Gchil2830.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2830.t1
Unique NameGchil2830.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length567
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:782809..784895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3880.AES83116
PFAMsWD40
Max annot lvl33090|Viridiplantae
KEGG koko:K14963,ko:K16482
KEGG Pathwayko04934,map04934
Evalue1.37e-06
EggNOG OGsKOG0266@1|root,KOG4658@1|root,KOG0266@2759|Eukaryota,KOG4658@2759|Eukaryota,37P7V@33090|Viridiplantae,3GA8I@35493|Streptophyta
DescriptionWD repeat-containing protein
COG categoryS
BRITEko00000,ko00001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2830Gchil2830Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 782809..784895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2830.t1Gchil2830.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 782809..784895 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2830.t1.start1Gchil2830.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 782809..782811 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2830.t1.CDS1Gchil2830.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 782809..783218 +
Gchil2830.t1.CDS2Gchil2830.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 783504..784733 +
Gchil2830.t1.CDS3Gchil2830.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 784835..784895 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2830.t1.exon1Gchil2830.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 782809..783218 +
Gchil2830.t1.exon2Gchil2830.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 783504..784733 +
Gchil2830.t1.exon3Gchil2830.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 784835..784895 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2830.t1.intron1Gchil2830.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 783219..783503 +
Gchil2830.t1.intron2Gchil2830.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 784734..784834 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2830.t1.stop1Gchil2830.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 784893..784895 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2830.t1 ID=Gchil2830.t1|Name=Gchil2830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=567bp
MDPPAFQDLFAVLQKLETTVNRFFERKDIAQDNKTKLRQLRSQYSGANDM
IRQLEGLSTPDFVTLARLSRFYDVLKQNSVELNDLQSDIDKATVLNRVRR
MEKVLGQCQTDVNEFFQFLTDNVSPTLRDAQNSGQDSIVERTNGSRLAEQ
VRASKTLQEASDKASIWFRPHKCLFLVDDIWWLNGIDSSVFTLLCTMVNE
GSRLVYTTRDKRFLGQTDKRIEFSEKEAHGELARRMLMRHAGFGAEHRLD
AVNKNAFESILHICQGLPLALGIAGGSVWKYSHEQYVDQEQNAWSDFHRD
LLSKRKDLLDIPAAGYGTLTNIVDVSLEVLEMRSECRNYQKLFRAFCVVQ
KQQCVPLNMLKNLWGLESSAEVEKVVEMMNGVSVLQVRRESGFISVQLHD
LVLNTAVLKASEEHEAQMFFRTLIHNYIRPETTEDGNWLRAAWWNTGDDG
YIHNNLCRVLRNAGYVDELLWLLSKPQWIVMRLQNGGISVVEQDLEQGID
LAGAGSTEISDERKHLEIIGKAARMSWGYVNNNPYEAWFQMHGRLLCGWC
NAGYDPEPWTYYWREL*
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spliced messenger RNA

>Gchil2830.t1 ID=Gchil2830.t1|Name=Gchil2830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1701bp|location=Sequence derived from alignment at tig00004406_pilon:782809..784895+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCCTCCGGCGTTTCAGGACCTGTTTGCGGTGCTTCAAAAGCTCGA
GACCACTGTGAACAGGTTCTTCGAACGCAAGGATATTGCCCAAGATAACA
AGACGAAGCTTCGCCAACTGCGAAGTCAGTACAGTGGTGCGAATGATATG
ATTCGACAGCTTGAAGGCTTGTCAACCCCCGACTTCGTAACACTCGCAAG
GTTGTCGCGTTTTTATGACGTTTTGAAACAAAACTCCGTCGAACTCAACG
ACTTGCAGTCAGATATCGACAAAGCTACGGTACTAAATCGAGTCCGCCGA
ATGGAAAAAGTATTGGGGCAGTGCCAGACGGATGTGAACGAGTTCTTCCA
ATTCCTAACTGACAACGTCTCTCCGACGCTTAGAGATGCACAGAATTCGG
GCCAAGatagTATTGTAGAACGGACAAACGGTTCACGGCTGGCGGAACAG
GTAAGAGCTTCCAAAACGCTGCAAGAGGCATCGGACAAGGCCTCTATATG
GTTCAGACCTCATAAGTGTCTGTTTCTTGTAGATGACATATGGTGGTTGA
ACGGCATTGATTCCAGTGTGTTCACCCTACTTTGCACAATGGTGAACGAA
GGCAGTCGACTGGTGTACACCACGAGAGACAAGCGTTTTCTGGGACAAAC
TGATAAGCGGATTGAGTTTTCGGAGAAAGAAGCCCATGGCGAGTTAGCCA
GACGTATGCTGATGAGGCATGCTGGTTTTGGTGCAGAGCACAGGCTTGAC
GCCGTGAACAAGAATGCCTTCGAATCTATTCTTCACATATGCCAGGGGCT
CCCACTTGCACTTGGCATTGCTGGAGGCTCAGTATGGAAGTATTCTCATG
AGCAGTATGTAGATCAAGAGCAGAATGCATGGTCCGATTTTCATCGAGAT
CTGTTGTCGAAGCGAAAAGACTTGCTGGATATCCCTGCGGCGGGATACGG
CACTCTTACGAACATTGTGGATGTTTCCCTTGAAGTGCTGGAGATGCGGA
GTGAATGCAGGAACTACCAGAAGCTGTTTCGGGCCTTTTGTGTTGTTCAA
AAACAACAGTGTGTTCCGCTCAACATGCTGAAGAACCTGTGGGGCTTGGA
GAGCTCGGCTGAAGTTGAGAAAGTTGTAGAAATGATGAATGGTGTCTCAG
TCTTGCAAGTGAGGAGGGAAAGTGGTTTTATATCTGTTCAGCTACACGAC
TTGGTCTTAAACACTGCTGTTCTAAAGGCATCAGAAGAGCACGAAGCTCA
AATGTTCTTTCGAACTTTAATTCACAACTACATTCGACCTGAGACCACTG
AAGACGGCAACTGGTTGCGAGCagcgtggtggaatactggcgatgacggt
tatattcacaacaatctttgcagagtacttcgcaatgcaggatacgttga
tgaattgctatggctactgtcaaaaccgcaatggatcgtgATGCGTCTGC
AAAACGGCGGGATTTCGGTCGTAGAGCAAGACCTCGAACAAGGAATAGAT
CTCGCCGGGGCGGGCAGTACCGAGATCTCGGATGAAAGAAAGCATCTGGA
AATCATTGGAAAGGCTGCCCGCATGAGTTGGGGGTATGTTAACAACAATC
CGTATGAAGCGTGGTTTCAGATGCACGGTCGATTGTTGTGCGGGTGGTGC
AATGCTGGATACGATCCCGAGCCTTGGACGTATTATTGGCGTGAGCTATG
A
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protein sequence of Gchil2830.t1

>Gchil2830.t1 ID=Gchil2830.t1|Name=Gchil2830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=567bp
MDPPAFQDLFAVLQKLETTVNRFFERKDIAQDNKTKLRQLRSQYSGANDM
IRQLEGLSTPDFVTLARLSRFYDVLKQNSVELNDLQSDIDKATVLNRVRR
MEKVLGQCQTDVNEFFQFLTDNVSPTLRDAQNSGQDSIVERTNGSRLAEQ
VRASKTLQEASDKASIWFRPHKCLFLVDDIWWLNGIDSSVFTLLCTMVNE
GSRLVYTTRDKRFLGQTDKRIEFSEKEAHGELARRMLMRHAGFGAEHRLD
AVNKNAFESILHICQGLPLALGIAGGSVWKYSHEQYVDQEQNAWSDFHRD
LLSKRKDLLDIPAAGYGTLTNIVDVSLEVLEMRSECRNYQKLFRAFCVVQ
KQQCVPLNMLKNLWGLESSAEVEKVVEMMNGVSVLQVRRESGFISVQLHD
LVLNTAVLKASEEHEAQMFFRTLIHNYIRPETTEDGNWLRAAWWNTGDDG
YIHNNLCRVLRNAGYVDELLWLLSKPQWIVMRLQNGGISVVEQDLEQGID
LAGAGSTEISDERKHLEIIGKAARMSWGYVNNNPYEAWFQMHGRLLCGWC
NAGYDPEPWTYYWREL*
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mRNA from alignment at tig00004406_pilon:782809..784895+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2830.t1 ID=Gchil2830.t1|Name=Gchil2830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2087bp|location=Sequence derived from alignment at tig00004406_pilon:782809..784895+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCCTCCGGCGTTTCAGGACCTGTTTGCGGTGCTTCAAAAGCTCGA
GACCACTGTGAACAGGTTCTTCGAACGCAAGGATATTGCCCAAGATAACA
AGACGAAGCTTCGCCAACTGCGAAGTCAGTACAGTGGTGCGAATGATATG
ATTCGACAGCTTGAAGGCTTGTCAACCCCCGACTTCGTAACACTCGCAAG
GTTGTCGCGTTTTTATGACGTTTTGAAACAAAACTCCGTCGAACTCAACG
ACTTGCAGTCAGATATCGACAAAGCTACGGTACTAAATCGAGTCCGCCGA
ATGGAAAAAGTATTGGGGCAGTGCCAGACGGATGTGAACGAGTTCTTCCA
ATTCCTAACTGACAACGTCTCTCCGACGCTTAGAGATGCACAGAATTCGG
GCCAAGataggtacttactggataacaacgtgccacccaacccaccccga
ctgactctggactacagcactaccaccacatgcgagggagaactgaaaaa
agcaattctggacgacaagtccgagaatcgcattgttgctgttctcgcca
ccgggaaaggtggcgttggcaaaacatgcgctctgcgaggccttgcgtcc
gacaaagaagtcaaggaacgatttcctggtggtacTCTTTACATTCAACT
TGGCAATGATGCCACACTATCGACGATCATACAGGGTATCGCAAGTATTG
TAGAACGGACAAACGGTTCACGGCTGGCGGAACAGGTAAGAGCTTCCAAA
ACGCTGCAAGAGGCATCGGACAAGGCCTCTATATGGTTCAGACCTCATAA
GTGTCTGTTTCTTGTAGATGACATATGGTGGTTGAACGGCATTGATTCCA
GTGTGTTCACCCTACTTTGCACAATGGTGAACGAAGGCAGTCGACTGGTG
TACACCACGAGAGACAAGCGTTTTCTGGGACAAACTGATAAGCGGATTGA
GTTTTCGGAGAAAGAAGCCCATGGCGAGTTAGCCAGACGTATGCTGATGA
GGCATGCTGGTTTTGGTGCAGAGCACAGGCTTGACGCCGTGAACAAGAAT
GCCTTCGAATCTATTCTTCACATATGCCAGGGGCTCCCACTTGCACTTGG
CATTGCTGGAGGCTCAGTATGGAAGTATTCTCATGAGCAGTATGTAGATC
AAGAGCAGAATGCATGGTCCGATTTTCATCGAGATCTGTTGTCGAAGCGA
AAAGACTTGCTGGATATCCCTGCGGCGGGATACGGCACTCTTACGAACAT
TGTGGATGTTTCCCTTGAAGTGCTGGAGATGCGGAGTGAATGCAGGAACT
ACCAGAAGCTGTTTCGGGCCTTTTGTGTTGTTCAAAAACAACAGTGTGTT
CCGCTCAACATGCTGAAGAACCTGTGGGGCTTGGAGAGCTCGGCTGAAGT
TGAGAAAGTTGTAGAAATGATGAATGGTGTCTCAGTCTTGCAAGTGAGGA
GGGAAAGTGGTTTTATATCTGTTCAGCTACACGACTTGGTCTTAAACACT
GCTGTTCTAAAGGCATCAGAAGAGCACGAAGCTCAAATGTTCTTTCGAAC
TTTAATTCACAACTACATTCGACCTGAGACCACTGAAGACGGCAACTGGT
TGCGAGCagcgtggtggaatactggcgatgacggttatattcacaacaat
ctttgcagagtacttcgcaatgcaggatacgttgatgaattgctatggct
actgtcaaaaccgcaatggatcgtgATGCGTCTGCAAAACGGCGGGATTT
CGGTCGTAGAGCAAGACCTCGAACAAGGAATAGATCTCGCCGGGGCGGGC
AGTACCGAGATCTCGGATGAAAGAAAGCATCTGGAAATCATTGGAAAGGC
TGCCCGCATGAGTTGGGGGTATGTTAACAACAATCCGTATGAAGCGTGGT
TTCAGATGCACGGTCGATTGTTGTGGTATGCGACGCAGTGTGAAAAGACT
CGAAAGTTTGTCGAGGAGATAGAGCGTAGTGCACCGAGACCGTGGGCTAA
AGCTTCTGTAGGATTTTTGCAACCAGCGGGTGGTGCAATGCTGGATACGA
TCCCGAGCCTTGGACGTATTATTGGCGTGAGCTATGA
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Coding sequence (CDS) from alignment at tig00004406_pilon:782809..784895+

>Gchil2830.t1 ID=Gchil2830.t1|Name=Gchil2830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1701bp|location=Sequence derived from alignment at tig00004406_pilon:782809..784895+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCCTCCGGCGTTTCAGGACCTGTTTGCGGTGCTTCAAAAGCTCGA
GACCACTGTGAACAGGTTCTTCGAACGCAAGGATATTGCCCAAGATAACA
AGACGAAGCTTCGCCAACTGCGAAGTCAGTACAGTGGTGCGAATGATATG
ATTCGACAGCTTGAAGGCTTGTCAACCCCCGACTTCGTAACACTCGCAAG
GTTGTCGCGTTTTTATGACGTTTTGAAACAAAACTCCGTCGAACTCAACG
ACTTGCAGTCAGATATCGACAAAGCTACGGTACTAAATCGAGTCCGCCGA
ATGGAAAAAGTATTGGGGCAGTGCCAGACGGATGTGAACGAGTTCTTCCA
ATTCCTAACTGACAACGTCTCTCCGACGCTTAGAGATGCACAGAATTCGG
GCCAAGatagTATTGTAGAACGGACAAACGGTTCACGGCTGGCGGAACAG
GTAAGAGCTTCCAAAACGCTGCAAGAGGCATCGGACAAGGCCTCTATATG
GTTCAGACCTCATAAGTGTCTGTTTCTTGTAGATGACATATGGTGGTTGA
ACGGCATTGATTCCAGTGTGTTCACCCTACTTTGCACAATGGTGAACGAA
GGCAGTCGACTGGTGTACACCACGAGAGACAAGCGTTTTCTGGGACAAAC
TGATAAGCGGATTGAGTTTTCGGAGAAAGAAGCCCATGGCGAGTTAGCCA
GACGTATGCTGATGAGGCATGCTGGTTTTGGTGCAGAGCACAGGCTTGAC
GCCGTGAACAAGAATGCCTTCGAATCTATTCTTCACATATGCCAGGGGCT
CCCACTTGCACTTGGCATTGCTGGAGGCTCAGTATGGAAGTATTCTCATG
AGCAGTATGTAGATCAAGAGCAGAATGCATGGTCCGATTTTCATCGAGAT
CTGTTGTCGAAGCGAAAAGACTTGCTGGATATCCCTGCGGCGGGATACGG
CACTCTTACGAACATTGTGGATGTTTCCCTTGAAGTGCTGGAGATGCGGA
GTGAATGCAGGAACTACCAGAAGCTGTTTCGGGCCTTTTGTGTTGTTCAA
AAACAACAGTGTGTTCCGCTCAACATGCTGAAGAACCTGTGGGGCTTGGA
GAGCTCGGCTGAAGTTGAGAAAGTTGTAGAAATGATGAATGGTGTCTCAG
TCTTGCAAGTGAGGAGGGAAAGTGGTTTTATATCTGTTCAGCTACACGAC
TTGGTCTTAAACACTGCTGTTCTAAAGGCATCAGAAGAGCACGAAGCTCA
AATGTTCTTTCGAACTTTAATTCACAACTACATTCGACCTGAGACCACTG
AAGACGGCAACTGGTTGCGAGCagcgtggtggaatactggcgatgacggt
tatattcacaacaatctttgcagagtacttcgcaatgcaggatacgttga
tgaattgctatggctactgtcaaaaccgcaatggatcgtgATGCGTCTGC
AAAACGGCGGGATTTCGGTCGTAGAGCAAGACCTCGAACAAGGAATAGAT
CTCGCCGGGGCGGGCAGTACCGAGATCTCGGATGAAAGAAAGCATCTGGA
AATCATTGGAAAGGCTGCCCGCATGAGTTGGGGGTATGTTAACAACAATC
CGTATGAAGCGTGGTTTCAGATGCACGGTCGATTGTTGTGCGGGTGGTGC
AATGCTGGATACGATCCCGAGCCTTGGACGTATTATTGGCGTGAGCTATG
A
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