Gchil1552.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1552.t1
Unique Name	Gchil1552.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	578

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:844974..846707 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMP169CT
PFAMs	NCA2
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K18158
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0016020,GO:0019867,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
Evalue	1.75e-11
EggNOG OGs	28M9W@1\|root,2QQIS@2759\|Eukaryota
Description	Nuclear control of ATPase protein
COG category	S
BRITE	ko00000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1552	Gchil1552	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 844974..846707 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1552.t1.stop1	Gchil1552.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 844974..844976 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1552.t1.CDS1	Gchil1552.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 844974..846707 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1552.t1.exon1	Gchil1552.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 844974..846707 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1552.t1.start1	Gchil1552.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 846705..846707 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1552.t1	Gchil1552.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 844974..846707 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:844974..846707-
coding sequence from alignment at tig00004403_pilon:844974..846707-

mRNA sequence

>Gchil1552.t1 ID=Gchil1552.t1|Name=Gchil1552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=578bp
MDLLPQLSVVLKKLLFPNTGFTQRRKPSIAFEINNSQSAQHLLRILSERT
DDIVADNQALAYLRLRSSQYLLEYIVTIVQRLESYSLYYRTESESLRKSL
SGMLFRYSFSSSALSRAQYNDEIRNLIEQIVYSICQFIGLHLQTGHAIRL
ALREGRQDDLARAIVTSCRQVSSFHHAIAQANSAIKIPQHIQEVVRTSIS
ATRKDISEQSHIAGQLGQFWNQNLSTSAKRFGAHDVRLTVQIIQRELSDT
RNTLGRLSRLCERDVAKPYDVRRRPYRYGGLAIITGFSANYLSHNAGFLG
GSGALEATVVHCGHVFRGFVDNNVLAPVTRFYKQIFRTSTVTSDEKSVSD
SRMILQDMLSEFTKTHLKHVTGAGDMAQVGDFKAVTKLILEQARHPFKNT
VIGSLPQAMLLQVQKLKCDVEELMLKSMQLLRAQELNLALVALAPSLLTI
ASVIQICSTLAFQLRGRNAGMIVSGGQTARFLLGDIHSAFLAIEAEEGAD
ARQVENILRHMKHIGMIHVKVVEIFNLIELGIIAAPKKVIFRFTDDLELL
RSADEHINQRRMHVDRMLRCYSFLQTM*

spliced messenger RNA

>Gchil1552.t1 ID=Gchil1552.t1|Name=Gchil1552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at tig00004403_pilon:844974..846707- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCTTCTTCCTCAGCTCTCTGTTGTGTTAAAGAAACTTTTGTTTCC
AAATACTGGATTCACCCAACGACGAAAACCTTCGATTGCTTTCGAGATCA
ACAATTCCCAATCTGCCCAACACCTGCTTCGAATTCTCTCAGAGCGAACC
GATGACATTGTGGCCGATAATCAGGCGTTGGCTTATCTACGATTGCGAAG
CAGTCAGTATCTTCTAGAGTATATTGTTACCATTGTTCAACGACTTGAAT
CATATTCCCTTTACTATCGAACCGAGTCGGAATCACTTCGCAAATCGCTC
AGCGGCATGCTTTTTCGCTATTCGTTCTCATCATCCGCCCTATCGAGAGC
GCAGTACAATGATGAGATTCGAAACCTTATTGAACAAATTGTGTATTCAA
TATGTCAATTCATCGGCTTGCATTTGCAAACAGGCCATGCTATCCGCCTT
GCTTTGAGAGAAGGTCGTCAGGACGATCTCGCTCGTGCCATTGTAACTTC
ATGTCGGCAGGTGAGTTCTTTCCATCACGCAATAGCCCAAGCCAATTCTG
CCATCAAAATACCGCAACATATACAAGAGGTTGTGAGAACATCCATCTCT
GCAACACGCAAGGATATATCAGAGCAGTCACATATCGCCGGCCAACTAGG
CCAGTTTTGGAATCAGAACCTGTCCACAAGCGCAAAACGCTTCGGAGCCC
ATGATGTTCGACTCACGGTTCAAATAATTCAGCGTGAACTATCCGATACG
CGGAATACACTAGGACGGCTGAGTCGCCTGTGTGAAAGGGACGTAGCGAA
GCCATACGATGTTAGAAGACGACCGTACCGGTACGGAGGTTTGGCTATCA
TCACAGGATTCTCAGCAAACTATTTGTCCCATAACGCCGGTTTTCTCGGG
GGAAGTGGTGCTTTAGAAGCGACTGTGGTACACTGCGGACACGTCTTTCG
CGGCTTCGTTGATAATAACGTTCTTGCTCCTGTTACGCGATTCTACAAGC
AAATTTTTCGCACTTCAACAGTCACTTCTGATGAGAAGTCAGTTTCAGAC
TCACGTATGATTCTTCAAGATATGCTTTCCGAGTTTACAAAAACACACTT
GAAACATGTTACTGGGGCAGGCGATATGGCACAGGTTGGTGACTTCAAGG
CCGTTACGAAGCTGATCCTAGAACAAGCGCGCCATCCGTTTAAAAACACT
GTGATCGGTAGTCTTCCACAAGCGATGCTCCTGCAAGTTCAAAAGCTGAA
ATGTGATGTTGAGGAATTGATGTTGAAGAGCATGCAGCTTCTTCGCGCAC
AAGAACTCAATCTTGCTCTGGTGGCCCTTGCTCCTTCCCTACTCACAATA
GCTTCAGTAATTCAGATATGTTCCACACTTGCATTTCAACTGCGCGGTAG
AAACGCCGGGATGATTGTATCGGGGGGTCAAACAGCACGCTTTCTTCTCG
GTGACATTCATTCCGCCTTTCTGGCCATCGAAGCCGAAGAAGGAGCAGAT
GCACGCCAAGTAGAAAACATTTTGCGGCACATGAAGCACATCGGTATGAT
TCACGTTAAAGTTGTTGAAATATTCAATCTGATAGAACTCGGGATCATCG
CGGCGCCCAAAAAGGTCATTTTTCGTTTTACAGATGATCTCGAGTTATTG
CGATCGGCTGATGAACATATTAATCAAAGAAGGATGCATGTGGACAGGAT
GCTTAGATGTTATTCATTTCTCCAGACGATGTAA

protein sequence of Gchil1552.t1

>Gchil1552.t1 ID=Gchil1552.t1|Name=Gchil1552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=578bp
MDLLPQLSVVLKKLLFPNTGFTQRRKPSIAFEINNSQSAQHLLRILSERT
DDIVADNQALAYLRLRSSQYLLEYIVTIVQRLESYSLYYRTESESLRKSL
SGMLFRYSFSSSALSRAQYNDEIRNLIEQIVYSICQFIGLHLQTGHAIRL
ALREGRQDDLARAIVTSCRQVSSFHHAIAQANSAIKIPQHIQEVVRTSIS
ATRKDISEQSHIAGQLGQFWNQNLSTSAKRFGAHDVRLTVQIIQRELSDT
RNTLGRLSRLCERDVAKPYDVRRRPYRYGGLAIITGFSANYLSHNAGFLG
GSGALEATVVHCGHVFRGFVDNNVLAPVTRFYKQIFRTSTVTSDEKSVSD
SRMILQDMLSEFTKTHLKHVTGAGDMAQVGDFKAVTKLILEQARHPFKNT
VIGSLPQAMLLQVQKLKCDVEELMLKSMQLLRAQELNLALVALAPSLLTI
ASVIQICSTLAFQLRGRNAGMIVSGGQTARFLLGDIHSAFLAIEAEEGAD
ARQVENILRHMKHIGMIHVKVVEIFNLIELGIIAAPKKVIFRFTDDLELL
RSADEHINQRRMHVDRMLRCYSFLQTM*

mRNA from alignment at tig00004403_pilon:844974..846707-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1552.t1 ID=Gchil1552.t1|Name=Gchil1552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at tig00004403_pilon:844974..846707- (Gracilaria chilensis NLEC103_M9 male)
ATGGATCTTCTTCCTCAGCTCTCTGTTGTGTTAAAGAAACTTTTGTTTCC
AAATACTGGATTCACCCAACGACGAAAACCTTCGATTGCTTTCGAGATCA
ACAATTCCCAATCTGCCCAACACCTGCTTCGAATTCTCTCAGAGCGAACC
GATGACATTGTGGCCGATAATCAGGCGTTGGCTTATCTACGATTGCGAAG
CAGTCAGTATCTTCTAGAGTATATTGTTACCATTGTTCAACGACTTGAAT
CATATTCCCTTTACTATCGAACCGAGTCGGAATCACTTCGCAAATCGCTC
AGCGGCATGCTTTTTCGCTATTCGTTCTCATCATCCGCCCTATCGAGAGC
GCAGTACAATGATGAGATTCGAAACCTTATTGAACAAATTGTGTATTCAA
TATGTCAATTCATCGGCTTGCATTTGCAAACAGGCCATGCTATCCGCCTT
GCTTTGAGAGAAGGTCGTCAGGACGATCTCGCTCGTGCCATTGTAACTTC
ATGTCGGCAGGTGAGTTCTTTCCATCACGCAATAGCCCAAGCCAATTCTG
CCATCAAAATACCGCAACATATACAAGAGGTTGTGAGAACATCCATCTCT
GCAACACGCAAGGATATATCAGAGCAGTCACATATCGCCGGCCAACTAGG
CCAGTTTTGGAATCAGAACCTGTCCACAAGCGCAAAACGCTTCGGAGCCC
ATGATGTTCGACTCACGGTTCAAATAATTCAGCGTGAACTATCCGATACG
CGGAATACACTAGGACGGCTGAGTCGCCTGTGTGAAAGGGACGTAGCGAA
GCCATACGATGTTAGAAGACGACCGTACCGGTACGGAGGTTTGGCTATCA
TCACAGGATTCTCAGCAAACTATTTGTCCCATAACGCCGGTTTTCTCGGG
GGAAGTGGTGCTTTAGAAGCGACTGTGGTACACTGCGGACACGTCTTTCG
CGGCTTCGTTGATAATAACGTTCTTGCTCCTGTTACGCGATTCTACAAGC
AAATTTTTCGCACTTCAACAGTCACTTCTGATGAGAAGTCAGTTTCAGAC
TCACGTATGATTCTTCAAGATATGCTTTCCGAGTTTACAAAAACACACTT
GAAACATGTTACTGGGGCAGGCGATATGGCACAGGTTGGTGACTTCAAGG
CCGTTACGAAGCTGATCCTAGAACAAGCGCGCCATCCGTTTAAAAACACT
GTGATCGGTAGTCTTCCACAAGCGATGCTCCTGCAAGTTCAAAAGCTGAA
ATGTGATGTTGAGGAATTGATGTTGAAGAGCATGCAGCTTCTTCGCGCAC
AAGAACTCAATCTTGCTCTGGTGGCCCTTGCTCCTTCCCTACTCACAATA
GCTTCAGTAATTCAGATATGTTCCACACTTGCATTTCAACTGCGCGGTAG
AAACGCCGGGATGATTGTATCGGGGGGTCAAACAGCACGCTTTCTTCTCG
GTGACATTCATTCCGCCTTTCTGGCCATCGAAGCCGAAGAAGGAGCAGAT
GCACGCCAAGTAGAAAACATTTTGCGGCACATGAAGCACATCGGTATGAT
TCACGTTAAAGTTGTTGAAATATTCAATCTGATAGAACTCGGGATCATCG
CGGCGCCCAAAAAGGTCATTTTTCGTTTTACAGATGATCTCGAGTTATTG
CGATCGGCTGATGAACATATTAATCAAAGAAGGATGCATGTGGACAGGAT
GCTTAGATGTTATTCATTTCTCCAGACGATGTAA

Coding sequence (CDS) from alignment at tig00004403_pilon:844974..846707-

>Gchil1552.t1 ID=Gchil1552.t1|Name=Gchil1552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1734bp|location=Sequence derived from alignment at tig00004403_pilon:844974..846707- (Gracilaria chilensis NLEC103_M9 male)
ATGGATCTTCTTCCTCAGCTCTCTGTTGTGTTAAAGAAACTTTTGTTTCC
AAATACTGGATTCACCCAACGACGAAAACCTTCGATTGCTTTCGAGATCA
ACAATTCCCAATCTGCCCAACACCTGCTTCGAATTCTCTCAGAGCGAACC
GATGACATTGTGGCCGATAATCAGGCGTTGGCTTATCTACGATTGCGAAG
CAGTCAGTATCTTCTAGAGTATATTGTTACCATTGTTCAACGACTTGAAT
CATATTCCCTTTACTATCGAACCGAGTCGGAATCACTTCGCAAATCGCTC
AGCGGCATGCTTTTTCGCTATTCGTTCTCATCATCCGCCCTATCGAGAGC
GCAGTACAATGATGAGATTCGAAACCTTATTGAACAAATTGTGTATTCAA
TATGTCAATTCATCGGCTTGCATTTGCAAACAGGCCATGCTATCCGCCTT
GCTTTGAGAGAAGGTCGTCAGGACGATCTCGCTCGTGCCATTGTAACTTC
ATGTCGGCAGGTGAGTTCTTTCCATCACGCAATAGCCCAAGCCAATTCTG
CCATCAAAATACCGCAACATATACAAGAGGTTGTGAGAACATCCATCTCT
GCAACACGCAAGGATATATCAGAGCAGTCACATATCGCCGGCCAACTAGG
CCAGTTTTGGAATCAGAACCTGTCCACAAGCGCAAAACGCTTCGGAGCCC
ATGATGTTCGACTCACGGTTCAAATAATTCAGCGTGAACTATCCGATACG
CGGAATACACTAGGACGGCTGAGTCGCCTGTGTGAAAGGGACGTAGCGAA
GCCATACGATGTTAGAAGACGACCGTACCGGTACGGAGGTTTGGCTATCA
TCACAGGATTCTCAGCAAACTATTTGTCCCATAACGCCGGTTTTCTCGGG
GGAAGTGGTGCTTTAGAAGCGACTGTGGTACACTGCGGACACGTCTTTCG
CGGCTTCGTTGATAATAACGTTCTTGCTCCTGTTACGCGATTCTACAAGC
AAATTTTTCGCACTTCAACAGTCACTTCTGATGAGAAGTCAGTTTCAGAC
TCACGTATGATTCTTCAAGATATGCTTTCCGAGTTTACAAAAACACACTT
GAAACATGTTACTGGGGCAGGCGATATGGCACAGGTTGGTGACTTCAAGG
CCGTTACGAAGCTGATCCTAGAACAAGCGCGCCATCCGTTTAAAAACACT
GTGATCGGTAGTCTTCCACAAGCGATGCTCCTGCAAGTTCAAAAGCTGAA
ATGTGATGTTGAGGAATTGATGTTGAAGAGCATGCAGCTTCTTCGCGCAC
AAGAACTCAATCTTGCTCTGGTGGCCCTTGCTCCTTCCCTACTCACAATA
GCTTCAGTAATTCAGATATGTTCCACACTTGCATTTCAACTGCGCGGTAG
AAACGCCGGGATGATTGTATCGGGGGGTCAAACAGCACGCTTTCTTCTCG
GTGACATTCATTCCGCCTTTCTGGCCATCGAAGCCGAAGAAGGAGCAGAT
GCACGCCAAGTAGAAAACATTTTGCGGCACATGAAGCACATCGGTATGAT
TCACGTTAAAGTTGTTGAAATATTCAATCTGATAGAACTCGGGATCATCG
CGGCGCCCAAAAAGGTCATTTTTCGTTTTACAGATGATCTCGAGTTATTG
CGATCGGCTGATGAACATATTAATCAAAGAAGGATGCATGTGGACAGGAT
GCTTAGATGTTATTCATTTCTCCAGACGATGTAA