Gchil6783.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6783.t1
Unique NameGchil6783.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length116
Homology
BLAST of Gchil6783.t1 vs. uniprot
Match: A0A2V3J2U8_9FLOR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2U8_9FLOR)

HSP 1 Score: 187 bits (474), Expect = 2.120e-59
Identity = 88/115 (76.52%), Postives = 100/115 (86.96%), Query Frame = 0
Query:    1 MSWRARLSCSLNELRIVYCTSSPSSFGTREFLKSNYADLKALNPGLPIYARPADGVEPHIAARYARGVYDVKDTSNLTADQILGIVKEFEAAATVVNNKVGSSIGGDTFRLADVV 115
            MSWRARLS SLNELR+VYC SSPSS GTREF+K+NY DLKALNPGLPIY RPADGVEPHIAARY RGVY+++ TSN+ +DQILGIVKE EA A +VN+K G  IGGD F+LAD+V
Sbjct:    1 MSWRARLSKSLNELRVVYCASSPSSVGTREFVKNNYTDLKALNPGLPIYIRPADGVEPHIAARYERGVYELRPTSNMNSDQILGIVKELEALAPIVNSKTGGGIGGDAFKLADIV 115          
BLAST of Gchil6783.t1 vs. uniprot
Match: R7QNG8_CHOCR (NADH:ubiquinone oxidoreductase B8 subunit n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNG8_CHOCR)

HSP 1 Score: 160 bits (406), Expect = 4.910e-49
Identity = 73/115 (63.48%), Postives = 92/115 (80.00%), Query Frame = 0
Query:    1 MSWRARLSCSLNELRIVYCTSSPSSFGTREFLKSNYADLKALNPGLPIYARPADGVEPHIAARYARGVYDVKDTSNLTADQILGIVKEFEAAATVVNNKVGSSIGGDTFRLADVV 115
            MSWRARLS SLNELR+VYC  S SS GTR+F+K+NY   K LNPGLPIY RP+DG +PH+AARY RGVY+V+D + L+  Q+LG+V+E EAAA  +N+ VG  IGG+ F+LAD+V
Sbjct:    1 MSWRARLSLSLNELRVVYCAKSASSKGTRDFIKNNYKTFKVLNPGLPIYMRPSDGAQPHVAARYERGVYEVRDVTGLSEAQVLGVVQELEAAAPHINSTVGGGIGGNKFKLADIV 115          
BLAST of Gchil6783.t1 vs. uniprot
Match: A0A7S0G3A6_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G3A6_9RHOD)

HSP 1 Score: 123 bits (309), Expect = 3.040e-34
Identity = 62/116 (53.45%), Postives = 78/116 (67.24%), Query Frame = 0
Query:    1 MSWRARLSCSLNELRIVYCTSSPSSFGTREFLKSNYADLKALNPGLPIYARPADGVEPHIAARYARGVYDVKDTSNLTADQILGIVKEFEAAATVVNNKVGSSIGGDT-FRLADVV 115
            MSW+ARLS +LNELR+VYCT S SS GTR+FLK  Y++LK LNPGLPIY RP DG +  + ARY RGVY   D    +A+ IL IVK+    AT VN ++ +  G     R+ +VV
Sbjct:    1 MSWKARLSVALNELRVVYCTKSGSSEGTRDFLKKYYSELKTLNPGLPIYVRPCDGADAKVLARYERGVYAAHDVQGKSAEGILAIVKDLAEQATDVNARLSTKYGTKADLRIPEVV 116          
BLAST of Gchil6783.t1 vs. uniprot
Match: A0A1X6NVK8_PORUM (L51_S25_CI-B8 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NVK8_PORUM)

HSP 1 Score: 106 bits (264), Expect = 2.080e-27
Identity = 49/107 (45.79%), Postives = 74/107 (69.16%), Query Frame = 0
Query:    1 MSWRARLSCSLNELRIVYCTSSPSSFGTREFLKSNYADLKALNPGLPIYARPADGVEPHIAARYARGVYDVKDTSNLTADQILGIVKEFEAAATVVNNKVGSSIGGD 107
            MSWRA LS S++ELR+VY  +SP+S GTRE+++++Y +LK LNPG+P+  RPADGV P+IAAR+  GVY  + T+ +    ++  VK+  A+A  V   +  +  G+
Sbjct:    1 MSWRAALSRSVHELRVVYDAASPASAGTREWVRAHYRELKLLNPGMPVAVRPADGVSPYIAARFDNGVYRSRSTAGMDTISVMAAVKDLAASAPAVKAAMPPAFAGN 107          
BLAST of Gchil6783.t1 vs. uniprot
Match: A9NSY8_PICSI (L51_S25_CI-B8 domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NSY8_PICSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.090e-24
Identity = 53/102 (51.96%), Postives = 62/102 (60.78%), Query Frame = 0
Query:    1 MSWRARLSCSLNELRIVYCTSSPSSFGTREFLKSNYADLKALNPGLPIYARPADGVEPHIAARYARGVYDVKDTSNLTADQILGIVKEFEAAATVVNNKVGS 102
            M+WRA+LS  L ELRI  C +SPSS  TR+F+ SNY DLK LNP  PI  R   G+EP I ARY  GV        LTADQI   VKE   A   +++K GS
Sbjct:    1 MAWRAQLSRYLKELRIHLCQTSPSSASTRDFILSNYTDLKTLNPSFPILIRECSGIEPRIWARYQYGVEKSVALDGLTADQITEKVKELVRAGAEISSKNGS 102          
BLAST of Gchil6783.t1 vs. uniprot
Match: A0A7S1TGC2_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TGC2_9RHOD)

HSP 1 Score: 98.2 bits (243), Expect = 3.100e-24
Identity = 52/118 (44.07%), Postives = 72/118 (61.02%), Query Frame = 0
Query:    1 MSWRARLSCSLNELRIVYCTSSPSSFGTREFLKSNYADLKALNPGLPIYARPADGVEPHIAARYARGVYDVKDTSNLTADQILGIVKEFEAAATVVNNKVGSS---IGGDTFRLADVV 115
            MSWRA LS  ++ELR+VYCT S +S GTREF+++ Y  LK  NPGLPIY RP +G EP +A R  RG  + K T  + A ++   VK    A++  N  +G+    +GG+    A +V
Sbjct:    1 MSWRATLSKHIHELRVVYCTKSIASAGTREFIRNEYPILKKFNPGLPIYVRPCEGAEPFVAVRLDRGKVERKTTGGMMASEVALSVKLL--ASSPSNLGIGTPPVLLGGENHNFAHIV 116          
BLAST of Gchil6783.t1 vs. uniprot
Match: A0A5J4YQP0_PORPP (NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQP0_PORPP)

HSP 1 Score: 92.4 bits (228), Expect = 4.410e-22
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 0
Query:    1 MSWRARLSCSLNELRIVYCTSSPSSFGTREFLKSNYADLKALNPGLPIYARPADGVEPHIAARYARGVYDVKDTSNLTADQILGIVKEFEAAATVV 96
            M WR  LS +++E+R+VYC  +  S G R F++S YA +KA NP LP+Y RP +G+EP +A RY RGVY  + TS + A+ +   + +      VV
Sbjct:    1 MVWRKALSSAIHEIRVVYCPRAAQSKGMRAFVESEYAGIKAANPTLPVYVRPVEGIEPFLAVRYDRGVYQRRATSGMGAEDVAAALTQLVETTPVV 96          
BLAST of Gchil6783.t1 vs. uniprot
Match: K4AH40_SETIT (L51_S25_CI-B8 domain-containing protein n=19 Tax=PACMAD clade TaxID=147370 RepID=K4AH40_SETIT)

HSP 1 Score: 86.3 bits (212), Expect = 9.670e-20
Identity = 43/99 (43.43%), Postives = 58/99 (58.59%), Query Frame = 0
Query:    1 MSWRARLSCSLNELRIVYCTSSPSSFGTREFLKSNYADLKALNPGLPIYARPADGVEPHIAARYARGVYDVKDTSNLTADQILGIVKEFEAAATVVNNK 99
            M+WRA LS S+ E+R+++C SSP+S   REF+K NY D+K+ NP LP   R   GV+P + ARY  GV    +   LT  QI   ++E   A    N K
Sbjct:    1 MAWRASLSRSVKEIRVLFCQSSPASAAAREFVKKNYGDIKSRNPSLPFLVRECSGVQPQLWARYEMGVERCVNLDGLTEAQIDKKLEELAKAGESANAK 99          
BLAST of Gchil6783.t1 vs. uniprot
Match: A0A0D6R4M3_ARACU (L51_S25_CI-B8 domain-containing protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R4M3_ARACU)

HSP 1 Score: 85.9 bits (211), Expect = 1.490e-19
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 0
Query:    1 MSWRARLSCSLNELRIVYCTSSPSSFGTREFLKSNYADLKALNPGLPIYARPADGVEPHIAARYARGVYDVKDTSNLTADQILGIVKE 88
            M+WRA+LS +L ELRI  C  SPSS  TR+F++SNY DLK LNP  PI  R   G+EP I ARY  G+        LT  QI   V+E
Sbjct:    1 MAWRAQLSRNLKELRIHLCQVSPSSAATRDFIRSNYKDLKTLNPKFPILIRECSGIEPRIWARYQYGIEKSVALDGLTEGQITKKVEE 88          
BLAST of Gchil6783.t1 vs. uniprot
Match: A0A7J7D4G7_TRIWF (NADH dehydrogenase n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7D4G7_TRIWF)

HSP 1 Score: 84.7 bits (208), Expect = 3.800e-19
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = 0
Query:    1 MSWRARLSCSLNELRIVYCTSSPSSFGTREFLKSNYADLKALNPGLPIYARPADGVEPHIAARYARGV 68
            M+WRA+LS S+ ELRI++C SSP S  TREF++ NY +LKALNP LPI  R   G+EP + ARY  GV
Sbjct:    1 MAWRAQLSRSMKELRILFCPSSPESSLTREFIEKNYKELKALNPKLPILIRECTGIEPQLWARYDMGV 68          
The following BLAST results are available for this feature:
BLAST of Gchil6783.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J2U8_9FLOR2.120e-5976.52NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
R7QNG8_CHOCR4.910e-4963.48NADH:ubiquinone oxidoreductase B8 subunit n=1 Tax=... [more]
A0A7S0G3A6_9RHOD3.040e-3453.45Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1X6NVK8_PORUM2.080e-2745.79L51_S25_CI-B8 domain-containing protein n=1 Tax=Po... [more]
A9NSY8_PICSI2.090e-2451.96L51_S25_CI-B8 domain-containing protein n=1 Tax=Pi... [more]
A0A7S1TGC2_9RHOD3.100e-2444.07Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5J4YQP0_PORPP4.410e-2242.71NADH dehydrogenase ubiquinone 1 alpha subcomplex s... [more]
K4AH40_SETIT9.670e-2043.43L51_S25_CI-B8 domain-containing protein n=19 Tax=P... [more]
A0A0D6R4M3_ARACU1.490e-1951.14L51_S25_CI-B8 domain-containing protein n=2 Tax=Ar... [more]
A0A7J7D4G7_TRIWF3.800e-1958.82NADH dehydrogenase n=1 Tax=Tripterygium wilfordii ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007741Ribosomal protein/NADH dehydrogenase domainSMARTSM00916L51_S25_CI_B8_2coord: 20..92
e-value: 1.8E-14
score: 64.1
IPR007741Ribosomal protein/NADH dehydrogenase domainPFAMPF05047L51_S25_CI-B8coord: 28..76
e-value: 1.2E-9
score: 37.9
IPR016464NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2PIRSFPIRSF005822NDUA2coord: 1..101
e-value: 4.1E-26
score: 89.3
IPR016464NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2PANTHERPTHR12878NADH-UBIQUINONE OXIDOREDUCTASE B8 SUBUNITcoord: 1..89
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 1..92
e-value: 8.0E-25
score: 89.0
NoneNo IPR availablePANTHERPTHR12878:SF0NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 2coord: 1..89
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 10..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:1166865..1167396 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6783.t1Gchil6783.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004416_pilon 1166865..1167396 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6783.t1 ID=Gchil6783.t1|Name=Gchil6783.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=116bp
MSWRARLSCSLNELRIVYCTSSPSSFGTREFLKSNYADLKALNPGLPIYA
RPADGVEPHIAARYARGVYDVKDTSNLTADQILGIVKEFEAAATVVNNKV
GSSIGGDTFRLADVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007741Ribosome/NADH_DH
IPR016464NADH_Ub_cplx-1_asu_su-2
IPR036249Thioredoxin-like_sf