKDATIVFTHQIGQCLETKLSHVVLRSRKETGVSSNLNERRLMYRIMGGLIEVMGSGIVQYVSGMLEELFSVDVKLCIACSGRDALLANENKGTNNEGNNRSRKRKRFQNQENRQERTVKCKELKSNPKPLNALDEHCAQNATLSKQTLQDALDSVIS-------VFEHRAYMSERVSQHVQKIEEGIIKLMKNGVLLECVIHAANAAGLSGGCNRMYGEASDLLLMGSRMCVSV-----LHGYKERSVRREAARSRSGYESIIHARGP 618
            MS    G  + +AK VR L+ ALK+ + + +      +L H  +  A +T+S++D +  F+ V A L + N  +   SL V        PP L+  HW  +T ++ S+LKS++  ++S  +QA  L  +AS + + +  ++     K  I+  C S++ H  R L     +  V  A++ L+FA+L TAPRE+R ++ +LE  L  +W+ H   SVR ++  L AHLL C  EK K +VF++R+   C +LD+I++ +D F  +   +R       L    L+  + S    R++ + +    ++   + H  L P+   +P L   L RG   R +D Y        L+ D VL LI     E   TL+++T +  + A + + H + Q    +LS+++L+ +   G  + + +R L++  M  ++ V+G G ++ +     +LF  D+ +    +   + L +++    +E   R RKR++  N  NR+          ++ K ++A+D    ++ T +  T++D    +IS       + E+R  +  R    +++IE  + ++ +        +    A  L GG +R+  EAS  LL     C+S+     L       +R    R RS  E ++H RGP
Sbjct:    1 MSALDLGTPAANAKQVRELSQALKSLNDSSRLYCFNAVLAHTGASRALATLSSEDADQLFSAVQAGLVNPNPYSRNASLRVAVLLSKHAPPSLVADHWASLTSRVISILKSARGVNRSLTAQA--LAAVASLITAGAPLTLEGGNQKVSITTACHSAVVHVTRFLEGDPPSGDVALASIALLFAILNTAPRELRQVLPRLELALWGKWVGHPLESVRQASAKLLAHLLICCPEKVKQKVFDERIESGCTKLDEILSIVDHFTSARQSRRAVTPSMLLAVADLKEQAASGFADRLSHLYSAASFMLQEVLNHGSLTPLFISIPKLLHTLCRGFSHRQIDLYTPDLEGVALNADDVLRLIAITERESLRTLVTLTESVDRSAMLPYVHVLAQAFHRQLSYMILKVQTAPGAVAAIVQRSLLFDAMARIVMVLGCGFIEQILEPFVKLFECDIAIYSKAAHAQSYLLSKSSSAISESA-RFRKRRKVANSRNRE----------AHAKEMSAVDSTSDKSVTWASATIRDLQTVLISGTRLLTAIVENRGLLESRAVDALRRIEILMERIERFSTSSTEFLELIRAMALGGGPSRLSAEASPFLLR----CLSLSKQTTLSMASSPQLRSSGLRMRSTAELLLHPRGP 628          
The following BLAST results are available for this feature:
BLAST of Gchil6707.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7Q5A1_CHOCR4.200e-5226.67Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 30..246
e-value: 3.6E-7
score: 32.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 626..640
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 697..744
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 458..478
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 452..478
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 626..788
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 647..673
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 751..765
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 48..433

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:423970..426336 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6707.t1Gchil6707.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004416_pilon 423970..426336 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6707.t1 ID=Gchil6707.t1|Name=Gchil6707.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=789bp
MSVYTAGASSTSAKLVRSLTYALKTTSANCKPLLDHCRSQNAFSTISADD
TELFFTTVAATLTSDNERTIALSLEVLCHALTTIPPYLLRSHWLHITQKL
TSLLKSSKWSQSARSQAKLLTVMASAVASASSFSVIQPEMKTVISKICQS
SLFHALRALSPMQNTDYVCKAALCLVFAVLGTAPREVRTIISQLESGLRE
RWLFHRNPSVRNSAVLLFAHLLACHGEKAKAQVFEQRLVESCKQLDDIMN
FIDMFGPSDGEKRPQLFDDTLRNLSLSELEVRVTTICAYIRHVVGMRHDV
LMPMPLPTLYRVLLRGIGERYVDAYATGGGKHLLDTDSVLILINSVTIEC
AETLISVTAASGKDATIVFTHQIGQCLETKLSHVVLRSRKETGVSSNLNE
RRLMYRIMGGLIEVMGSGIVQYVSGMLEELFSVDVKLCIACSGRDALLAN
ENKGTNNEGNNRSRKRKRFQNQENRQERTVKCKELKSNPKPLNALDEHCA
QNATLSKQTLQDALDSVISVFEHRAYMSERVSQHVQKIEEGIIKLMKNGV
LLECVIHAANAAGLSGGCNRMYGEASDLLLMGSRMCVSVLHGYKERSVRR
EAARSRSGYESIIHARGPAFYLERLCNQQVESNTEEGTTGGHDPETMGDV
HGGEGEKDDCDSNQEKADVNMAVDENEVDTCTGADSAAAVTEGAPAVDES
DKLENDADGHTQDGQKEEQWGNEKSSLSSKETDVHDERERGAQLGSSGKN
DMETREMHVGGVHADAEEEEDEEELIQSLNFAPPDHCN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold