Gchil2758.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2758.t1
Unique NameGchil2758.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length687
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:357419..359554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707013.1
Preferred nameACX6
PFAMsACOX,Acyl-CoA_dh_1,Acyl-CoA_dh_M
Max annot lvl2759|Eukaryota
KEGG rclassRC00052,RC00076
KEGG koko:K00232
KEGG ReactionR01175,R01279,R03777,R03857,R03990,R04751,R04754,R07888,R07892,R07896,R07934,R07950
KEGG Pathwayko00071,ko00592,ko01040,ko01100,ko01110,ko01212,ko03320,ko04024,ko04146,map00071,map00592,map01040,map01100,map01110,map01212,map03320,map04024,map04146
KEGG ModuleM00087,M00113
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003995,GO:0003997,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0016627,GO:0016634,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0051791,GO:0055114,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901575
Evalue3.61e-208
EggNOG OGsCOG1960@1|root,KOG0135@2759|Eukaryota
EC1.3.3.6
Descriptionacyl-CoA oxidase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2758Gchil2758Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 357419..359554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2758.t1Gchil2758.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 357419..359554 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2758.t1.start1Gchil2758.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 357419..357421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2758.t1.CDS1Gchil2758.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 357419..358467 +
Gchil2758.t1.CDS2Gchil2758.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 358543..359554 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2758.t1.exon1Gchil2758.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 357419..358467 +
Gchil2758.t1.exon2Gchil2758.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 358543..359554 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2758.t1.intron1Gchil2758.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 358468..358542 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2758.t1.stop1Gchil2758.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 359552..359554 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2758.t1 ID=Gchil2758.t1|Name=Gchil2758.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=687bp
MPASPTLSKRQSPLLLGSPVLSPSSSDIFDNAAHEFTLNEIPTIPRAHLQ
WMHDAQQQPALRASRLQSKPLFDVQNMRALLDHHHLQLRDTLYELFKHPD
FHAHHDLSLSQQRAHVMKMWKKVAALGYLQNSISAGTVEGRQRYEAVIES
CGLLSHSLDIKMSVHYGLFGATIKLLGDDQQAAKWVPLVETCEMLGCFAL
TELGHGSNARGVETVATYDLSSRSFVIHTPTDSAQKYWIGGAYQTARWTV
CFAQLYVRGVRYGVHPFLVRIRKENGENVPGVTLGDCGHKCGLNGVDNGR
IWFDHVSVPWGHMLRRYAQVSVDGSYSSKFKSADELFGASLASLSGGRVS
VAAGCLNQAKIGLSIAVRYALSRRAFGPRDGEEVRLLDYQSHQYRLIPGI
ATTYVMLIVLNELKHIWHHQKLGKKLHIWSSGFKALMTWHSLSTLQEARE
ACGGQGYKSENRIGPIKNGHDVAVTYEGDNHILLQAVTKSVLPEFVRGVK
NGNVFKGHFSYLNDRNALRDVDLKGKDVSSVEFAKIVFRRREAAVFARLT
NRLQMMQKNGLTALEAFNCCGIVVEEAARSHTELLIVELFEKKMTQLEED
GRHDLVNALRKCGSIYVLKRIDDDSGFVRNGALSGADGFRVHERLLEMCK
DIRPHVMDYVNGFGIPAHLLAPIAFDYVAHNSRARL*
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spliced messenger RNA

>Gchil2758.t1 ID=Gchil2758.t1|Name=Gchil2758.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2061bp|location=Sequence derived from alignment at tig00004406_pilon:357419..359554+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGCTTCGCCGACTTTGTCCAAGCGCCAGAGCCCCTTGCTTCTCGG
CTCCCCTGTTCTTTCTCCTTCTTCGTCAGACATTTTCGATAACGCTGCAC
ATGAGTTCACTCTCAATGAAATTCCTACCATTCCTCGCGCCCACCTACAA
TGGATGCACGATGCTCAACAGCAGCCTGCTCTCCGAGCATCTAGACTGCA
ATCCAAACCTCTATTCGATGTACAGAACATGAGAGCTTTGCTAGATCATC
ATCATTTGCAGCTTCGGGATACGCTCTACGAGCTCTTTAAACACCCTGAT
TTCCATGCTCATCACGACCTCTCTTTATCCCAACAACGAGCACACGTGAT
GAAAATGTGGAAGAAAGTAGCAGCCCTTGGCTATCTGCAGAATTCTATTT
CTGCTGGAACTGTTGAGGGTAGACAACGATACGAAGCAGTTATAGAGAGT
TGCGGCCTACTTTCACACAGTCTAGACATAAAAATGTCTGTCCATTACGG
ATTGTTCGGAGCCACAATAAAGCTTCTTGGCGATGATCAACAGGCTGCCA
AATGGGTACCGCTTGTTGAAACCTGTGAAATGCTCGGCTGCTTTGCACTC
ACTGAATTGGGACATGGTTCCAATGCACGCGGTGTTGAAACAGTTGCCAC
TTACGATCTGTCTTCTCGTTCGTTTGTCATTCATACCCCTACGGATTCTG
CCCAGAAGTATTGGATTGGCGGGGCGTATCAAACTGCTAGATGGACCGTT
TGTTTTGCACAATTGTACGTGAGGGGCGTTCGTTATGGCGTTCATCCGTT
TTTAGTACGAATTCGAAAAGAGAATGGTGAAAATGTTCCTGGAGTTACTT
TGGGGGATTGCGGACATAAATGTGGTCTCAATGGTGTGGACAATGGTAGG
ATTTGGTTTGACCATGTTTCCGTTCCGTGGGGACATATGCTACGCCGTTA
TGCTCAGGTTTCTGTAGATGGGTCATACTCCTCAAAATTCAAAAGTGCTG
ACGAGCTTTTCGGAGCGTCTCTAGCCTCATTATCTGGGGGACGAGTTAGT
GTGGCGGCTGGGTGTCTGAATCAGGCGAAGATTGGTCTTTCGATTGCGGT
TCGTTATGCACTGTCTCGAAGAGCATTCGGACCCCGTGATGGAGAAGAAG
TTCGACTTTTGGACTACCAAAGTCATCAATACCGTCTCATTCCCGGGATA
GCCACCACATATGTTATGTTGATCGTTTTGAATGAACTCAAGCACATCTG
GCATCATCAAAAGCTTGGAAAGAAACTACATATCTGGAGTTCTGGCTTCA
AGGCGCTAATGACCTGGCATTCGCTGTCAACTCTTCAAGAGGCAAGGGAA
GCATGTGGCGGACAAGGATACAAATCGGAAAACCGTATTGGGCCGATTAA
AAATGGTCACGATGTGGCTGTTACTTATGAGGGAGACAATCACATTTTGT
TGCAAGCTGTAACCAAGTCCGTTCTGCCTGAATTCGTCCGTGGGGTGAAG
AATGGAAACGTCTTCAAAGGGCATTTCTCTTATTTGAATGATCGCAACGC
ATTGAGAGACGTGGATTTAAAAGGTAAGGACGTGAGCAGTGTAGAATTCG
CAAAGATTGTGTTCCGCAGAAGGGAAGCTGCTGTGTTCGCAAGACTGACG
AATCGCCTGCAAATGATGCAGAAGAATGGACTGACTGCACTGGAAGCTTT
CAATTGTTGCGGAATTGTGGTCGAAGAAGCTGCCCGCTCTCATACCGAAT
TATTGATCGTCGAATTGTTTGAAAAGAAGATGACGCAGCTTGAGGAGGAT
GGGAGGCACGATTTGGTGAACGCTTTGCGAAAATGCGGGTCAATTTATGT
GTTAAAGCGTATCGATGATGATAGTGGATTCGTGAGAAATGGTGCCTTGA
GCGGAGCAGATGGGTTCAGAGTTCATGAACGACTGCTGGAGATGTGTAAG
GATATCCGGCCTCATGTTATGGACTACGTGAACGGCTTTGGAATTCCGGC
GCACTTGCTTGCGCCTATTGCGTTTGACTACGTCGCTCACAACAGTCGGG
CCAGACTCTGA
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protein sequence of Gchil2758.t1

>Gchil2758.t1 ID=Gchil2758.t1|Name=Gchil2758.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=687bp
MPASPTLSKRQSPLLLGSPVLSPSSSDIFDNAAHEFTLNEIPTIPRAHLQ
WMHDAQQQPALRASRLQSKPLFDVQNMRALLDHHHLQLRDTLYELFKHPD
FHAHHDLSLSQQRAHVMKMWKKVAALGYLQNSISAGTVEGRQRYEAVIES
CGLLSHSLDIKMSVHYGLFGATIKLLGDDQQAAKWVPLVETCEMLGCFAL
TELGHGSNARGVETVATYDLSSRSFVIHTPTDSAQKYWIGGAYQTARWTV
CFAQLYVRGVRYGVHPFLVRIRKENGENVPGVTLGDCGHKCGLNGVDNGR
IWFDHVSVPWGHMLRRYAQVSVDGSYSSKFKSADELFGASLASLSGGRVS
VAAGCLNQAKIGLSIAVRYALSRRAFGPRDGEEVRLLDYQSHQYRLIPGI
ATTYVMLIVLNELKHIWHHQKLGKKLHIWSSGFKALMTWHSLSTLQEARE
ACGGQGYKSENRIGPIKNGHDVAVTYEGDNHILLQAVTKSVLPEFVRGVK
NGNVFKGHFSYLNDRNALRDVDLKGKDVSSVEFAKIVFRRREAAVFARLT
NRLQMMQKNGLTALEAFNCCGIVVEEAARSHTELLIVELFEKKMTQLEED
GRHDLVNALRKCGSIYVLKRIDDDSGFVRNGALSGADGFRVHERLLEMCK
DIRPHVMDYVNGFGIPAHLLAPIAFDYVAHNSRARL*
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mRNA from alignment at tig00004406_pilon:357419..359554+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2758.t1 ID=Gchil2758.t1|Name=Gchil2758.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2136bp|location=Sequence derived from alignment at tig00004406_pilon:357419..359554+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTGCTTCGCCGACTTTGTCCAAGCGCCAGAGCCCCTTGCTTCTCGG
CTCCCCTGTTCTTTCTCCTTCTTCGTCAGACATTTTCGATAACGCTGCAC
ATGAGTTCACTCTCAATGAAATTCCTACCATTCCTCGCGCCCACCTACAA
TGGATGCACGATGCTCAACAGCAGCCTGCTCTCCGAGCATCTAGACTGCA
ATCCAAACCTCTATTCGATGTACAGAACATGAGAGCTTTGCTAGATCATC
ATCATTTGCAGCTTCGGGATACGCTCTACGAGCTCTTTAAACACCCTGAT
TTCCATGCTCATCACGACCTCTCTTTATCCCAACAACGAGCACACGTGAT
GAAAATGTGGAAGAAAGTAGCAGCCCTTGGCTATCTGCAGAATTCTATTT
CTGCTGGAACTGTTGAGGGTAGACAACGATACGAAGCAGTTATAGAGAGT
TGCGGCCTACTTTCACACAGTCTAGACATAAAAATGTCTGTCCATTACGG
ATTGTTCGGAGCCACAATAAAGCTTCTTGGCGATGATCAACAGGCTGCCA
AATGGGTACCGCTTGTTGAAACCTGTGAAATGCTCGGCTGCTTTGCACTC
ACTGAATTGGGACATGGTTCCAATGCACGCGGTGTTGAAACAGTTGCCAC
TTACGATCTGTCTTCTCGTTCGTTTGTCATTCATACCCCTACGGATTCTG
CCCAGAAGTATTGGATTGGCGGGGCGTATCAAACTGCTAGATGGACCGTT
TGTTTTGCACAATTGTACGTGAGGGGCGTTCGTTATGGCGTTCATCCGTT
TTTAGTACGAATTCGAAAAGAGAATGGTGAAAATGTTCCTGGAGTTACTT
TGGGGGATTGCGGACATAAATGTGGTCTCAATGGTGTGGACAATGGTAGG
ATTTGGTTTGACCATGTTTCCGTTCCGTGGGGACATATGCTACGCCGTTA
TGCTCAGGTTTCTGTAGATGGGTCATACTCCTCAAAATTCAAAAGTGCTG
ACGAGCTTTTCGGAGCGTCTCTAGCCTCATTATCTGGGGGACGAGTTAGG
TAAGTTGGTTTCATCTATGAATTGCATTGCTTTTGGTTTGTTTTCTCATA
TCTGACGGTGATTCATTCTTTAAGTGTGGCGGCTGGGTGTCTGAATCAGG
CGAAGATTGGTCTTTCGATTGCGGTTCGTTATGCACTGTCTCGAAGAGCA
TTCGGACCCCGTGATGGAGAAGAAGTTCGACTTTTGGACTACCAAAGTCA
TCAATACCGTCTCATTCCCGGGATAGCCACCACATATGTTATGTTGATCG
TTTTGAATGAACTCAAGCACATCTGGCATCATCAAAAGCTTGGAAAGAAA
CTACATATCTGGAGTTCTGGCTTCAAGGCGCTAATGACCTGGCATTCGCT
GTCAACTCTTCAAGAGGCAAGGGAAGCATGTGGCGGACAAGGATACAAAT
CGGAAAACCGTATTGGGCCGATTAAAAATGGTCACGATGTGGCTGTTACT
TATGAGGGAGACAATCACATTTTGTTGCAAGCTGTAACCAAGTCCGTTCT
GCCTGAATTCGTCCGTGGGGTGAAGAATGGAAACGTCTTCAAAGGGCATT
TCTCTTATTTGAATGATCGCAACGCATTGAGAGACGTGGATTTAAAAGGT
AAGGACGTGAGCAGTGTAGAATTCGCAAAGATTGTGTTCCGCAGAAGGGA
AGCTGCTGTGTTCGCAAGACTGACGAATCGCCTGCAAATGATGCAGAAGA
ATGGACTGACTGCACTGGAAGCTTTCAATTGTTGCGGAATTGTGGTCGAA
GAAGCTGCCCGCTCTCATACCGAATTATTGATCGTCGAATTGTTTGAAAA
GAAGATGACGCAGCTTGAGGAGGATGGGAGGCACGATTTGGTGAACGCTT
TGCGAAAATGCGGGTCAATTTATGTGTTAAAGCGTATCGATGATGATAGT
GGATTCGTGAGAAATGGTGCCTTGAGCGGAGCAGATGGGTTCAGAGTTCA
TGAACGACTGCTGGAGATGTGTAAGGATATCCGGCCTCATGTTATGGACT
ACGTGAACGGCTTTGGAATTCCGGCGCACTTGCTTGCGCCTATTGCGTTT
GACTACGTCGCTCACAACAGTCGGGCCAGACTCTGA
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Coding sequence (CDS) from alignment at tig00004406_pilon:357419..359554+

>Gchil2758.t1 ID=Gchil2758.t1|Name=Gchil2758.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2061bp|location=Sequence derived from alignment at tig00004406_pilon:357419..359554+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTGCTTCGCCGACTTTGTCCAAGCGCCAGAGCCCCTTGCTTCTCGG
CTCCCCTGTTCTTTCTCCTTCTTCGTCAGACATTTTCGATAACGCTGCAC
ATGAGTTCACTCTCAATGAAATTCCTACCATTCCTCGCGCCCACCTACAA
TGGATGCACGATGCTCAACAGCAGCCTGCTCTCCGAGCATCTAGACTGCA
ATCCAAACCTCTATTCGATGTACAGAACATGAGAGCTTTGCTAGATCATC
ATCATTTGCAGCTTCGGGATACGCTCTACGAGCTCTTTAAACACCCTGAT
TTCCATGCTCATCACGACCTCTCTTTATCCCAACAACGAGCACACGTGAT
GAAAATGTGGAAGAAAGTAGCAGCCCTTGGCTATCTGCAGAATTCTATTT
CTGCTGGAACTGTTGAGGGTAGACAACGATACGAAGCAGTTATAGAGAGT
TGCGGCCTACTTTCACACAGTCTAGACATAAAAATGTCTGTCCATTACGG
ATTGTTCGGAGCCACAATAAAGCTTCTTGGCGATGATCAACAGGCTGCCA
AATGGGTACCGCTTGTTGAAACCTGTGAAATGCTCGGCTGCTTTGCACTC
ACTGAATTGGGACATGGTTCCAATGCACGCGGTGTTGAAACAGTTGCCAC
TTACGATCTGTCTTCTCGTTCGTTTGTCATTCATACCCCTACGGATTCTG
CCCAGAAGTATTGGATTGGCGGGGCGTATCAAACTGCTAGATGGACCGTT
TGTTTTGCACAATTGTACGTGAGGGGCGTTCGTTATGGCGTTCATCCGTT
TTTAGTACGAATTCGAAAAGAGAATGGTGAAAATGTTCCTGGAGTTACTT
TGGGGGATTGCGGACATAAATGTGGTCTCAATGGTGTGGACAATGGTAGG
ATTTGGTTTGACCATGTTTCCGTTCCGTGGGGACATATGCTACGCCGTTA
TGCTCAGGTTTCTGTAGATGGGTCATACTCCTCAAAATTCAAAAGTGCTG
ACGAGCTTTTCGGAGCGTCTCTAGCCTCATTATCTGGGGGACGAGTTAGT
GTGGCGGCTGGGTGTCTGAATCAGGCGAAGATTGGTCTTTCGATTGCGGT
TCGTTATGCACTGTCTCGAAGAGCATTCGGACCCCGTGATGGAGAAGAAG
TTCGACTTTTGGACTACCAAAGTCATCAATACCGTCTCATTCCCGGGATA
GCCACCACATATGTTATGTTGATCGTTTTGAATGAACTCAAGCACATCTG
GCATCATCAAAAGCTTGGAAAGAAACTACATATCTGGAGTTCTGGCTTCA
AGGCGCTAATGACCTGGCATTCGCTGTCAACTCTTCAAGAGGCAAGGGAA
GCATGTGGCGGACAAGGATACAAATCGGAAAACCGTATTGGGCCGATTAA
AAATGGTCACGATGTGGCTGTTACTTATGAGGGAGACAATCACATTTTGT
TGCAAGCTGTAACCAAGTCCGTTCTGCCTGAATTCGTCCGTGGGGTGAAG
AATGGAAACGTCTTCAAAGGGCATTTCTCTTATTTGAATGATCGCAACGC
ATTGAGAGACGTGGATTTAAAAGGTAAGGACGTGAGCAGTGTAGAATTCG
CAAAGATTGTGTTCCGCAGAAGGGAAGCTGCTGTGTTCGCAAGACTGACG
AATCGCCTGCAAATGATGCAGAAGAATGGACTGACTGCACTGGAAGCTTT
CAATTGTTGCGGAATTGTGGTCGAAGAAGCTGCCCGCTCTCATACCGAAT
TATTGATCGTCGAATTGTTTGAAAAGAAGATGACGCAGCTTGAGGAGGAT
GGGAGGCACGATTTGGTGAACGCTTTGCGAAAATGCGGGTCAATTTATGT
GTTAAAGCGTATCGATGATGATAGTGGATTCGTGAGAAATGGTGCCTTGA
GCGGAGCAGATGGGTTCAGAGTTCATGAACGACTGCTGGAGATGTGTAAG
GATATCCGGCCTCATGTTATGGACTACGTGAACGGCTTTGGAATTCCGGC
GCACTTGCTTGCGCCTATTGCGTTTGACTACGTCGCTCACAACAGTCGGG
CCAGACTCTGA
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