Gchil2780.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2780.t1
Unique Name	Gchil2780.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	449

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004406_pilon	contig	tig00004406_pilon:491580..492926 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	15368.BRADI2G55470.1
PFAMs	WD40
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K10570
KEGG Pathway	ko03420,ko04120,map03420,map04120
KEGG Module	M00386
GOs	GO:0000209,GO:0003674,GO:0005488,GO:0005575,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006283,GO:0006289,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009893,GO:0009987,GO:0010604,GO:0016567,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0032446,GO:0032991,GO:0033554,GO:0034641,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044877,GO:0045739,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051716,GO:0051865,GO:0060255,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:1901360,GO:1901564,GO:2001020,GO:2001022
Evalue	3.57e-19
EggNOG OGs	KOG4283@1\|root,KOG4283@2759\|Eukaryota,37N2M@33090\|Viridiplantae,3G9EF@35493\|Streptophyta,3KQCD@4447\|Liliopsida,3I5V5@38820\|Poales
Description	WD40 repeats
COG category	KL
BRITE	ko00000,ko00001,ko00002,ko03400,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2780	Gchil2780	Gracilaria chilensis NLEC103_M9 male	gene	tig00004406_pilon 491580..492926 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2780.t1.start1	Gchil2780.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004406_pilon 491580..491582 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2780.t1.CDS1	Gchil2780.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004406_pilon 491580..492926 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2780.t1.exon1	Gchil2780.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004406_pilon 491580..492926 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2780.t1.stop1	Gchil2780.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004406_pilon 492924..492926 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2780.t1	Gchil2780.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004406_pilon 491580..492926 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004406_pilon:491580..492926+
coding sequence from alignment at tig00004406_pilon:491580..492926+

mRNA sequence

>Gchil2780.t1 ID=Gchil2780.t1|Name=Gchil2780.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=449bp
MHRLLTARECGEEVHGIDDISSERWTKLEVDQSRSFKCDPIDRIRAIDLD
TPSGQLLLCAGLNFDDRGGAVAIHFYPVRDSKVEDDPVEVHFHPESDGVR
CVKWFPNDAAIFLTGNHRRLNMHSWAEVHVWDTDCFRSVSHFRMDEPGVR
ALDLSSAPGARQELIATVVEGAHDLRLLDMNSGASTHRLAGHQKPLNSVR
WAPLHPFLLVSGDEGGQVCLFDVRRSGRDACLLKFDCSRRFNTHEQKTGF
ILNGYTSLNSNTGELRAVKRQRIQQLSRNSDKPLLGLGCAWRPELSKQAR
RHKRLEHPGQATLDTFGAAQMIRFSIDGTQVISTGRGTSFRLWDLITGRM
ISEFHDTSLYTSSREQYMQMAGDGIHMIWGVHGELQVIDVQDGMMVHTAE
ADAERFHGMVVHPLEEEVISAHRNELKVWSYETDSYNEPRDENENVRW*

spliced messenger RNA

>Gchil2780.t1 ID=Gchil2780.t1|Name=Gchil2780.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at tig00004406_pilon:491580..492926+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCGACTGCTTACTGCTCGTGAATGCGGTGAAGAAGTTCACGGCAT
CGACGATATCTCTAGCGAGAGATGGACAAAACTCGAAGTTGATCAGTCTC
GAAGTTTCAAATGCGACCCGATAGATAGGATTCGTGCGATTGACTTGGAT
ACACCTTCAGGCCAGCTTTTACTCTGCGCAGGACTGAACTTTGACGACCG
TGGCGGCGCAGTAGCAATTCATTTTTATCCAGTACGCGACTCAAAGGTGG
AAGACGACCCAGTTGAGGTTCACTTCCATCCAGAGAGCGATGGAGTCCGG
TGCGTGAAGTGGTTTCCAAACGATGCTGCGATATTTTTGACTGGAAATCA
CAGACGCCTTAACATGCATTCATGGGCGGAGGTACATGTGTGGGACACTG
ACTGTTTCCGGTCTGTTTCTCATTTTCGAATGGATGAACCAGGCGTTCGG
GCGTTGGATTTGTCATCTGCCCCGGGTGCGAGACAGGAATTGATTGCCAC
CGTTGTAGAAGGTGCACATGACTTGCGACTGTTGGACATGAATAGTGGGG
CTAGCACTCATCGTTTGGCGGGGCATCAGAAGCCATTAAACAGCGTGAGA
TGGGCTCCTCTGCATCCATTCCTTCTGGTATCCGGGGATGAGGGGGGGCA
GGTGTGTCTCTTCGATGTTCGACGTTCTGGGCGTGATGCCTGCTTACTCA
AGTTTGATTGCTCACGACGGTTTAATACACATGAACAGAAAACGGGGTTT
ATACTAAACGGCTACACATCTTTGAATAGCAATACAGGAGAATTGCGTGC
TGTCAAAAGACAACGAATACAACAATTGTCAAGGAACAGCGATAAACCAC
TTCTTGGATTAGGTTGTGCCTGGAGGCCAGAACTGTCAAAGCAAGCGCGG
CGGCACAAAAGGTTGGAACATCCAGGGCAGGCTACGCTCGATACCTTCGG
TGCGGCTCAGATGATTCGCTTTTCAATCGATGGGACCCAAGTGATTAGTA
CAGGCAGAGGCACGTCATTCCGGTTATGGGACTTGATCACAGGTAGAATG
ATATCCGAGTTCCACGATACGTCGTTGTACACTTCATCGAGGGAGCAATA
TATGCAAATGGCTGGGGATGGCATTCACATGATATGGGGTGTACATGGCG
AATTACAAGTTATCGATGTACAGGACGGCATGATGGTTCACACAGCTGAG
GCGGATGCAGAGCGTTTTCACGGAATGGTGGTACACCCTCTTGAAGAAGA
AGTCATAAGCGCCCATCGGAACGAGTTGAAAGTTTGGTCGTACGAAACAG
ATTCCTACAATGAACCTAGGGACGAGAACGAAAATGTCCGATGGTAA

protein sequence of Gchil2780.t1

>Gchil2780.t1 ID=Gchil2780.t1|Name=Gchil2780.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=449bp
MHRLLTARECGEEVHGIDDISSERWTKLEVDQSRSFKCDPIDRIRAIDLD
TPSGQLLLCAGLNFDDRGGAVAIHFYPVRDSKVEDDPVEVHFHPESDGVR
CVKWFPNDAAIFLTGNHRRLNMHSWAEVHVWDTDCFRSVSHFRMDEPGVR
ALDLSSAPGARQELIATVVEGAHDLRLLDMNSGASTHRLAGHQKPLNSVR
WAPLHPFLLVSGDEGGQVCLFDVRRSGRDACLLKFDCSRRFNTHEQKTGF
ILNGYTSLNSNTGELRAVKRQRIQQLSRNSDKPLLGLGCAWRPELSKQAR
RHKRLEHPGQATLDTFGAAQMIRFSIDGTQVISTGRGTSFRLWDLITGRM
ISEFHDTSLYTSSREQYMQMAGDGIHMIWGVHGELQVIDVQDGMMVHTAE
ADAERFHGMVVHPLEEEVISAHRNELKVWSYETDSYNEPRDENENVRW*

mRNA from alignment at tig00004406_pilon:491580..492926+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2780.t1 ID=Gchil2780.t1|Name=Gchil2780.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at tig00004406_pilon:491580..492926+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATCGACTGCTTACTGCTCGTGAATGCGGTGAAGAAGTTCACGGCAT
CGACGATATCTCTAGCGAGAGATGGACAAAACTCGAAGTTGATCAGTCTC
GAAGTTTCAAATGCGACCCGATAGATAGGATTCGTGCGATTGACTTGGAT
ACACCTTCAGGCCAGCTTTTACTCTGCGCAGGACTGAACTTTGACGACCG
TGGCGGCGCAGTAGCAATTCATTTTTATCCAGTACGCGACTCAAAGGTGG
AAGACGACCCAGTTGAGGTTCACTTCCATCCAGAGAGCGATGGAGTCCGG
TGCGTGAAGTGGTTTCCAAACGATGCTGCGATATTTTTGACTGGAAATCA
CAGACGCCTTAACATGCATTCATGGGCGGAGGTACATGTGTGGGACACTG
ACTGTTTCCGGTCTGTTTCTCATTTTCGAATGGATGAACCAGGCGTTCGG
GCGTTGGATTTGTCATCTGCCCCGGGTGCGAGACAGGAATTGATTGCCAC
CGTTGTAGAAGGTGCACATGACTTGCGACTGTTGGACATGAATAGTGGGG
CTAGCACTCATCGTTTGGCGGGGCATCAGAAGCCATTAAACAGCGTGAGA
TGGGCTCCTCTGCATCCATTCCTTCTGGTATCCGGGGATGAGGGGGGGCA
GGTGTGTCTCTTCGATGTTCGACGTTCTGGGCGTGATGCCTGCTTACTCA
AGTTTGATTGCTCACGACGGTTTAATACACATGAACAGAAAACGGGGTTT
ATACTAAACGGCTACACATCTTTGAATAGCAATACAGGAGAATTGCGTGC
TGTCAAAAGACAACGAATACAACAATTGTCAAGGAACAGCGATAAACCAC
TTCTTGGATTAGGTTGTGCCTGGAGGCCAGAACTGTCAAAGCAAGCGCGG
CGGCACAAAAGGTTGGAACATCCAGGGCAGGCTACGCTCGATACCTTCGG
TGCGGCTCAGATGATTCGCTTTTCAATCGATGGGACCCAAGTGATTAGTA
CAGGCAGAGGCACGTCATTCCGGTTATGGGACTTGATCACAGGTAGAATG
ATATCCGAGTTCCACGATACGTCGTTGTACACTTCATCGAGGGAGCAATA
TATGCAAATGGCTGGGGATGGCATTCACATGATATGGGGTGTACATGGCG
AATTACAAGTTATCGATGTACAGGACGGCATGATGGTTCACACAGCTGAG
GCGGATGCAGAGCGTTTTCACGGAATGGTGGTACACCCTCTTGAAGAAGA
AGTCATAAGCGCCCATCGGAACGAGTTGAAAGTTTGGTCGTACGAAACAG
ATTCCTACAATGAACCTAGGGACGAGAACGAAAATGTCCGATGGTAA

Coding sequence (CDS) from alignment at tig00004406_pilon:491580..492926+

>Gchil2780.t1 ID=Gchil2780.t1|Name=Gchil2780.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1347bp|location=Sequence derived from alignment at tig00004406_pilon:491580..492926+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATCGACTGCTTACTGCTCGTGAATGCGGTGAAGAAGTTCACGGCAT
CGACGATATCTCTAGCGAGAGATGGACAAAACTCGAAGTTGATCAGTCTC
GAAGTTTCAAATGCGACCCGATAGATAGGATTCGTGCGATTGACTTGGAT
ACACCTTCAGGCCAGCTTTTACTCTGCGCAGGACTGAACTTTGACGACCG
TGGCGGCGCAGTAGCAATTCATTTTTATCCAGTACGCGACTCAAAGGTGG
AAGACGACCCAGTTGAGGTTCACTTCCATCCAGAGAGCGATGGAGTCCGG
TGCGTGAAGTGGTTTCCAAACGATGCTGCGATATTTTTGACTGGAAATCA
CAGACGCCTTAACATGCATTCATGGGCGGAGGTACATGTGTGGGACACTG
ACTGTTTCCGGTCTGTTTCTCATTTTCGAATGGATGAACCAGGCGTTCGG
GCGTTGGATTTGTCATCTGCCCCGGGTGCGAGACAGGAATTGATTGCCAC
CGTTGTAGAAGGTGCACATGACTTGCGACTGTTGGACATGAATAGTGGGG
CTAGCACTCATCGTTTGGCGGGGCATCAGAAGCCATTAAACAGCGTGAGA
TGGGCTCCTCTGCATCCATTCCTTCTGGTATCCGGGGATGAGGGGGGGCA
GGTGTGTCTCTTCGATGTTCGACGTTCTGGGCGTGATGCCTGCTTACTCA
AGTTTGATTGCTCACGACGGTTTAATACACATGAACAGAAAACGGGGTTT
ATACTAAACGGCTACACATCTTTGAATAGCAATACAGGAGAATTGCGTGC
TGTCAAAAGACAACGAATACAACAATTGTCAAGGAACAGCGATAAACCAC
TTCTTGGATTAGGTTGTGCCTGGAGGCCAGAACTGTCAAAGCAAGCGCGG
CGGCACAAAAGGTTGGAACATCCAGGGCAGGCTACGCTCGATACCTTCGG
TGCGGCTCAGATGATTCGCTTTTCAATCGATGGGACCCAAGTGATTAGTA
CAGGCAGAGGCACGTCATTCCGGTTATGGGACTTGATCACAGGTAGAATG
ATATCCGAGTTCCACGATACGTCGTTGTACACTTCATCGAGGGAGCAATA
TATGCAAATGGCTGGGGATGGCATTCACATGATATGGGGTGTACATGGCG
AATTACAAGTTATCGATGTACAGGACGGCATGATGGTTCACACAGCTGAG
GCGGATGCAGAGCGTTTTCACGGAATGGTGGTACACCCTCTTGAAGAAGA
AGTCATAAGCGCCCATCGGAACGAGTTGAAAGTTTGGTCGTACGAAACAG
ATTCCTACAATGAACCTAGGGACGAGAACGAAAATGTCCGATGGTAA