Gchil5738.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5738.t1
Unique NameGchil5738.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:1234435..1235799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog70448.A0A096PA36
PFAMsTHUMP
Max annot lvl3041|Chlorophyta
KEGG koko:K06963
Evalue6.06e-24
EggNOG OGsCOG1818@1|root,KOG3943@2759|Eukaryota,37PFC@33090|Viridiplantae,34N5G@3041|Chlorophyta
DescriptionTHUMP
COG categoryS
BRITEko00000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5738Gchil5738Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 1234435..1235799 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5738.t1.stop1Gchil5738.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 1234435..1234437 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5738.t1.CDS1Gchil5738.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 1234435..1235799 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5738.t1.exon1Gchil5738.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 1234435..1235799 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5738.t1.start1Gchil5738.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 1235797..1235799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5738.t1Gchil5738.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 1234435..1235799 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5738.t1 ID=Gchil5738.t1|Name=Gchil5738.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=455bp
MDATLPQKRDAPKNAALSSRARRKKFRTVGVHTVRRADLSQAQCGVLVGC
TPGHEHHAFRDAVVLLSRFVKEACAGGGEAPRHAGRDGDEGEHKGDGDSK
ASTGGDPLEKELDDLRRGGSDKVFTRVVADVKGAVFLRVNDQKADLEQVV
ERALLEARQTGNAGSRHCIRVLPIYGTCYAKVDTAITVALTVVKEHFPVV
ERQGGVSYAIVFRARLNNSAKRDAYIDAIAAAIHAYEPRYKVDLTKPDVV
LIVEVMKTSCCIGTFRKYYQLAKLNLREAACPSNPKQTKKERATKEKDEN
VGKVANRATDQVAGQTESKVTATDSTEIADGAPTESINEAANVSSEDVAN
NATNKLAPEISNEADNKAANEDEPKAVNDSAPKACDRVGSKVANQVAPQI
GDEVANKVPEECVYASKKTKESEQKSESADEGEASKAISMEGTVEEDDEE
AAAK*
back to top

spliced messenger RNA

>Gchil5738.t1 ID=Gchil5738.t1|Name=Gchil5738.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000015_pilon:1234435..1235799- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCAACGCTGCCGCAGAAGCGGGACGCCCCCAAAAATGCCGCACT
GTCCTCTCGAGCGCGACGGAAGAAGTTTCGCACGGTGGGCGTCCATACTG
TTCGACGCGCCGATCTCAGTCAGGCGCAATGTGGCGTGCTTGTGGGCTGC
ACCCCGGGCCACGAGCATCATGCTTTCCGTGACGCCGTCGTACTTCTGTC
CCGTTTCGTCAAGGAGGCGTGCGCGGGTGGCGGTGAGGCCCCGAGGCATG
CAGGCCGCGACGGCGATGAGGGTGAGCACAAGGGCGACGGCGACAGCAAG
GCGAGTACCGGTGGTGATCCACTAGAAAAAGAGTTGGACGACTTGCGAAG
AGGGGGTAGTGACAAAGTGTTCACCCGTGTCGTGGCCGACGTGAAAGGCG
CCGTATTCCTTCGCGTCAATGATCAGAAAGCCGATCTGGAGCAAGTAGTG
GAACGCGCGTTGCTCGAAGCACGACAGACTGGCAATGCTGGTTCTCGCCA
TTGTATCCGAGTGCTCCCTATATATGGCACGTGCTACGCGAAGGTCGACA
CGGCCATTACCGTGGCTTTGACCGTCGTCAAAGAGCACTTTCCCGTCGTG
GAGCGGCAGGGAGGTGTGTCATATGCTATTGTGTTCCGCGCAAGACTCAA
CAATTCTGCGAAAAGGGATGCATATATCGATGCCATTGCGGCCGCTATTC
ATGCGTATGAACCGCGCTATAAAGTAGATTTGACAAAGCCGGATGTGGTG
CTGATTGTAGAAGTTATGAAGACCAGTTGTTGTATCGGAACGTTTCGAAA
GTACTACCAGCTGGCAAAACTGAATCTCAGGGAGGCTGCTTGTCCTTCCA
ATCCAAAACAAACGAAAAAAGAGAGGGCCACAAAAGAGAAAGACGAAAAT
GTTGGCAAAGTTGCAAACCGAGCTACGGATCAAGTTGCTGGCCAAACTGA
GAGCAAAGTGACGGCTACGGACTCCACTGAAATTGCTGATGGAGCCCCAA
CTGAAAGTATAAATGAAGCTGCAAACGTTTCCAGTGAGGACGTAGCTAAC
AACGCTACCAATAAACTTGCTCCCGAAATTTCCAATGAAGCGGACAACAA
GGCTGCCAATGAGGATGAACCGAAAGCTGTAAATGACTCTGCACCTAAAG
CTTGCGACCGAGTCGGGAGCAAAGTCGCCAATCAAGTTGCCCCTCAAATT
GGAGATGAAGTCGCAAACAAAGTCCCGGAAGAATGTGTCTACGCGAGTAA
GAAAACGAAAGAATCGGAACAGAAATCAGAGTCTGCTGACGAAGGGGAAG
CCTCGAAGGCAATCTCGATGGAAGGAACAGTAGAAGAAGATGACGAGGAA
GCTGCAGCCAAGTAG
back to top

protein sequence of Gchil5738.t1

>Gchil5738.t1 ID=Gchil5738.t1|Name=Gchil5738.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=455bp
MDATLPQKRDAPKNAALSSRARRKKFRTVGVHTVRRADLSQAQCGVLVGC
TPGHEHHAFRDAVVLLSRFVKEACAGGGEAPRHAGRDGDEGEHKGDGDSK
ASTGGDPLEKELDDLRRGGSDKVFTRVVADVKGAVFLRVNDQKADLEQVV
ERALLEARQTGNAGSRHCIRVLPIYGTCYAKVDTAITVALTVVKEHFPVV
ERQGGVSYAIVFRARLNNSAKRDAYIDAIAAAIHAYEPRYKVDLTKPDVV
LIVEVMKTSCCIGTFRKYYQLAKLNLREAACPSNPKQTKKERATKEKDEN
VGKVANRATDQVAGQTESKVTATDSTEIADGAPTESINEAANVSSEDVAN
NATNKLAPEISNEADNKAANEDEPKAVNDSAPKACDRVGSKVANQVAPQI
GDEVANKVPEECVYASKKTKESEQKSESADEGEASKAISMEGTVEEDDEE
AAAK*
back to top

mRNA from alignment at tig00000015_pilon:1234435..1235799-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5738.t1 ID=Gchil5738.t1|Name=Gchil5738.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000015_pilon:1234435..1235799- (Gracilaria chilensis NLEC103_M9 male)
ATGGATGCAACGCTGCCGCAGAAGCGGGACGCCCCCAAAAATGCCGCACT
GTCCTCTCGAGCGCGACGGAAGAAGTTTCGCACGGTGGGCGTCCATACTG
TTCGACGCGCCGATCTCAGTCAGGCGCAATGTGGCGTGCTTGTGGGCTGC
ACCCCGGGCCACGAGCATCATGCTTTCCGTGACGCCGTCGTACTTCTGTC
CCGTTTCGTCAAGGAGGCGTGCGCGGGTGGCGGTGAGGCCCCGAGGCATG
CAGGCCGCGACGGCGATGAGGGTGAGCACAAGGGCGACGGCGACAGCAAG
GCGAGTACCGGTGGTGATCCACTAGAAAAAGAGTTGGACGACTTGCGAAG
AGGGGGTAGTGACAAAGTGTTCACCCGTGTCGTGGCCGACGTGAAAGGCG
CCGTATTCCTTCGCGTCAATGATCAGAAAGCCGATCTGGAGCAAGTAGTG
GAACGCGCGTTGCTCGAAGCACGACAGACTGGCAATGCTGGTTCTCGCCA
TTGTATCCGAGTGCTCCCTATATATGGCACGTGCTACGCGAAGGTCGACA
CGGCCATTACCGTGGCTTTGACCGTCGTCAAAGAGCACTTTCCCGTCGTG
GAGCGGCAGGGAGGTGTGTCATATGCTATTGTGTTCCGCGCAAGACTCAA
CAATTCTGCGAAAAGGGATGCATATATCGATGCCATTGCGGCCGCTATTC
ATGCGTATGAACCGCGCTATAAAGTAGATTTGACAAAGCCGGATGTGGTG
CTGATTGTAGAAGTTATGAAGACCAGTTGTTGTATCGGAACGTTTCGAAA
GTACTACCAGCTGGCAAAACTGAATCTCAGGGAGGCTGCTTGTCCTTCCA
ATCCAAAACAAACGAAAAAAGAGAGGGCCACAAAAGAGAAAGACGAAAAT
GTTGGCAAAGTTGCAAACCGAGCTACGGATCAAGTTGCTGGCCAAACTGA
GAGCAAAGTGACGGCTACGGACTCCACTGAAATTGCTGATGGAGCCCCAA
CTGAAAGTATAAATGAAGCTGCAAACGTTTCCAGTGAGGACGTAGCTAAC
AACGCTACCAATAAACTTGCTCCCGAAATTTCCAATGAAGCGGACAACAA
GGCTGCCAATGAGGATGAACCGAAAGCTGTAAATGACTCTGCACCTAAAG
CTTGCGACCGAGTCGGGAGCAAAGTCGCCAATCAAGTTGCCCCTCAAATT
GGAGATGAAGTCGCAAACAAAGTCCCGGAAGAATGTGTCTACGCGAGTAA
GAAAACGAAAGAATCGGAACAGAAATCAGAGTCTGCTGACGAAGGGGAAG
CCTCGAAGGCAATCTCGATGGAAGGAACAGTAGAAGAAGATGACGAGGAA
GCTGCAGCCAAGTAG
back to top

Coding sequence (CDS) from alignment at tig00000015_pilon:1234435..1235799-

>Gchil5738.t1 ID=Gchil5738.t1|Name=Gchil5738.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1365bp|location=Sequence derived from alignment at tig00000015_pilon:1234435..1235799- (Gracilaria chilensis NLEC103_M9 male)
ATGGATGCAACGCTGCCGCAGAAGCGGGACGCCCCCAAAAATGCCGCACT
GTCCTCTCGAGCGCGACGGAAGAAGTTTCGCACGGTGGGCGTCCATACTG
TTCGACGCGCCGATCTCAGTCAGGCGCAATGTGGCGTGCTTGTGGGCTGC
ACCCCGGGCCACGAGCATCATGCTTTCCGTGACGCCGTCGTACTTCTGTC
CCGTTTCGTCAAGGAGGCGTGCGCGGGTGGCGGTGAGGCCCCGAGGCATG
CAGGCCGCGACGGCGATGAGGGTGAGCACAAGGGCGACGGCGACAGCAAG
GCGAGTACCGGTGGTGATCCACTAGAAAAAGAGTTGGACGACTTGCGAAG
AGGGGGTAGTGACAAAGTGTTCACCCGTGTCGTGGCCGACGTGAAAGGCG
CCGTATTCCTTCGCGTCAATGATCAGAAAGCCGATCTGGAGCAAGTAGTG
GAACGCGCGTTGCTCGAAGCACGACAGACTGGCAATGCTGGTTCTCGCCA
TTGTATCCGAGTGCTCCCTATATATGGCACGTGCTACGCGAAGGTCGACA
CGGCCATTACCGTGGCTTTGACCGTCGTCAAAGAGCACTTTCCCGTCGTG
GAGCGGCAGGGAGGTGTGTCATATGCTATTGTGTTCCGCGCAAGACTCAA
CAATTCTGCGAAAAGGGATGCATATATCGATGCCATTGCGGCCGCTATTC
ATGCGTATGAACCGCGCTATAAAGTAGATTTGACAAAGCCGGATGTGGTG
CTGATTGTAGAAGTTATGAAGACCAGTTGTTGTATCGGAACGTTTCGAAA
GTACTACCAGCTGGCAAAACTGAATCTCAGGGAGGCTGCTTGTCCTTCCA
ATCCAAAACAAACGAAAAAAGAGAGGGCCACAAAAGAGAAAGACGAAAAT
GTTGGCAAAGTTGCAAACCGAGCTACGGATCAAGTTGCTGGCCAAACTGA
GAGCAAAGTGACGGCTACGGACTCCACTGAAATTGCTGATGGAGCCCCAA
CTGAAAGTATAAATGAAGCTGCAAACGTTTCCAGTGAGGACGTAGCTAAC
AACGCTACCAATAAACTTGCTCCCGAAATTTCCAATGAAGCGGACAACAA
GGCTGCCAATGAGGATGAACCGAAAGCTGTAAATGACTCTGCACCTAAAG
CTTGCGACCGAGTCGGGAGCAAAGTCGCCAATCAAGTTGCCCCTCAAATT
GGAGATGAAGTCGCAAACAAAGTCCCGGAAGAATGTGTCTACGCGAGTAA
GAAAACGAAAGAATCGGAACAGAAATCAGAGTCTGCTGACGAAGGGGAAG
CCTCGAAGGCAATCTCGATGGAAGGAACAGTAGAAGAAGATGACGAGGAA
GCTGCAGCCAAGTAG
back to top