Gchil1840.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1840.t1
Unique NameGchil1840.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length694
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2937058..2939328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMK068CT
PFAMsXRN_N
Max annot lvl2759|Eukaryota
KEGG koko:K12618,ko:K12619
KEGG Pathwayko03008,ko03018,map03008,map03018
Evalue3.5e-101
EggNOG OGsCOG5049@1|root,KOG2044@2759|Eukaryota
Description5'-3' exoribonuclease activity
COG categoryADL
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1840Gchil1840Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2937058..2939328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1840.t1Gchil1840.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2937058..2939328 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1840.t1.stop1Gchil1840.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2937058..2937060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1840.t1.CDS1Gchil1840.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2937058..2938343 -
Gchil1840.t1.CDS2Gchil1840.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2938434..2939132 -
Gchil1840.t1.CDS3Gchil1840.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2939232..2939328 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1840.t1.exon1Gchil1840.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2937058..2938343 -
Gchil1840.t1.exon2Gchil1840.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2938434..2939132 -
Gchil1840.t1.exon3Gchil1840.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2939232..2939328 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1840.t1.intron1Gchil1840.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 2938344..2938433 -
Gchil1840.t1.intron2Gchil1840.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 2939133..2939231 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1840.t1.start1Gchil1840.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2939326..2939328 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1840.t1 ID=Gchil1840.t1|Name=Gchil1840.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=694bp
MGIFGFQKWFLGNFPEVVRVQQGAKFGEVYDHVAFDINQILHQALRRATT
RQTLATAIFRELDQILKNCIPRKSVFFAFDGPAPLAKLNTQRRRRRKKST
EYVSDYIDEKGMLRKPKFAKLSIDSLEMTPGVETLYFVRDSVEYWAYSRL
QNDRKYRNVEIRISGSDVPGEGELKLVDYCRTGKFPSTDSVVVVGGDADI
VLQGLTTIPIRNFFVYLRNFAGTKGKRQSYVVSVWELARTFERIFPNESS
SVRLDFVLLALLNGNDYIPKVRGISLSRTWRRYVSLKLVSKGGDLPPFHG
HSLVDAERRTLNWPMFYSLMDSIGVPVPSIADAEQEKNAGPGTSPTINQP
KSKHGYLTISDSDVDEHIVYTGNEDGIPMDRVDDVFKRGGLDSTSEGSVS
DSDDIGAEEDQDYFDEEQEHIQTLIALSGDSNKFYDTNRWVRALLWNLQM
YVDGYCGHYSFQYGKPYGPPINEILKYIRNHDGDPFLHQAPISRTRPLLP
HEAAMAVLPKHAKHLLPIPLQRMYDDPVVLKKIFIGNDDVNVANMVTEIS
RIPKSEFTPEELHRTVFGSPILLRLPRPNDYVQYMNPRVKKPGQRFEDVR
NRPVIYRAPFKMTTIPPCYEWPKGTIPKMLELSYKTVRGSILRTKKGTLP
ENIRHVKNMGDRTQRKLHRSGGYMRPRISHSKRAHENPKAPNN*
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spliced messenger RNA

>Gchil1840.t1 ID=Gchil1840.t1|Name=Gchil1840.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2082bp|location=Sequence derived from alignment at tig00004403_pilon:2937058..2939328- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTATTTTTGGATTCCAAAAGTGGTTTCTAGGCAATTTTCCAGAGGT
CGTTAGAGTGCAGCAAGGCGCCAAATTCGGAGAAGTATACGATCATGTCG
CATTCGACATAAATCAGATTCTGCATCAGGCCTTGCGACGTGCCACTACC
AGACAGACACTAGCCACCGCTATCTTTCGTGAGCTCGACCAGATTCTAAA
GAATTGCATCCCGAGAAAATCAGTATTCTTCGCATTTGACGGGCCAGCTC
CCCTGGCGAAGCTAAACACCCAGCGCCGCCGCCGTCGTAAGAAAAGCACA
GAGTATGTATCTGACTATATTGATGAGAAAGGCATGCTTCGAAAACCAAA
GTTTGCGAAACTGTCAATTGATTCCTTGGAAATGACTCCCGGCGTCGAAA
CTCTGTATTTTGTACGCGACTCAGTCGAGTATTGGGCCTATTCCCGTCTA
CAAAATGATCGCAAGTATCGCAACGTAGAAATTCGTATCTCTGGCTCCGA
TGTCCCTGGTGAGGGCGAGTTAAAATTGGTTGACTATTGTCGAACCGGCA
AATTTCCATCAACAGACTCTGTCGTCGTCGTAGGCGGCGATGCAGATATT
GTGCTTCAAGGGCTCACTACTATTCCAATCCGAAACTTCTTCGTGTATTT
ACGCAACTTTGCGGGGACGAAAGGGAAGAGGCAGAGTTATGTCGTCAGTG
TATGGGAACTTGCTCGAACTTTTGAACGTATCTTTCCGAACGAATCCTCC
AGCGTGCGTCTCGACTTTGTGCTTCTAGCACTTCTAAATGGTAACGACTA
TATCCCGAAAGTTCGAGGTATTTCTCTCTCACGCACGTGGCGTCGTTATG
TAAGCTTGAAGTTGGTATCTAAAGGTGGGGACTTACCCCCGTTTCATGGG
CATTCTCTCGTGGATGCAGAGCGAAGAACTCTGAACTGGCCAATGTTCTA
CTCATTGATGGATAGTATTGGTGTCCCCGTGCCATCCATAGCGGATGCAG
AGCAAGAGAAAAATGCAGGACCAGGAACTTCACCTACCATCAACCAACCA
AAATCGAAGCATGGTTATTTGACCATTTCGGATTCAGATGTTGATGAGCA
CATTGTGTATACTGGAAACGAAGATGGAATCCCTATGGATCGCGTGGACG
ACGTTTTTAAGCGCGGGGGCCTCGATTCAACATCTGAAGGGAGCGTTTCT
GACTCAGATGACATTGGAGCAGAAGAAGACCAAGACTACTTTGACGAAGA
GCAGGAGCATATTCAAACATTGATAGCGCTTTCTGGTGACTCGAACAAGT
TTTATGATACAAACCGGTGGGTGCGAGCGCTGCTATGGAACTTACAAATG
TACGTAGATGGGTACTGCGGGCACTACAGCTTTCAGTATGGAAAGCCATA
CGGACCTCCGATCAATGAAATTTTGAAGTACATTCGCAACCACGATGGGG
ACCCCTTCCTTCATCAAGCGCCAATTTCACGTACACGGCCGCTTTTGCCA
CATGAAGCTGCCATGGCTGTTCTTCCGAAACATGCGAAGCATCTTCTCCC
AATTCCGTTGCAACGGATGTATGATGATCCTGTGGTATTGAAGAAAATAT
TCATTGGTAACGATGATGTGAACGTGGCGAACATGGTAACGGAGATCAGT
CGCATTCCAAAGTCTGAGTTTACCCCGGAAGAGCTGCACAGAACAGTATT
TGGTTCACCAATTCTATTGCGACTACCGCGTCCGAACGACTACGTTCAGT
ACATGAATCCAAGAGTGAAAAAGCCGGGGCAAAGGTTTGAAGATGTTCGC
AATCGACCAGTGATTTATCGTGCACCGTTCAAAATGACGACCATTCCTCC
CTGCTATGAATGGCCTAAGGGAACAATCCCAAAAATGCTGGAGCTATCGT
ACAAGACCGTTCGAGGGTCTATTCTAAGGACGAAAAAAGGGACTCTGCCC
GAAAACATTAGACATGTTAAGAACATGGGTGACAGGACGCAGCGAAAATT
GCATCGGAGCGGTGGGTACATGCGACCGCGGATTTCACATTCGAAACGAG
CACACGAAAATCCAAAGGCACCTAACAACTGA
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protein sequence of Gchil1840.t1

>Gchil1840.t1 ID=Gchil1840.t1|Name=Gchil1840.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=694bp
MGIFGFQKWFLGNFPEVVRVQQGAKFGEVYDHVAFDINQILHQALRRATT
RQTLATAIFRELDQILKNCIPRKSVFFAFDGPAPLAKLNTQRRRRRKKST
EYVSDYIDEKGMLRKPKFAKLSIDSLEMTPGVETLYFVRDSVEYWAYSRL
QNDRKYRNVEIRISGSDVPGEGELKLVDYCRTGKFPSTDSVVVVGGDADI
VLQGLTTIPIRNFFVYLRNFAGTKGKRQSYVVSVWELARTFERIFPNESS
SVRLDFVLLALLNGNDYIPKVRGISLSRTWRRYVSLKLVSKGGDLPPFHG
HSLVDAERRTLNWPMFYSLMDSIGVPVPSIADAEQEKNAGPGTSPTINQP
KSKHGYLTISDSDVDEHIVYTGNEDGIPMDRVDDVFKRGGLDSTSEGSVS
DSDDIGAEEDQDYFDEEQEHIQTLIALSGDSNKFYDTNRWVRALLWNLQM
YVDGYCGHYSFQYGKPYGPPINEILKYIRNHDGDPFLHQAPISRTRPLLP
HEAAMAVLPKHAKHLLPIPLQRMYDDPVVLKKIFIGNDDVNVANMVTEIS
RIPKSEFTPEELHRTVFGSPILLRLPRPNDYVQYMNPRVKKPGQRFEDVR
NRPVIYRAPFKMTTIPPCYEWPKGTIPKMLELSYKTVRGSILRTKKGTLP
ENIRHVKNMGDRTQRKLHRSGGYMRPRISHSKRAHENPKAPNN*
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mRNA from alignment at tig00004403_pilon:2937058..2939328-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1840.t1 ID=Gchil1840.t1|Name=Gchil1840.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2271bp|location=Sequence derived from alignment at tig00004403_pilon:2937058..2939328- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTATTTTTGGATTCCAAAAGTGGTTTCTAGGCAATTTTCCAGAGGT
CGTTAGAGTGCAGCAAGGCGCCAAATTCGGAGAAGTATACGATCATGGTG
AGTTTAATCTCAGCAGCTCGTTTTACGCAAACATCAAACCTCTCAGTATA
GTTTTCTAACTGTTTCTGTCTATTCTTCTTCATAATTGCTTGTCAGTCGC
ATTCGACATAAATCAGATTCTGCATCAGGCCTTGCGACGTGCCACTACCA
GACAGACACTAGCCACCGCTATCTTTCGTGAGCTCGACCAGATTCTAAAG
AATTGCATCCCGAGAAAATCAGTATTCTTCGCATTTGACGGGCCAGCTCC
CCTGGCGAAGCTAAACACCCAGCGCCGCCGCCGTCGTAAGAAAAGCACAG
AGTATGTATCTGACTATATTGATGAGAAAGGCATGCTTCGAAAACCAAAG
TTTGCGAAACTGTCAATTGATTCCTTGGAAATGACTCCCGGCGTCGAAAC
TCTGTATTTTGTACGCGACTCAGTCGAGTATTGGGCCTATTCCCGTCTAC
AAAATGATCGCAAGTATCGCAACGTAGAAATTCGTATCTCTGGCTCCGAT
GTCCCTGGTGAGGGCGAGTTAAAATTGGTTGACTATTGTCGAACCGGCAA
ATTTCCATCAACAGACTCTGTCGTCGTCGTAGGCGGCGATGCAGATATTG
TGCTTCAAGGGCTCACTACTATTCCAATCCGAAACTTCTTCGTGTATTTA
CGCAACTTTGCGGGGACGAAAGGGAAGAGGCAGAGTTATGTCGTCAGTGT
ATGGGAACTTGCTCGAACTTTTGAACGTATCTTTCCGAACGAATCCTCCA
GCGTGCGTCTCGACTTTGTGCTTCTAGCACTTCTAAATGGTAACGGTAAG
TCCTAATGTAAAGCATTCGATACAACGCCTTTCATATTCTTCGTAACCCG
CAAACATCATGGTCTAACATTAGAGTCCTGTCCAGACTATATCCCGAAAG
TTCGAGGTATTTCTCTCTCACGCACGTGGCGTCGTTATGTAAGCTTGAAG
TTGGTATCTAAAGGTGGGGACTTACCCCCGTTTCATGGGCATTCTCTCGT
GGATGCAGAGCGAAGAACTCTGAACTGGCCAATGTTCTACTCATTGATGG
ATAGTATTGGTGTCCCCGTGCCATCCATAGCGGATGCAGAGCAAGAGAAA
AATGCAGGACCAGGAACTTCACCTACCATCAACCAACCAAAATCGAAGCA
TGGTTATTTGACCATTTCGGATTCAGATGTTGATGAGCACATTGTGTATA
CTGGAAACGAAGATGGAATCCCTATGGATCGCGTGGACGACGTTTTTAAG
CGCGGGGGCCTCGATTCAACATCTGAAGGGAGCGTTTCTGACTCAGATGA
CATTGGAGCAGAAGAAGACCAAGACTACTTTGACGAAGAGCAGGAGCATA
TTCAAACATTGATAGCGCTTTCTGGTGACTCGAACAAGTTTTATGATACA
AACCGGTGGGTGCGAGCGCTGCTATGGAACTTACAAATGTACGTAGATGG
GTACTGCGGGCACTACAGCTTTCAGTATGGAAAGCCATACGGACCTCCGA
TCAATGAAATTTTGAAGTACATTCGCAACCACGATGGGGACCCCTTCCTT
CATCAAGCGCCAATTTCACGTACACGGCCGCTTTTGCCACATGAAGCTGC
CATGGCTGTTCTTCCGAAACATGCGAAGCATCTTCTCCCAATTCCGTTGC
AACGGATGTATGATGATCCTGTGGTATTGAAGAAAATATTCATTGGTAAC
GATGATGTGAACGTGGCGAACATGGTAACGGAGATCAGTCGCATTCCAAA
GTCTGAGTTTACCCCGGAAGAGCTGCACAGAACAGTATTTGGTTCACCAA
TTCTATTGCGACTACCGCGTCCGAACGACTACGTTCAGTACATGAATCCA
AGAGTGAAAAAGCCGGGGCAAAGGTTTGAAGATGTTCGCAATCGACCAGT
GATTTATCGTGCACCGTTCAAAATGACGACCATTCCTCCCTGCTATGAAT
GGCCTAAGGGAACAATCCCAAAAATGCTGGAGCTATCGTACAAGACCGTT
CGAGGGTCTATTCTAAGGACGAAAAAAGGGACTCTGCCCGAAAACATTAG
ACATGTTAAGAACATGGGTGACAGGACGCAGCGAAAATTGCATCGGAGCG
GTGGGTACATGCGACCGCGGATTTCACATTCGAAACGAGCACACGAAAAT
CCAAAGGCACCTAACAACTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:2937058..2939328-

>Gchil1840.t1 ID=Gchil1840.t1|Name=Gchil1840.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2082bp|location=Sequence derived from alignment at tig00004403_pilon:2937058..2939328- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTATTTTTGGATTCCAAAAGTGGTTTCTAGGCAATTTTCCAGAGGT
CGTTAGAGTGCAGCAAGGCGCCAAATTCGGAGAAGTATACGATCATGTCG
CATTCGACATAAATCAGATTCTGCATCAGGCCTTGCGACGTGCCACTACC
AGACAGACACTAGCCACCGCTATCTTTCGTGAGCTCGACCAGATTCTAAA
GAATTGCATCCCGAGAAAATCAGTATTCTTCGCATTTGACGGGCCAGCTC
CCCTGGCGAAGCTAAACACCCAGCGCCGCCGCCGTCGTAAGAAAAGCACA
GAGTATGTATCTGACTATATTGATGAGAAAGGCATGCTTCGAAAACCAAA
GTTTGCGAAACTGTCAATTGATTCCTTGGAAATGACTCCCGGCGTCGAAA
CTCTGTATTTTGTACGCGACTCAGTCGAGTATTGGGCCTATTCCCGTCTA
CAAAATGATCGCAAGTATCGCAACGTAGAAATTCGTATCTCTGGCTCCGA
TGTCCCTGGTGAGGGCGAGTTAAAATTGGTTGACTATTGTCGAACCGGCA
AATTTCCATCAACAGACTCTGTCGTCGTCGTAGGCGGCGATGCAGATATT
GTGCTTCAAGGGCTCACTACTATTCCAATCCGAAACTTCTTCGTGTATTT
ACGCAACTTTGCGGGGACGAAAGGGAAGAGGCAGAGTTATGTCGTCAGTG
TATGGGAACTTGCTCGAACTTTTGAACGTATCTTTCCGAACGAATCCTCC
AGCGTGCGTCTCGACTTTGTGCTTCTAGCACTTCTAAATGGTAACGACTA
TATCCCGAAAGTTCGAGGTATTTCTCTCTCACGCACGTGGCGTCGTTATG
TAAGCTTGAAGTTGGTATCTAAAGGTGGGGACTTACCCCCGTTTCATGGG
CATTCTCTCGTGGATGCAGAGCGAAGAACTCTGAACTGGCCAATGTTCTA
CTCATTGATGGATAGTATTGGTGTCCCCGTGCCATCCATAGCGGATGCAG
AGCAAGAGAAAAATGCAGGACCAGGAACTTCACCTACCATCAACCAACCA
AAATCGAAGCATGGTTATTTGACCATTTCGGATTCAGATGTTGATGAGCA
CATTGTGTATACTGGAAACGAAGATGGAATCCCTATGGATCGCGTGGACG
ACGTTTTTAAGCGCGGGGGCCTCGATTCAACATCTGAAGGGAGCGTTTCT
GACTCAGATGACATTGGAGCAGAAGAAGACCAAGACTACTTTGACGAAGA
GCAGGAGCATATTCAAACATTGATAGCGCTTTCTGGTGACTCGAACAAGT
TTTATGATACAAACCGGTGGGTGCGAGCGCTGCTATGGAACTTACAAATG
TACGTAGATGGGTACTGCGGGCACTACAGCTTTCAGTATGGAAAGCCATA
CGGACCTCCGATCAATGAAATTTTGAAGTACATTCGCAACCACGATGGGG
ACCCCTTCCTTCATCAAGCGCCAATTTCACGTACACGGCCGCTTTTGCCA
CATGAAGCTGCCATGGCTGTTCTTCCGAAACATGCGAAGCATCTTCTCCC
AATTCCGTTGCAACGGATGTATGATGATCCTGTGGTATTGAAGAAAATAT
TCATTGGTAACGATGATGTGAACGTGGCGAACATGGTAACGGAGATCAGT
CGCATTCCAAAGTCTGAGTTTACCCCGGAAGAGCTGCACAGAACAGTATT
TGGTTCACCAATTCTATTGCGACTACCGCGTCCGAACGACTACGTTCAGT
ACATGAATCCAAGAGTGAAAAAGCCGGGGCAAAGGTTTGAAGATGTTCGC
AATCGACCAGTGATTTATCGTGCACCGTTCAAAATGACGACCATTCCTCC
CTGCTATGAATGGCCTAAGGGAACAATCCCAAAAATGCTGGAGCTATCGT
ACAAGACCGTTCGAGGGTCTATTCTAAGGACGAAAAAAGGGACTCTGCCC
GAAAACATTAGACATGTTAAGAACATGGGTGACAGGACGCAGCGAAAATT
GCATCGGAGCGGTGGGTACATGCGACCGCGGATTTCACATTCGAAACGAG
CACACGAAAATCCAAAGGCACCTAACAACTGA
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