Gchil2799.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2799.t1
Unique NameGchil2799.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length175
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:577498..578169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2799Gchil2799Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 577498..578169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2799.t1Gchil2799.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 577498..578169 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2799.t1.stop1Gchil2799.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 577498..577500 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2799.t1.CDS1Gchil2799.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 577498..577771 -
Gchil2799.t1.CDS2Gchil2799.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 577919..578169 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2799.t1.exon1Gchil2799.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 577498..577771 -
Gchil2799.t1.exon2Gchil2799.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 577919..578169 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2799.t1.intron1Gchil2799.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 577772..577918 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2799.t1.start1Gchil2799.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 578167..578169 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2799.t1 ID=Gchil2799.t1|Name=Gchil2799.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=175bp
MAHITAENVRHVANSINEIFKKVVIDAMNGENEDDQGPVAKAREKEDDAQ
HDLAQGVLDYKYASSNRTYTSKDDDRKAITKAHKNAAKSRTALQRRQSYQ
FGILTDLFACSHNLATQQPIFPLSPALPDSPLVADPALVSVVTPWQHNVS
AAFKPLSGALSVSGENADASEDVE*
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spliced messenger RNA

>Gchil2799.t1 ID=Gchil2799.t1|Name=Gchil2799.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00004406_pilon:577498..578169- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCACATTACCGCCGAGAATGTGCGCCATGTTGCGAATAGCATCAA
CGAGATTTTTAAGAAGGTGGTCATCGACGCGATGAATGGAGAGAATGAAG
ACGACCAAGGTCCGGTGGCTAAGGCGCGTGAGAAGGAAGACGATGCGCAA
CATGATCTCGCCCAGGGGGTTTTGGACTACAAATACGCATCGTCTAATAG
GACATATACTTCAAAAGACGACGACAGAAAAGCGATCACCAAGGCACACA
AGAATGCCGCGAAATCGAGGACGGCGCTGCAGCGCCGCCAGAGCTACCAG
TTCGGAATTCTCACCGATCTGTTCGCGTGCAGTCACAATTTGGCGACACA
GCAGCCCATCTTCCCTCTTTCTCCAGCACTGCCGGATTCACCGCTTGTGG
CCGATCCTGCGCTGGTTTCTGTCGTCACACCGTGGCAGCACAACGTTTCT
GCCGCTTTTAAGCCGCTTTCAGGTGCTCTTTCAGTCAGCGGCGAAAACGC
TGATGCCAGCGAAGATGTGGAATGA
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protein sequence of Gchil2799.t1

>Gchil2799.t1 ID=Gchil2799.t1|Name=Gchil2799.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=175bp
MAHITAENVRHVANSINEIFKKVVIDAMNGENEDDQGPVAKAREKEDDAQ
HDLAQGVLDYKYASSNRTYTSKDDDRKAITKAHKNAAKSRTALQRRQSYQ
FGILTDLFACSHNLATQQPIFPLSPALPDSPLVADPALVSVVTPWQHNVS
AAFKPLSGALSVSGENADASEDVE*
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mRNA from alignment at tig00004406_pilon:577498..578169-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2799.t1 ID=Gchil2799.t1|Name=Gchil2799.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=672bp|location=Sequence derived from alignment at tig00004406_pilon:577498..578169- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCACATTACCGCCGAGAATGTGCGCCATGTTGCGAATAGCATCAA
CGAGATTTTTAAGAAGGTGGTCATCGACGCGATGAATGGAGAGAATGAAG
ACGACCAAGGTCCGGTGGCTAAGGCGCGTGAGAAGGAAGACGATGCGCAA
CATGATCTCGCCCAGGGGGTTTTGGACTACAAATACGCATCGTCTAATAG
GACATATACTTCAAAAGACGACGACAGAAAAGCGATCACCAAGGCACACA
AGTAGCGTTTCCAAAAGTAGAAGCACCATTAAAAACGCCGCGCATCTTTC
GAAGCGAACAAGAAGCGCCGTGCGGAGGAGAGAGAATAGCGCGAACGACG
TCGTTCTGCTTTTCCGTTTCCACTCTTATGTGCCCACACGCGCATCAGGA
ATGCCGCGAAATCGAGGACGGCGCTGCAGCGCCGCCAGAGCTACCAGTTC
GGAATTCTCACCGATCTGTTCGCGTGCAGTCACAATTTGGCGACACAGCA
GCCCATCTTCCCTCTTTCTCCAGCACTGCCGGATTCACCGCTTGTGGCCG
ATCCTGCGCTGGTTTCTGTCGTCACACCGTGGCAGCACAACGTTTCTGCC
GCTTTTAAGCCGCTTTCAGGTGCTCTTTCAGTCAGCGGCGAAAACGCTGA
TGCCAGCGAAGATGTGGAATGA
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Coding sequence (CDS) from alignment at tig00004406_pilon:577498..578169-

>Gchil2799.t1 ID=Gchil2799.t1|Name=Gchil2799.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=525bp|location=Sequence derived from alignment at tig00004406_pilon:577498..578169- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCACATTACCGCCGAGAATGTGCGCCATGTTGCGAATAGCATCAA
CGAGATTTTTAAGAAGGTGGTCATCGACGCGATGAATGGAGAGAATGAAG
ACGACCAAGGTCCGGTGGCTAAGGCGCGTGAGAAGGAAGACGATGCGCAA
CATGATCTCGCCCAGGGGGTTTTGGACTACAAATACGCATCGTCTAATAG
GACATATACTTCAAAAGACGACGACAGAAAAGCGATCACCAAGGCACACA
AGAATGCCGCGAAATCGAGGACGGCGCTGCAGCGCCGCCAGAGCTACCAG
TTCGGAATTCTCACCGATCTGTTCGCGTGCAGTCACAATTTGGCGACACA
GCAGCCCATCTTCCCTCTTTCTCCAGCACTGCCGGATTCACCGCTTGTGG
CCGATCCTGCGCTGGTTTCTGTCGTCACACCGTGGCAGCACAACGTTTCT
GCCGCTTTTAAGCCGCTTTCAGGTGCTCTTTCAGTCAGCGGCGAAAACGC
TGATGCCAGCGAAGATGTGGAATGA
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