Gchil2837.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2837.t1
Unique NameGchil2837.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length86
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:867263..867696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2837Gchil2837Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 867263..867696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2837.t1Gchil2837.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 867263..867696 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2837.t1.stop1Gchil2837.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 867263..867265 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2837.t1.CDS1Gchil2837.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 867263..867365 -
Gchil2837.t1.CDS2Gchil2837.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 867468..867565 -
Gchil2837.t1.CDS3Gchil2837.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 867640..867696 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2837.t1.exon1Gchil2837.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 867263..867365 -
Gchil2837.t1.exon2Gchil2837.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 867468..867565 -
Gchil2837.t1.exon3Gchil2837.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 867640..867696 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2837.t1.intron1Gchil2837.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 867366..867467 -
Gchil2837.t1.intron2Gchil2837.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 867566..867639 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2837.t1.start1Gchil2837.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 867694..867696 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2837.t1 ID=Gchil2837.t1|Name=Gchil2837.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=86bp
MSGAASKNDKADGKPSASKPKRRAQPGDFEKQVDRIQHDIDKIRANLAAA
EKALQICTTAESPLAHPEGQLDKQSDHDDAADQQP*
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spliced messenger RNA

>Gchil2837.t1 ID=Gchil2837.t1|Name=Gchil2837.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=258bp|location=Sequence derived from alignment at tig00004406_pilon:867263..867696- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGCGCTGCGTCCAAAAACGACAAAGCCGACGGCAAACCCTCAGC
GAGCAAGCCCAAACGGCGCGCGCAACCTGGCGACTTCGAGAAACAGGTGG
ACCGTATTCAACACGACATTGACAAAATTCGCGCCAACCTCGCAGCCGCT
GAAAAAGCGTTGCAGATTTGCACTACCGCCGAGTCTCCGCTCGCCCATCC
GGAGGGGCAACTGGACAAGCAAAGCGATCACGATGACGCTGCCGACCAAC
AGCCGTAA
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protein sequence of Gchil2837.t1

>Gchil2837.t1 ID=Gchil2837.t1|Name=Gchil2837.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=86bp
MSGAASKNDKADGKPSASKPKRRAQPGDFEKQVDRIQHDIDKIRANLAAA
EKALQICTTAESPLAHPEGQLDKQSDHDDAADQQP*
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mRNA from alignment at tig00004406_pilon:867263..867696-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2837.t1 ID=Gchil2837.t1|Name=Gchil2837.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=434bp|location=Sequence derived from alignment at tig00004406_pilon:867263..867696- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGGCGCTGCGTCCAAAAACGACAAAGCCGACGGCAAACCCTCAGC
GAGCAAGGTACGTGCTACCTGCCCACCAACTCACATCTTGCCAACAAGTA
CTGACGCCTTGCCCATCGTCTGAGTTTGTAGCCCAAACGGCGCGCGCAAC
CTGGCGACTTCGAGAAACAGGTGGACCGTATTCAACACGACATTGACAAA
ATTCGCGCCAACCTCGCAGCCGCTGAAAAGTAAGATTCGCACCCGCTTTC
GCTCCTTCTTTCCTCCCCTGCCCATTACCTAGCTCACACATGTGCTTCTT
TCTTTTCTGTGCTTCTTTTGCTGCTTTGTAGAGCGTTGCAGATTTGCACT
ACCGCCGAGTCTCCGCTCGCCCATCCGGAGGGGCAACTGGACAAGCAAAG
CGATCACGATGACGCTGCCGACCAACAGCCGTAA
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Coding sequence (CDS) from alignment at tig00004406_pilon:867263..867696-

>Gchil2837.t1 ID=Gchil2837.t1|Name=Gchil2837.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=258bp|location=Sequence derived from alignment at tig00004406_pilon:867263..867696- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGGCGCTGCGTCCAAAAACGACAAAGCCGACGGCAAACCCTCAGC
GAGCAAGCCCAAACGGCGCGCGCAACCTGGCGACTTCGAGAAACAGGTGG
ACCGTATTCAACACGACATTGACAAAATTCGCGCCAACCTCGCAGCCGCT
GAAAAAGCGTTGCAGATTTGCACTACCGCCGAGTCTCCGCTCGCCCATCC
GGAGGGGCAACTGGACAAGCAAAGCGATCACGATGACGCTGCCGACCAAC
AGCCGTAA
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