Gchil1574.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1574.t1
Unique Name	Gchil1574.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	586

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:988932..990689 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4558.Sb03g028080.1
PFAMs	PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00408
KEGG ko	ko:K01835
KEGG Reaction	R00959,R01057,R08639
KEGG Pathway	ko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130
KEGG Module	M00549
GOs	GO:0000271,GO:0003674,GO:0003824,GO:0004614,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0005982,GO:0005996,GO:0006006,GO:0006012,GO:0006073,GO:0006091,GO:0006112,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009250,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009581,GO:0009582,GO:0009590,GO:0009605,GO:0009628,GO:0009629,GO:0009941,GO:0009987,GO:0010319,GO:0015980,GO:0016051,GO:0016052,GO:0016853,GO:0016866,GO:0016868,GO:0019252,GO:0019318,GO:0019320,GO:0019388,GO:0031967,GO:0031975,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046365,GO:0048046,GO:0050896,GO:0051606,GO:0055114,GO:0071704,GO:1901575,GO:1901576
Evalue	5.38e-234
EggNOG OGs	COG0033@1\|root,KOG0625@2759\|Eukaryota,37R89@33090\|Viridiplantae,3GETM@35493\|Streptophyta,3KX9J@4447\|Liliopsida,3I7I4@38820\|Poales
EC	5.4.2.2
Description	Phosphoglucomutase/phosphomannomutase, C-terminal domain
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1574	Gchil1574	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 988932..990689 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1574.t1.start1	Gchil1574.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 988932..988934 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1574.t1.CDS1	Gchil1574.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 988932..990689 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1574.t1.exon1	Gchil1574.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 988932..990689 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1574.t1.stop1	Gchil1574.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 990687..990689 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1574.t1	Gchil1574.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 988932..990689 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:988932..990689+
coding sequence from alignment at tig00004403_pilon:988932..990689+

mRNA sequence

>Gchil1574.t1 ID=Gchil1574.t1|Name=Gchil1574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=586bp
MSASFIVTSVPTSPIDGQKTGTSGLRKKVSVFQQPNYLQNWVQSLFSSLD
ALKGSTIALGGDGRYWNTEAIRIICRIAAANGVKHVKVGHNGILCTPAMS
AVIRAQSLYGGIILTASHNPGGPTNDFGIKYNVSNGGPAPESVTSRIFAN
TKSISEYAYAALPGASVEHDPFSSVDLSVKSSTTFTNQAEESTFTIEVID
SADDYVNLLRSMFNFEKLSSLFARPNFSFLFDAMSGVTGPYGRRIFVEML
GGKPDCVMRAEPLGDFGGGHPDPNLTYAAQLVAKCDPKQNHDAPDMGAAS
DGDGDRNMILGRGFFVTPSDSVAVIAAKAVDAIPYFSTGLKGVARSMPTA
GALDRVAKAMGIELHEVPTGWKYFGNLMDAGRAQICGEESFGTGSDHVRE
KDGIFAILAWLAIIAHESEGKDKIVSIEDIVTSHWKTYGRNYFSRYDYEE
VESEAANAVMGHLDELQANMNAERGAEDEPMTLDPDFDTKVAVADNFSYV
DPVDGSEAKGQGRRFVFTDGSRVIFRLSGTGSSGATIRMYVERYESDEAA
QKEDAQVALKPFIELALKVSKLQEFTGRDKPTVIT*

spliced messenger RNA

>Gchil1574.t1 ID=Gchil1574.t1|Name=Gchil1574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1758bp|location=Sequence derived from alignment at tig00004403_pilon:988932..990689+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCTTCATTCATCGTCACATCCGTGCCCACGTCTCCCATTGACGG
CCAAAAGACCGGTACCTCCGGACTTCGGAAGAAGGTGTCCGTCTTTCAGC
AGCCAAACTATCTGCAAAACTGGGTTCAATCCTTGTTTTCCTCGCTCGAT
GCATTGAAAGGCTCCACCATTGCACTTGGGGGAGATGGTCGTTACTGGAA
CACCGAGGCCATCCGTATCATTTGCAGAATCGCCGCTGCCAATGGCGTCA
AACATGTCAAGGTCGGACACAACGGCATTCTCTGCACCCCGGCTATGAGT
GCGGTCATCCGCGCCCAGTCTTTGTATGGAGGCATTATTCTTACTGCCAG
CCATAATCCTGGCGGCCCTACCAATGACTTTGGAATCAAATACAATGTTT
CCAATGGCGGCCCCGCGCCGGAGAGCGTCACATCTCGCATTTTCGCAAAC
ACAAAGTCCATCTCGGAGTATGCCTATGCTGCCCTTCCAGGTGCGTCTGT
CGAACACGATCCGTTTTCATCAGTCGATCTTTCCGTCAAGTCCTCCACTA
CCTTCACCAATCAAGCTGAAGAGTCCACCTTCACAATTGAGGTCATCGAC
TCGGCGGATGACTACGTCAATCTGCTTCGTTCCATGTTTAACTTTGAGAA
ACTCTCCTCGTTGTTTGCGCGTCCCAACTTTTCGTTCCTGTTTGACGCCA
TGAGCGGCGTCACGGGACCGTACGGCCGTCGCATCTTTGTCGAGATGCTT
GGAGGAAAGCCTGACTGCGTCATGCGTGCGGAGCCGCTAGGGGACTTTGG
TGGCGGTCACCCGGACCCAAATCTCACTTACGCCGCTCAATTGGTAGCCA
AATGCGATCCGAAACAAAACCATGACGCTCCGGACATGGGCGCTGCTTCT
GATGGAGATGGCGATCGAAACATGATTCTTGGAAGAGGATTCTTTGTCAC
CCCGTCTGACTCAGTGGCCGTGATCGCTGCAAAGGCTGTTGATGCCATCC
CGTACTTCTCCACCGGTTTGAAAGGAGTAGCGCGAAGCATGCCCACTGCT
GGCGCGCTTGACCGTGTTGCGAAGGCGATGGGAATCGAGTTGCACGAAGT
ACCTACTGGTTGGAAGTACTTTGGAAACCTCATGGATGCCGGTCGCGCCC
AAATTTGCGGTGAGGAGTCTTTCGGAACTGGATCTGATCACGTTAGGGAA
AAGGATGGGATCTTTGCGATTTTGGCGTGGCTTGCTATCATTGCACATGA
GAGTGAAGGAAAGGACAAGATTGTGAGCATCGAGGATATTGTCACCTCTC
ATTGGAAGACATATGGCAGGAATTATTTCTCTAGATATGATTATGAGGAA
GTCGAGAGCGAGGCTGCCAACGCTGTGATGGGCCATCTTGATGAATTACA
GGCAAATATGAATGCCGAAAGAGGGGCAGAGGATGAGCCAATGACTCTTG
ACCCCGATTTCGATACCAAGGTTGCCGTAGCGGACAACTTTTCTTACGTC
GACCCGGTCGATGGGTCGGAGGCTAAGGGCCAGGGTCGTCGATTTGTGTT
CACCGATGGTAGTCGCGTGATTTTCCGACTGTCTGGAACCGGCTCTTCTG
GTGCGACAATCCGGATGTATGTAGAACGATATGAGAGTGACGAAGCAGCG
CAAAAGGAAGACGCACAGGTTGCGCTTAAGCCGTTCATTGAGCTTGCGTT
GAAGGTTTCCAAACTACAAGAGTTTACTGGACGTGACAAGCCGACGGTGA
TCACTTGA

protein sequence of Gchil1574.t1

>Gchil1574.t1 ID=Gchil1574.t1|Name=Gchil1574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=586bp
MSASFIVTSVPTSPIDGQKTGTSGLRKKVSVFQQPNYLQNWVQSLFSSLD
ALKGSTIALGGDGRYWNTEAIRIICRIAAANGVKHVKVGHNGILCTPAMS
AVIRAQSLYGGIILTASHNPGGPTNDFGIKYNVSNGGPAPESVTSRIFAN
TKSISEYAYAALPGASVEHDPFSSVDLSVKSSTTFTNQAEESTFTIEVID
SADDYVNLLRSMFNFEKLSSLFARPNFSFLFDAMSGVTGPYGRRIFVEML
GGKPDCVMRAEPLGDFGGGHPDPNLTYAAQLVAKCDPKQNHDAPDMGAAS
DGDGDRNMILGRGFFVTPSDSVAVIAAKAVDAIPYFSTGLKGVARSMPTA
GALDRVAKAMGIELHEVPTGWKYFGNLMDAGRAQICGEESFGTGSDHVRE
KDGIFAILAWLAIIAHESEGKDKIVSIEDIVTSHWKTYGRNYFSRYDYEE
VESEAANAVMGHLDELQANMNAERGAEDEPMTLDPDFDTKVAVADNFSYV
DPVDGSEAKGQGRRFVFTDGSRVIFRLSGTGSSGATIRMYVERYESDEAA
QKEDAQVALKPFIELALKVSKLQEFTGRDKPTVIT*

mRNA from alignment at tig00004403_pilon:988932..990689+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1574.t1 ID=Gchil1574.t1|Name=Gchil1574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1758bp|location=Sequence derived from alignment at tig00004403_pilon:988932..990689+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCTTCATTCATCGTCACATCCGTGCCCACGTCTCCCATTGACGG
CCAAAAGACCGGTACCTCCGGACTTCGGAAGAAGGTGTCCGTCTTTCAGC
AGCCAAACTATCTGCAAAACTGGGTTCAATCCTTGTTTTCCTCGCTCGAT
GCATTGAAAGGCTCCACCATTGCACTTGGGGGAGATGGTCGTTACTGGAA
CACCGAGGCCATCCGTATCATTTGCAGAATCGCCGCTGCCAATGGCGTCA
AACATGTCAAGGTCGGACACAACGGCATTCTCTGCACCCCGGCTATGAGT
GCGGTCATCCGCGCCCAGTCTTTGTATGGAGGCATTATTCTTACTGCCAG
CCATAATCCTGGCGGCCCTACCAATGACTTTGGAATCAAATACAATGTTT
CCAATGGCGGCCCCGCGCCGGAGAGCGTCACATCTCGCATTTTCGCAAAC
ACAAAGTCCATCTCGGAGTATGCCTATGCTGCCCTTCCAGGTGCGTCTGT
CGAACACGATCCGTTTTCATCAGTCGATCTTTCCGTCAAGTCCTCCACTA
CCTTCACCAATCAAGCTGAAGAGTCCACCTTCACAATTGAGGTCATCGAC
TCGGCGGATGACTACGTCAATCTGCTTCGTTCCATGTTTAACTTTGAGAA
ACTCTCCTCGTTGTTTGCGCGTCCCAACTTTTCGTTCCTGTTTGACGCCA
TGAGCGGCGTCACGGGACCGTACGGCCGTCGCATCTTTGTCGAGATGCTT
GGAGGAAAGCCTGACTGCGTCATGCGTGCGGAGCCGCTAGGGGACTTTGG
TGGCGGTCACCCGGACCCAAATCTCACTTACGCCGCTCAATTGGTAGCCA
AATGCGATCCGAAACAAAACCATGACGCTCCGGACATGGGCGCTGCTTCT
GATGGAGATGGCGATCGAAACATGATTCTTGGAAGAGGATTCTTTGTCAC
CCCGTCTGACTCAGTGGCCGTGATCGCTGCAAAGGCTGTTGATGCCATCC
CGTACTTCTCCACCGGTTTGAAAGGAGTAGCGCGAAGCATGCCCACTGCT
GGCGCGCTTGACCGTGTTGCGAAGGCGATGGGAATCGAGTTGCACGAAGT
ACCTACTGGTTGGAAGTACTTTGGAAACCTCATGGATGCCGGTCGCGCCC
AAATTTGCGGTGAGGAGTCTTTCGGAACTGGATCTGATCACGTTAGGGAA
AAGGATGGGATCTTTGCGATTTTGGCGTGGCTTGCTATCATTGCACATGA
GAGTGAAGGAAAGGACAAGATTGTGAGCATCGAGGATATTGTCACCTCTC
ATTGGAAGACATATGGCAGGAATTATTTCTCTAGATATGATTATGAGGAA
GTCGAGAGCGAGGCTGCCAACGCTGTGATGGGCCATCTTGATGAATTACA
GGCAAATATGAATGCCGAAAGAGGGGCAGAGGATGAGCCAATGACTCTTG
ACCCCGATTTCGATACCAAGGTTGCCGTAGCGGACAACTTTTCTTACGTC
GACCCGGTCGATGGGTCGGAGGCTAAGGGCCAGGGTCGTCGATTTGTGTT
CACCGATGGTAGTCGCGTGATTTTCCGACTGTCTGGAACCGGCTCTTCTG
GTGCGACAATCCGGATGTATGTAGAACGATATGAGAGTGACGAAGCAGCG
CAAAAGGAAGACGCACAGGTTGCGCTTAAGCCGTTCATTGAGCTTGCGTT
GAAGGTTTCCAAACTACAAGAGTTTACTGGACGTGACAAGCCGACGGTGA
TCACTTGA

Coding sequence (CDS) from alignment at tig00004403_pilon:988932..990689+

>Gchil1574.t1 ID=Gchil1574.t1|Name=Gchil1574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1758bp|location=Sequence derived from alignment at tig00004403_pilon:988932..990689+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCTTCATTCATCGTCACATCCGTGCCCACGTCTCCCATTGACGG
CCAAAAGACCGGTACCTCCGGACTTCGGAAGAAGGTGTCCGTCTTTCAGC
AGCCAAACTATCTGCAAAACTGGGTTCAATCCTTGTTTTCCTCGCTCGAT
GCATTGAAAGGCTCCACCATTGCACTTGGGGGAGATGGTCGTTACTGGAA
CACCGAGGCCATCCGTATCATTTGCAGAATCGCCGCTGCCAATGGCGTCA
AACATGTCAAGGTCGGACACAACGGCATTCTCTGCACCCCGGCTATGAGT
GCGGTCATCCGCGCCCAGTCTTTGTATGGAGGCATTATTCTTACTGCCAG
CCATAATCCTGGCGGCCCTACCAATGACTTTGGAATCAAATACAATGTTT
CCAATGGCGGCCCCGCGCCGGAGAGCGTCACATCTCGCATTTTCGCAAAC
ACAAAGTCCATCTCGGAGTATGCCTATGCTGCCCTTCCAGGTGCGTCTGT
CGAACACGATCCGTTTTCATCAGTCGATCTTTCCGTCAAGTCCTCCACTA
CCTTCACCAATCAAGCTGAAGAGTCCACCTTCACAATTGAGGTCATCGAC
TCGGCGGATGACTACGTCAATCTGCTTCGTTCCATGTTTAACTTTGAGAA
ACTCTCCTCGTTGTTTGCGCGTCCCAACTTTTCGTTCCTGTTTGACGCCA
TGAGCGGCGTCACGGGACCGTACGGCCGTCGCATCTTTGTCGAGATGCTT
GGAGGAAAGCCTGACTGCGTCATGCGTGCGGAGCCGCTAGGGGACTTTGG
TGGCGGTCACCCGGACCCAAATCTCACTTACGCCGCTCAATTGGTAGCCA
AATGCGATCCGAAACAAAACCATGACGCTCCGGACATGGGCGCTGCTTCT
GATGGAGATGGCGATCGAAACATGATTCTTGGAAGAGGATTCTTTGTCAC
CCCGTCTGACTCAGTGGCCGTGATCGCTGCAAAGGCTGTTGATGCCATCC
CGTACTTCTCCACCGGTTTGAAAGGAGTAGCGCGAAGCATGCCCACTGCT
GGCGCGCTTGACCGTGTTGCGAAGGCGATGGGAATCGAGTTGCACGAAGT
ACCTACTGGTTGGAAGTACTTTGGAAACCTCATGGATGCCGGTCGCGCCC
AAATTTGCGGTGAGGAGTCTTTCGGAACTGGATCTGATCACGTTAGGGAA
AAGGATGGGATCTTTGCGATTTTGGCGTGGCTTGCTATCATTGCACATGA
GAGTGAAGGAAAGGACAAGATTGTGAGCATCGAGGATATTGTCACCTCTC
ATTGGAAGACATATGGCAGGAATTATTTCTCTAGATATGATTATGAGGAA
GTCGAGAGCGAGGCTGCCAACGCTGTGATGGGCCATCTTGATGAATTACA
GGCAAATATGAATGCCGAAAGAGGGGCAGAGGATGAGCCAATGACTCTTG
ACCCCGATTTCGATACCAAGGTTGCCGTAGCGGACAACTTTTCTTACGTC
GACCCGGTCGATGGGTCGGAGGCTAAGGGCCAGGGTCGTCGATTTGTGTT
CACCGATGGTAGTCGCGTGATTTTCCGACTGTCTGGAACCGGCTCTTCTG
GTGCGACAATCCGGATGTATGTAGAACGATATGAGAGTGACGAAGCAGCG
CAAAAGGAAGACGCACAGGTTGCGCTTAAGCCGTTCATTGAGCTTGCGTT
GAAGGTTTCCAAACTACAAGAGTTTACTGGACGTGACAAGCCGACGGTGA
TCACTTGA