Gchil6744.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6744.t1
Unique Name	Gchil6744.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	262

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004416_pilon	contig	tig00004416_pilon:751868..752653 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708750.1
PFAMs	FDX-ACB,Phe_tRNA-synt_N,tRNA-synt_2d
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01889
KEGG Reaction	R03660
KEGG Pathway	ko00970,map00970
KEGG Module	M00359,M00360
Evalue	6.11e-96
EggNOG OGs	COG0016@1\|root,KOG2783@2759\|Eukaryota
EC	6.1.1.20
Description	phenylalanyl-tRNA aminoacylation
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6744	Gchil6744	Gracilaria chilensis NLEC103_M9 male	gene	tig00004416_pilon 751868..752653 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6744.t1.start1	Gchil6744.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004416_pilon 751868..751870 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6744.t1.CDS1	Gchil6744.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004416_pilon 751868..752653 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6744.t1.exon1	Gchil6744.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004416_pilon 751868..752653 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6744.t1.stop1	Gchil6744.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004416_pilon 752651..752653 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6744.t1	Gchil6744.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004416_pilon 751868..752653 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004416_pilon:751868..752653+
coding sequence from alignment at tig00004416_pilon:751868..752653+

mRNA sequence

>Gchil6744.t1 ID=Gchil6744.t1|Name=Gchil6744.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=262bp
MTAHDVPLLQQRHTALLLCGDVYRRDTVDRTHYPVFHQIDAARLYPPSTD
RTVIQRDLQTTLTGLARHLFGQHVKLRWVHAYFPFTHPSFELEVFWEGQW
LELLGCGLLHPRVLANANVSPRVDGWAFGLGLERLAMVLFHVPDIRLFWS
QDPRVTAQFSSGTLLDRYKPFSLFPSIEKHISFWIDGHFHQNDLCEIARG
LAADLVENISLVDRFQREERTSVCYRLVFRSMERSLTHSEVNHIFNNIRQ
NVADSLPVTLR*

spliced messenger RNA

>Gchil6744.t1 ID=Gchil6744.t1|Name=Gchil6744.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00004416_pilon:751868..752653+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCTCATGACGTGCCGCTTTTGCAGCAGCGACATACGGCGCTGTT
GCTGTGCGGCGATGTGTATCGGCGGGACACCGTTGATCGAACGCACTACC
CGGTATTTCACCAAATCGATGCTGCGCGGTTGTATCCGCCGTCCACGGAT
CGCACTGTGATTCAACGCGACTTGCAAACCACTCTCACAGGGTTGGCGCG
CCATTTGTTTGGTCAGCATGTCAAACTACGTTGGGTACACGCCTACTTCC
CCTTCACTCACCCGAGCTTCGAGCTGGAGGTCTTCTGGGAAGGCCAGTGG
CTCGAGCTTCTTGGCTGCGGACTGCTGCACCCGCGCGTGTTGGCAAACGC
TAACGTGTCGCCCCGCGTCGATGGCTGGGCGTTTGGTCTAGGGCTCGAGA
GACTGGCCATGGTTCTGTTTCACGTCCCGGACATCCGACTGTTCTGGTCG
CAGGACCCCCGCGTGACGGCCCAGTTTTCGTCCGGTACGCTGCTGGACCG
CTACAAACCGTTCTCGCTGTTTCCGAGCATTGAAAAGCACATTTCGTTTT
GGATTGACGGCCACTTTCATCAAAACGACCTGTGTGAGATTGCGCGCGGC
CTGGCAGCCGACCTTGTGGAGAATATTTCCCTTGTCGACCGCTTTCAACG
CGAAGAGAGGACCAGCGTGTGTTATCGACTCGTGTTCCGAAGCATGGAAC
GAAGCTTGACTCACTCGGAGGTCAATCACATCTTCAACAACATCCGCCAG
AATGTTGCTGACAGCTTGCCAGTGACGCTCAGATAG

protein sequence of Gchil6744.t1

>Gchil6744.t1 ID=Gchil6744.t1|Name=Gchil6744.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=262bp
MTAHDVPLLQQRHTALLLCGDVYRRDTVDRTHYPVFHQIDAARLYPPSTD
RTVIQRDLQTTLTGLARHLFGQHVKLRWVHAYFPFTHPSFELEVFWEGQW
LELLGCGLLHPRVLANANVSPRVDGWAFGLGLERLAMVLFHVPDIRLFWS
QDPRVTAQFSSGTLLDRYKPFSLFPSIEKHISFWIDGHFHQNDLCEIARG
LAADLVENISLVDRFQREERTSVCYRLVFRSMERSLTHSEVNHIFNNIRQ
NVADSLPVTLR*

mRNA from alignment at tig00004416_pilon:751868..752653+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6744.t1 ID=Gchil6744.t1|Name=Gchil6744.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00004416_pilon:751868..752653+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGGCTCATGACGTGCCGCTTTTGCAGCAGCGACATACGGCGCTGTT
GCTGTGCGGCGATGTGTATCGGCGGGACACCGTTGATCGAACGCACTACC
CGGTATTTCACCAAATCGATGCTGCGCGGTTGTATCCGCCGTCCACGGAT
CGCACTGTGATTCAACGCGACTTGCAAACCACTCTCACAGGGTTGGCGCG
CCATTTGTTTGGTCAGCATGTCAAACTACGTTGGGTACACGCCTACTTCC
CCTTCACTCACCCGAGCTTCGAGCTGGAGGTCTTCTGGGAAGGCCAGTGG
CTCGAGCTTCTTGGCTGCGGACTGCTGCACCCGCGCGTGTTGGCAAACGC
TAACGTGTCGCCCCGCGTCGATGGCTGGGCGTTTGGTCTAGGGCTCGAGA
GACTGGCCATGGTTCTGTTTCACGTCCCGGACATCCGACTGTTCTGGTCG
CAGGACCCCCGCGTGACGGCCCAGTTTTCGTCCGGTACGCTGCTGGACCG
CTACAAACCGTTCTCGCTGTTTCCGAGCATTGAAAAGCACATTTCGTTTT
GGATTGACGGCCACTTTCATCAAAACGACCTGTGTGAGATTGCGCGCGGC
CTGGCAGCCGACCTTGTGGAGAATATTTCCCTTGTCGACCGCTTTCAACG
CGAAGAGAGGACCAGCGTGTGTTATCGACTCGTGTTCCGAAGCATGGAAC
GAAGCTTGACTCACTCGGAGGTCAATCACATCTTCAACAACATCCGCCAG
AATGTTGCTGACAGCTTGCCAGTGACGCTCAGATAG

Coding sequence (CDS) from alignment at tig00004416_pilon:751868..752653+

>Gchil6744.t1 ID=Gchil6744.t1|Name=Gchil6744.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=786bp|location=Sequence derived from alignment at tig00004416_pilon:751868..752653+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGGCTCATGACGTGCCGCTTTTGCAGCAGCGACATACGGCGCTGTT
GCTGTGCGGCGATGTGTATCGGCGGGACACCGTTGATCGAACGCACTACC
CGGTATTTCACCAAATCGATGCTGCGCGGTTGTATCCGCCGTCCACGGAT
CGCACTGTGATTCAACGCGACTTGCAAACCACTCTCACAGGGTTGGCGCG
CCATTTGTTTGGTCAGCATGTCAAACTACGTTGGGTACACGCCTACTTCC
CCTTCACTCACCCGAGCTTCGAGCTGGAGGTCTTCTGGGAAGGCCAGTGG
CTCGAGCTTCTTGGCTGCGGACTGCTGCACCCGCGCGTGTTGGCAAACGC
TAACGTGTCGCCCCGCGTCGATGGCTGGGCGTTTGGTCTAGGGCTCGAGA
GACTGGCCATGGTTCTGTTTCACGTCCCGGACATCCGACTGTTCTGGTCG
CAGGACCCCCGCGTGACGGCCCAGTTTTCGTCCGGTACGCTGCTGGACCG
CTACAAACCGTTCTCGCTGTTTCCGAGCATTGAAAAGCACATTTCGTTTT
GGATTGACGGCCACTTTCATCAAAACGACCTGTGTGAGATTGCGCGCGGC
CTGGCAGCCGACCTTGTGGAGAATATTTCCCTTGTCGACCGCTTTCAACG
CGAAGAGAGGACCAGCGTGTGTTATCGACTCGTGTTCCGAAGCATGGAAC
GAAGCTTGACTCACTCGGAGGTCAATCACATCTTCAACAACATCCGCCAG
AATGTTGCTGACAGCTTGCCAGTGACGCTCAGATAG