Gchil2798.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2798.t1
Unique NameGchil2798.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length281
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:556028..556969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2798Gchil2798Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 556028..556969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2798.t1Gchil2798.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 556028..556969 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2798.t1.stop1Gchil2798.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 556028..556030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2798.t1.CDS1Gchil2798.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 556028..556720 -
Gchil2798.t1.CDS2Gchil2798.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 556820..556969 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2798.t1.exon1Gchil2798.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 556028..556720 -
Gchil2798.t1.exon2Gchil2798.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 556820..556969 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2798.t1.intron1Gchil2798.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 556721..556819 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2798.t1.start1Gchil2798.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 556967..556969 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2798.t1 ID=Gchil2798.t1|Name=Gchil2798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=281bp
MRYHRCCANIVYEQAACIIISRPIAKGSKVDLNTGIISHATAPKAVDAKT
YLVHVFNLGNPDAPKTVADEHDLYEERQTAFRDGPPGQEERGYDILCSYE
IDPPDPQIPSIRETLNSLRTSGYEIIRVCVLSGGKRYPKHFTVILRAFCT
YFRFMETLHLLELNSRVLFPLVSFYVVSADPSILEHAARSDVSKLLQQVK
ELLEISIKGVQVSSELSALHISLDFVTSWLRRATVNLLTGNNPSLRRKKD
SAEAQNEVYVSLQLQVPVLRDSFSALWITA*
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spliced messenger RNA

>Gchil2798.t1 ID=Gchil2798.t1|Name=Gchil2798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00004406_pilon:556028..556969- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGTATCACCGGTGCTGTGCGAATATTGTGTATGAGCAAGCAGCATG
CATCATAATATCTCGTCCTATAGCCAAGGGTTCCAAGGTAGATCTTAATA
CTGGTATAATTTCGCATGCCACTGCCCCAAAGGCAGTTGATGCTAAGACC
TATTTGGTTCATGTTTTCAACTTGGGCAACCCAGATGCACCAAAGACGGT
GGCTGACGAGCACGATTTGTATGAAGAAAGGCAAACGGCTTTCAGAGACG
GACCTCCTGGTCAGGAAGAACGAGGCTATGACATTCTATGCAGTTATGAG
ATCGATCCGCCTGATCCCCAAATCCCTTCGATACGTGAGACGCTAAACTC
CTTGAGAACTAGTGGGTACGAAATCATTCGTGTGTGCGTCTTGTCTGGTG
GGAAGAGATATCCGAAGCACTTTACAGTCATTCTGAGAGCTTTTTGCACA
TATTTTCGATTCATGGAGACCTTACATCTCCTAGAACTTAACTCTCGTGT
TCTATTTCCATTGGTATCGTTTTATGTTGTGTCTGCAGATCCATCAATAT
TGGAGCATGCTGCCCGTTCTGACGTTTCGAAGCTTCTACAACAAGTAAAA
GAGCTTCTGGAAATTTCGATTAAGGGTGTACAAGTGTCGAGCGAGTTATC
TGCTCTCCATATATCGCTGGACTTTGTGACATCATGGCTACGAAGGGCTA
CCGTGAATTTGCTTACGGGAAATAATCCATCTCTTCGTCGAAAAAAAGAT
TCTGCTGAAGCTCAGAACGAGGTATACGTTTCTCTGCAGTTGCAAGTTCC
CGTCCTTAGGGACTCCTTTAGTGCTTTGTGGATCACGGCCTGA
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protein sequence of Gchil2798.t1

>Gchil2798.t1 ID=Gchil2798.t1|Name=Gchil2798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=281bp
MRYHRCCANIVYEQAACIIISRPIAKGSKVDLNTGIISHATAPKAVDAKT
YLVHVFNLGNPDAPKTVADEHDLYEERQTAFRDGPPGQEERGYDILCSYE
IDPPDPQIPSIRETLNSLRTSGYEIIRVCVLSGGKRYPKHFTVILRAFCT
YFRFMETLHLLELNSRVLFPLVSFYVVSADPSILEHAARSDVSKLLQQVK
ELLEISIKGVQVSSELSALHISLDFVTSWLRRATVNLLTGNNPSLRRKKD
SAEAQNEVYVSLQLQVPVLRDSFSALWITA*
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mRNA from alignment at tig00004406_pilon:556028..556969-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2798.t1 ID=Gchil2798.t1|Name=Gchil2798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00004406_pilon:556028..556969- (Gracilaria chilensis NLEC103_M9 male)
ATGAGGTATCACCGGTGCTGTGCGAATATTGTGTATGAGCAAGCAGCATG
CATCATAATATCTCGTCCTATAGCCAAGGGTTCCAAGGTAGATCTTAATA
CTGGTATAATTTCGCATGCCACTGCCCCAAAGGCAGTTGATGCTAAGACC
GTGATGCTCTGTACCTAGCAAGGATTCTTCAATCCGGGCAAATTTCTTCG
TGAAAAAACTGATAAACTTCGCCGTAACGTCTTGTTGCCGACATGCAAGT
ATTTGGTTCATGTTTTCAACTTGGGCAACCCAGATGCACCAAAGACGGTG
GCTGACGAGCACGATTTGTATGAAGAAAGGCAAACGGCTTTCAGAGACGG
ACCTCCTGGTCAGGAAGAACGAGGCTATGACATTCTATGCAGTTATGAGA
TCGATCCGCCTGATCCCCAAATCCCTTCGATACGTGAGACGCTAAACTCC
TTGAGAACTAGTGGGTACGAAATCATTCGTGTGTGCGTCTTGTCTGGTGG
GAAGAGATATCCGAAGCACTTTACAGTCATTCTGAGAGCTTTTTGCACAT
ATTTTCGATTCATGGAGACCTTACATCTCCTAGAACTTAACTCTCGTGTT
CTATTTCCATTGGTATCGTTTTATGTTGTGTCTGCAGATCCATCAATATT
GGAGCATGCTGCCCGTTCTGACGTTTCGAAGCTTCTACAACAAGTAAAAG
AGCTTCTGGAAATTTCGATTAAGGGTGTACAAGTGTCGAGCGAGTTATCT
GCTCTCCATATATCGCTGGACTTTGTGACATCATGGCTACGAAGGGCTAC
CGTGAATTTGCTTACGGGAAATAATCCATCTCTTCGTCGAAAAAAAGATT
CTGCTGAAGCTCAGAACGAGGTATACGTTTCTCTGCAGTTGCAAGTTCCC
GTCCTTAGGGACTCCTTTAGTGCTTTGTGGATCACGGCCTGA
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Coding sequence (CDS) from alignment at tig00004406_pilon:556028..556969-

>Gchil2798.t1 ID=Gchil2798.t1|Name=Gchil2798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=843bp|location=Sequence derived from alignment at tig00004406_pilon:556028..556969- (Gracilaria chilensis NLEC103_M9 male)
ATGAGGTATCACCGGTGCTGTGCGAATATTGTGTATGAGCAAGCAGCATG
CATCATAATATCTCGTCCTATAGCCAAGGGTTCCAAGGTAGATCTTAATA
CTGGTATAATTTCGCATGCCACTGCCCCAAAGGCAGTTGATGCTAAGACC
TATTTGGTTCATGTTTTCAACTTGGGCAACCCAGATGCACCAAAGACGGT
GGCTGACGAGCACGATTTGTATGAAGAAAGGCAAACGGCTTTCAGAGACG
GACCTCCTGGTCAGGAAGAACGAGGCTATGACATTCTATGCAGTTATGAG
ATCGATCCGCCTGATCCCCAAATCCCTTCGATACGTGAGACGCTAAACTC
CTTGAGAACTAGTGGGTACGAAATCATTCGTGTGTGCGTCTTGTCTGGTG
GGAAGAGATATCCGAAGCACTTTACAGTCATTCTGAGAGCTTTTTGCACA
TATTTTCGATTCATGGAGACCTTACATCTCCTAGAACTTAACTCTCGTGT
TCTATTTCCATTGGTATCGTTTTATGTTGTGTCTGCAGATCCATCAATAT
TGGAGCATGCTGCCCGTTCTGACGTTTCGAAGCTTCTACAACAAGTAAAA
GAGCTTCTGGAAATTTCGATTAAGGGTGTACAAGTGTCGAGCGAGTTATC
TGCTCTCCATATATCGCTGGACTTTGTGACATCATGGCTACGAAGGGCTA
CCGTGAATTTGCTTACGGGAAATAATCCATCTCTTCGTCGAAAAAAAGAT
TCTGCTGAAGCTCAGAACGAGGTATACGTTTCTCTGCAGTTGCAAGTTCC
CGTCCTTAGGGACTCCTTTAGTGCTTTGTGGATCACGGCCTGA
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