Gchil1585.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1585.t1
Unique NameGchil1585.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1071485..1072168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1395516.PMO01_08750
PFAMsHAD_2
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00017
KEGG koko:K17623
KEGG ReactionR11180
Evalue5.6e-48
EggNOG OGsCOG0637@1|root,COG0637@2|Bacteria,1PEFG@1224|Proteobacteria,1SFAI@1236|Gammaproteobacteria
EC3.1.3.96
DescriptionHAD family hydrolase
COG categoryS
BRITEko00000,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1585Gchil1585Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1071485..1072168 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1585.t1.stop1Gchil1585.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1071485..1071487 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1585.t1.CDS1Gchil1585.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1071485..1072168 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1585.t1.exon1Gchil1585.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1071485..1072168 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1585.t1.start1Gchil1585.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1072166..1072168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1585.t1Gchil1585.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1071485..1072168 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1585.t1 ID=Gchil1585.t1|Name=Gchil1585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=228bp
MKSVIWDMDGVLLDTEPIYMRVEQQIVSRYGKQMHPILPQLLGRTADVCA
KITVQQLQLPLTPDQFLAERNAHLLRLMPSAQLLPGVDAVVRHLNTHGVK
MAIATSSPRDLLIAKRSGKEPFFALFDAVVCGDDVSEGKPNPHIFLKAAQ
AIRQHPSDCYVFEDAPAGLKAARLAGMKAVALPNPHVDIKLYQMEDPLCI
VPSASLLDFDISSLGFPPITQHPTPPP*
back to top

spliced messenger RNA

>Gchil1585.t1 ID=Gchil1585.t1|Name=Gchil1585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00004403_pilon:1071485..1072168- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGCGTCATTTGGGACATGGACGGCGTGCTACTCGACACCGAGCC
CATCTACATGCGCGTCGAGCAGCAGATCGTGTCGCGCTACGGCAAGCAAA
TGCACCCCATCCTCCCGCAGTTGCTGGGTCGTACTGCCGACGTTTGCGCC
AAAATCACCGTGCAACAGCTCCAGCTGCCGCTCACTCCCGACCAATTTCT
CGCTGAGCGCAATGCTCATTTGCTGCGTCTCATGCCCAGTGCGCAGCTTC
TGCCGGGCGTTGACGCCGTCGTGCGTCACCTCAACACACATGGCGTCAAG
ATGGCCATTGCTACCTCGTCGCCGCGCGACCTGCTCATCGCAAAGCGCTC
CGGAAAGGAGCCCTTTTTCGCACTCTTTGACGCCGTCGTGTGCGGCGACG
ACGTGAGCGAGGGCAAGCCCAACCCGCACATCTTTTTAAAGGCTGCACAA
GCTATTCGTCAGCATCCCTCCGACTGCTATGTCTTTGAGGATGCCCCTGC
CGGGCTCAAGGCCGCCCGCCTGGCCGGTATGAAGGCCGTTGCCTTGCCCA
ACCCGCACGTCGATATCAAGCTTTATCAAATGGAGGACCCACTCTGTATT
GTGCCCTCTGCTTCTCTGCTCGACTTTGACATTTCTAGTCTTGGCTTCCC
GCCCATCACTCAACACCCCACACCTCCGCCTTGA
back to top

protein sequence of Gchil1585.t1

>Gchil1585.t1 ID=Gchil1585.t1|Name=Gchil1585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=228bp
MKSVIWDMDGVLLDTEPIYMRVEQQIVSRYGKQMHPILPQLLGRTADVCA
KITVQQLQLPLTPDQFLAERNAHLLRLMPSAQLLPGVDAVVRHLNTHGVK
MAIATSSPRDLLIAKRSGKEPFFALFDAVVCGDDVSEGKPNPHIFLKAAQ
AIRQHPSDCYVFEDAPAGLKAARLAGMKAVALPNPHVDIKLYQMEDPLCI
VPSASLLDFDISSLGFPPITQHPTPPP*
back to top

mRNA from alignment at tig00004403_pilon:1071485..1072168-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1585.t1 ID=Gchil1585.t1|Name=Gchil1585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00004403_pilon:1071485..1072168- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAGCGTCATTTGGGACATGGACGGCGTGCTACTCGACACCGAGCC
CATCTACATGCGCGTCGAGCAGCAGATCGTGTCGCGCTACGGCAAGCAAA
TGCACCCCATCCTCCCGCAGTTGCTGGGTCGTACTGCCGACGTTTGCGCC
AAAATCACCGTGCAACAGCTCCAGCTGCCGCTCACTCCCGACCAATTTCT
CGCTGAGCGCAATGCTCATTTGCTGCGTCTCATGCCCAGTGCGCAGCTTC
TGCCGGGCGTTGACGCCGTCGTGCGTCACCTCAACACACATGGCGTCAAG
ATGGCCATTGCTACCTCGTCGCCGCGCGACCTGCTCATCGCAAAGCGCTC
CGGAAAGGAGCCCTTTTTCGCACTCTTTGACGCCGTCGTGTGCGGCGACG
ACGTGAGCGAGGGCAAGCCCAACCCGCACATCTTTTTAAAGGCTGCACAA
GCTATTCGTCAGCATCCCTCCGACTGCTATGTCTTTGAGGATGCCCCTGC
CGGGCTCAAGGCCGCCCGCCTGGCCGGTATGAAGGCCGTTGCCTTGCCCA
ACCCGCACGTCGATATCAAGCTTTATCAAATGGAGGACCCACTCTGTATT
GTGCCCTCTGCTTCTCTGCTCGACTTTGACATTTCTAGTCTTGGCTTCCC
GCCCATCACTCAACACCCCACACCTCCGCCTTGA
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:1071485..1072168-

>Gchil1585.t1 ID=Gchil1585.t1|Name=Gchil1585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=684bp|location=Sequence derived from alignment at tig00004403_pilon:1071485..1072168- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAGCGTCATTTGGGACATGGACGGCGTGCTACTCGACACCGAGCC
CATCTACATGCGCGTCGAGCAGCAGATCGTGTCGCGCTACGGCAAGCAAA
TGCACCCCATCCTCCCGCAGTTGCTGGGTCGTACTGCCGACGTTTGCGCC
AAAATCACCGTGCAACAGCTCCAGCTGCCGCTCACTCCCGACCAATTTCT
CGCTGAGCGCAATGCTCATTTGCTGCGTCTCATGCCCAGTGCGCAGCTTC
TGCCGGGCGTTGACGCCGTCGTGCGTCACCTCAACACACATGGCGTCAAG
ATGGCCATTGCTACCTCGTCGCCGCGCGACCTGCTCATCGCAAAGCGCTC
CGGAAAGGAGCCCTTTTTCGCACTCTTTGACGCCGTCGTGTGCGGCGACG
ACGTGAGCGAGGGCAAGCCCAACCCGCACATCTTTTTAAAGGCTGCACAA
GCTATTCGTCAGCATCCCTCCGACTGCTATGTCTTTGAGGATGCCCCTGC
CGGGCTCAAGGCCGCCCGCCTGGCCGGTATGAAGGCCGTTGCCTTGCCCA
ACCCGCACGTCGATATCAAGCTTTATCAAATGGAGGACCCACTCTGTATT
GTGCCCTCTGCTTCTCTGCTCGACTTTGACATTTCTAGTCTTGGCTTCCC
GCCCATCACTCAACACCCCACACCTCCGCCTTGA
back to top