Gchil2830.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2830.t2
Unique Name	Gchil2830.t2
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	371

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004406_pilon	contig	tig00004406_pilon:783682..784895 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	269797.Mbar_A0545
PFAMs	DUF4062,WD40
Max annot lvl	2157\|Archaea
Evalue	3.53e-05
EggNOG OGs	COG2319@1\|root,arCOG02561@2157\|Archaea
Description	Tetratricopeptide repeat
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2830	Gchil2830	Gracilaria chilensis NLEC103_M9 male	gene	tig00004406_pilon 782809..784895 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2830.t2	Gchil2830.t2	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004406_pilon 783682..784895 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2830.t2.start1	Gchil2830.t2.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004406_pilon 783682..783684 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2830.t2.CDS1	Gchil2830.t2.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004406_pilon 783682..784733 +
Gchil2830.t2.CDS2	Gchil2830.t2.CDS2	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004406_pilon 784835..784895 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2830.t2.exon1	Gchil2830.t2.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004406_pilon 783682..784733 +
Gchil2830.t2.exon2	Gchil2830.t2.exon2	Gracilaria chilensis NLEC103_M9 male	exon	tig00004406_pilon 784835..784895 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2830.t2.intron1	Gchil2830.t2.intron1	Gracilaria chilensis NLEC103_M9 male	intron	tig00004406_pilon 784734..784834 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2830.t2.stop1	Gchil2830.t2.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004406_pilon 784893..784895 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004406_pilon:783682..784895+
coding sequence from alignment at tig00004406_pilon:783682..784895+

mRNA sequence

>Gchil2830.t2 ID=Gchil2830.t2|Name=Gchil2830.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=371bp
MVNEGSRLVYTTRDKRFLGQTDKRIEFSEKEAHGELARRMLMRHAGFGAE
HRLDAVNKNAFESILHICQGLPLALGIAGGSVWKYSHEQYVDQEQNAWSD
FHRDLLSKRKDLLDIPAAGYGTLTNIVDVSLEVLEMRSECRNYQKLFRAF
CVVQKQQCVPLNMLKNLWGLESSAEVEKVVEMMNGVSVLQVRRESGFISV
QLHDLVLNTAVLKASEEHEAQMFFRTLIHNYIRPETTEDGNWLRAAWWNT
GDDGYIHNNLCRVLRNAGYVDELLWLLSKPQWIVMRLQNGGISVVEQDLE
QGIDLAGAGSTEISDERKHLEIIGKAARMSWGYVNNNPYEAWFQMHGRLL
CGWCNAGYDPEPWTYYWREL*

spliced messenger RNA

>Gchil2830.t2 ID=Gchil2830.t2|Name=Gchil2830.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at tig00004406_pilon:783682..784895+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAACGAAGGCAGTCGACTGGTGTACACCACGAGAGACAAGCGTTT
TCTGGGACAAACTGATAAGCGGATTGAGTTTTCGGAGAAAGAAGCCCATG
GCGAGTTAGCCAGACGTATGCTGATGAGGCATGCTGGTTTTGGTGCAGAG
CACAGGCTTGACGCCGTGAACAAGAATGCCTTCGAATCTATTCTTCACAT
ATGCCAGGGGCTCCCACTTGCACTTGGCATTGCTGGAGGCTCAGTATGGA
AGTATTCTCATGAGCAGTATGTAGATCAAGAGCAGAATGCATGGTCCGAT
TTTCATCGAGATCTGTTGTCGAAGCGAAAAGACTTGCTGGATATCCCTGC
GGCGGGATACGGCACTCTTACGAACATTGTGGATGTTTCCCTTGAAGTGC
TGGAGATGCGGAGTGAATGCAGGAACTACCAGAAGCTGTTTCGGGCCTTT
TGTGTTGTTCAAAAACAACAGTGTGTTCCGCTCAACATGCTGAAGAACCT
GTGGGGCTTGGAGAGCTCGGCTGAAGTTGAGAAAGTTGTAGAAATGATGA
ATGGTGTCTCAGTCTTGCAAGTGAGGAGGGAAAGTGGTTTTATATCTGTT
CAGCTACACGACTTGGTCTTAAACACTGCTGTTCTAAAGGCATCAGAAGA
GCACGAAGCTCAAATGTTCTTTCGAACTTTAATTCACAACTACATTCGAC
CTGAGACCACTGAAGACGGCAACTGGTTGCGAGCagcgtggtggaatact
ggcgatgacggttatattcacaacaatctttgcagagtacttcgcaatgc
aggatacgttgatgaattgctatggctactgtcaaaaccgcaatggatcg
tgATGCGTCTGCAAAACGGCGGGATTTCGGTCGTAGAGCAAGACCTCGAA
CAAGGAATAGATCTCGCCGGGGCGGGCAGTACCGAGATCTCGGATGAAAG
AAAGCATCTGGAAATCATTGGAAAGGCTGCCCGCATGAGTTGGGGGTATG
TTAACAACAATCCGTATGAAGCGTGGTTTCAGATGCACGGTCGATTGTTG
TGCGGGTGGTGCAATGCTGGATACGATCCCGAGCCTTGGACGTATTATTG
GCGTGAGCTATGA

protein sequence of Gchil2830.t2

>Gchil2830.t2 ID=Gchil2830.t2|Name=Gchil2830.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=371bp
MVNEGSRLVYTTRDKRFLGQTDKRIEFSEKEAHGELARRMLMRHAGFGAE
HRLDAVNKNAFESILHICQGLPLALGIAGGSVWKYSHEQYVDQEQNAWSD
FHRDLLSKRKDLLDIPAAGYGTLTNIVDVSLEVLEMRSECRNYQKLFRAF
CVVQKQQCVPLNMLKNLWGLESSAEVEKVVEMMNGVSVLQVRRESGFISV
QLHDLVLNTAVLKASEEHEAQMFFRTLIHNYIRPETTEDGNWLRAAWWNT
GDDGYIHNNLCRVLRNAGYVDELLWLLSKPQWIVMRLQNGGISVVEQDLE
QGIDLAGAGSTEISDERKHLEIIGKAARMSWGYVNNNPYEAWFQMHGRLL
CGWCNAGYDPEPWTYYWREL*

mRNA from alignment at tig00004406_pilon:783682..784895+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2830.t2 ID=Gchil2830.t2|Name=Gchil2830.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1214bp|location=Sequence derived from alignment at tig00004406_pilon:783682..784895+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGAACGAAGGCAGTCGACTGGTGTACACCACGAGAGACAAGCGTTT
TCTGGGACAAACTGATAAGCGGATTGAGTTTTCGGAGAAAGAAGCCCATG
GCGAGTTAGCCAGACGTATGCTGATGAGGCATGCTGGTTTTGGTGCAGAG
CACAGGCTTGACGCCGTGAACAAGAATGCCTTCGAATCTATTCTTCACAT
ATGCCAGGGGCTCCCACTTGCACTTGGCATTGCTGGAGGCTCAGTATGGA
AGTATTCTCATGAGCAGTATGTAGATCAAGAGCAGAATGCATGGTCCGAT
TTTCATCGAGATCTGTTGTCGAAGCGAAAAGACTTGCTGGATATCCCTGC
GGCGGGATACGGCACTCTTACGAACATTGTGGATGTTTCCCTTGAAGTGC
TGGAGATGCGGAGTGAATGCAGGAACTACCAGAAGCTGTTTCGGGCCTTT
TGTGTTGTTCAAAAACAACAGTGTGTTCCGCTCAACATGCTGAAGAACCT
GTGGGGCTTGGAGAGCTCGGCTGAAGTTGAGAAAGTTGTAGAAATGATGA
ATGGTGTCTCAGTCTTGCAAGTGAGGAGGGAAAGTGGTTTTATATCTGTT
CAGCTACACGACTTGGTCTTAAACACTGCTGTTCTAAAGGCATCAGAAGA
GCACGAAGCTCAAATGTTCTTTCGAACTTTAATTCACAACTACATTCGAC
CTGAGACCACTGAAGACGGCAACTGGTTGCGAGCagcgtggtggaatact
ggcgatgacggttatattcacaacaatctttgcagagtacttcgcaatgc
aggatacgttgatgaattgctatggctactgtcaaaaccgcaatggatcg
tgATGCGTCTGCAAAACGGCGGGATTTCGGTCGTAGAGCAAGACCTCGAA
CAAGGAATAGATCTCGCCGGGGCGGGCAGTACCGAGATCTCGGATGAAAG
AAAGCATCTGGAAATCATTGGAAAGGCTGCCCGCATGAGTTGGGGGTATG
TTAACAACAATCCGTATGAAGCGTGGTTTCAGATGCACGGTCGATTGTTG
TGGTATGCGACGCAGTGTGAAAAGACTCGAAAGTTTGTCGAGGAGATAGA
GCGTAGTGCACCGAGACCGTGGGCTAAAGCTTCTGTAGGATTTTTGCAAC
CAGCGGGTGGTGCAATGCTGGATACGATCCCGAGCCTTGGACGTATTATT
GGCGTGAGCTATGA

Coding sequence (CDS) from alignment at tig00004406_pilon:783682..784895+

>Gchil2830.t2 ID=Gchil2830.t2|Name=Gchil2830.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1113bp|location=Sequence derived from alignment at tig00004406_pilon:783682..784895+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGAACGAAGGCAGTCGACTGGTGTACACCACGAGAGACAAGCGTTT
TCTGGGACAAACTGATAAGCGGATTGAGTTTTCGGAGAAAGAAGCCCATG
GCGAGTTAGCCAGACGTATGCTGATGAGGCATGCTGGTTTTGGTGCAGAG
CACAGGCTTGACGCCGTGAACAAGAATGCCTTCGAATCTATTCTTCACAT
ATGCCAGGGGCTCCCACTTGCACTTGGCATTGCTGGAGGCTCAGTATGGA
AGTATTCTCATGAGCAGTATGTAGATCAAGAGCAGAATGCATGGTCCGAT
TTTCATCGAGATCTGTTGTCGAAGCGAAAAGACTTGCTGGATATCCCTGC
GGCGGGATACGGCACTCTTACGAACATTGTGGATGTTTCCCTTGAAGTGC
TGGAGATGCGGAGTGAATGCAGGAACTACCAGAAGCTGTTTCGGGCCTTT
TGTGTTGTTCAAAAACAACAGTGTGTTCCGCTCAACATGCTGAAGAACCT
GTGGGGCTTGGAGAGCTCGGCTGAAGTTGAGAAAGTTGTAGAAATGATGA
ATGGTGTCTCAGTCTTGCAAGTGAGGAGGGAAAGTGGTTTTATATCTGTT
CAGCTACACGACTTGGTCTTAAACACTGCTGTTCTAAAGGCATCAGAAGA
GCACGAAGCTCAAATGTTCTTTCGAACTTTAATTCACAACTACATTCGAC
CTGAGACCACTGAAGACGGCAACTGGTTGCGAGCagcgtggtggaatact
ggcgatgacggttatattcacaacaatctttgcagagtacttcgcaatgc
aggatacgttgatgaattgctatggctactgtcaaaaccgcaatggatcg
tgATGCGTCTGCAAAACGGCGGGATTTCGGTCGTAGAGCAAGACCTCGAA
CAAGGAATAGATCTCGCCGGGGCGGGCAGTACCGAGATCTCGGATGAAAG
AAAGCATCTGGAAATCATTGGAAAGGCTGCCCGCATGAGTTGGGGGTATG
TTAACAACAATCCGTATGAAGCGTGGTTTCAGATGCACGGTCGATTGTTG
TGCGGGTGGTGCAATGCTGGATACGATCCCGAGCCTTGGACGTATTATTG
GCGTGAGCTATGA