Gchil1834.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1834.t1
Unique Name	Gchil1834.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	628

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:2869248..2871131 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	192875.XP_004365155.1
Preferred name	ACSBG1
PFAMs	AMP-binding
Max annot lvl	33154\|Opisthokonta
KEGG rclass	RC00004,RC00014
KEGG ko	ko:K15013
KEGG Reaction	R01280
KEGG Pathway	ko00061,ko00071,ko01100,ko01212,ko03320,ko04920,map00061,map00071,map01100,map01212,map03320,map04920
KEGG Module	M00086
GOs	GO:0000003,GO:0000038,GO:0001552,GO:0001676,GO:0003006,GO:0003674,GO:0003824,GO:0004467,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006635,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007272,GO:0007275,GO:0007399,GO:0007548,GO:0008150,GO:0008152,GO:0008366,GO:0008406,GO:0008585,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0012505,GO:0014070,GO:0015645,GO:0016020,GO:0016042,GO:0016053,GO:0016054,GO:0016289,GO:0016405,GO:0016787,GO:0016788,GO:0016790,GO:0016874,GO:0016877,GO:0016878,GO:0018130,GO:0019395,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019752,GO:0022414,GO:0030258,GO:0031957,GO:0031960,GO:0032501,GO:0032502,GO:0032787,GO:0033554,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034440,GO:0034641,GO:0034654,GO:0034976,GO:0035336,GO:0035337,GO:0035338,GO:0035383,GO:0035384,GO:0042221,GO:0042552,GO:0042592,GO:0042749,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0045187,GO:0045938,GO:0046390,GO:0046394,GO:0046395,GO:0046483,GO:0046545,GO:0046660,GO:0046949,GO:0047617,GO:0048513,GO:0048518,GO:0048520,GO:0048545,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050795,GO:0050896,GO:0051186,GO:0051188,GO:0051239,GO:0051240,GO:0051384,GO:0051716,GO:0055086,GO:0055114,GO:0060249,GO:0061458,GO:0065007,GO:0065008,GO:0070050,GO:0071616,GO:0071704,GO:0072329,GO:0072330,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901575,GO:1901576
Evalue	8.78e-169
EggNOG OGs	COG1022@1\|root,KOG1256@2759\|Eukaryota,39DMK@33154\|Opisthokonta
EC	6.2.1.3
Description	acyl-CoA synthetase bubblegum family member
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1834	Gchil1834	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 2869248..2871131 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1834.t1.start1	Gchil1834.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 2869248..2869250 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1834.t1.CDS1	Gchil1834.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 2869248..2871131 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1834.t1.exon1	Gchil1834.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 2869248..2871131 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1834.t1.stop1	Gchil1834.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 2871129..2871131 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1834.t1	Gchil1834.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 2869248..2871131 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:2869248..2871131+
coding sequence from alignment at tig00004403_pilon:2869248..2871131+

mRNA sequence

>Gchil1834.t1 ID=Gchil1834.t1|Name=Gchil1834.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=628bp
MTHTTWATDVTEKRPIIGHDADIPRRTLPQAVVDAVRERGHIKQYFTSDG
TPYTMSEFYQISRRVAKALLHLRLQPFEGVAILGFNSLNWFAADIGATLA
GCLPAGIYTTNKAEIVAYIINHSRSRVVFVDDQPALDKVLSVADQCPQLA
SIVVWGNVDVSSYMSHAELVRSWDQFLALANDVSDADLDARASAQAPENV
CKLIYTSGTTGPPKAVMISHDNVVFTATVTGILVGASIDDHLVSFLPCSH
IAANMVDITGSIVTGLKVTFAEPDALKGSLVKTLKKVRPTLFLAVPRVFE
KIQEKLLQIGAQNGPIKRAISSWAKSIGTAASLARDTGDELMPWGYKLAR
MLVFDNVKKALGLDRCRLIFNSAAPLQRTTEAYFKSLDIRIIDIYGMSEG
TGPLTANVGGYKAGTSGKVIPGGEVKAINPDQTGEGELCFRGRNIFVGYL
DNPEETSKTIDQNGFIHSGDLGRVDEDGYVSITGRVKELLVTAGGENVAP
ALAECTIRDELDGIARAFAVGDKKNFISCLLVPYMDEEGNLIGPAANVNP
DLKTAADAVNDPVWLNYINEGLERANKHAISNAAKVRKFRLLYKDFTVEG
GELTPTMKVKRKVVVEKYASLIEEMYA*

spliced messenger RNA

>Gchil1834.t1 ID=Gchil1834.t1|Name=Gchil1834.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1884bp|location=Sequence derived from alignment at tig00004403_pilon:2869248..2871131+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCACACGACCTGGGCTACTGATGTCACCGAGAAGCGCCCCATCAT
CGGCCACGACGCCGACATTCCTCGCCGAACGCTCCCCCAGGCTGTTGTGG
ACGCCGTTCGCGAACGTGGCCACATCAAACAGTATTTCACGTCGGACGGA
ACTCCGTACACCATGTCCGAGTTTTATCAAATCTCACGCCGCGTTGCTAA
AGCGCTGCTTCACCTCAGACTGCAGCCCTTTGAAGGAGTCGCCATTCTGG
GGTTTAACTCGCTAAATTGGTTTGCTGCCGATATCGGCGCCACGCTGGCC
GGCTGTTTACCAGCCGGCATTTATACCACCAATAAAGCAGAGATTGTTGC
TTACATTATCAATCACAGTCGCAGTCGCGTCGTTTTTGTGGATGATCAGC
CCGCCTTGGACAAAGTACTCTCCGTCGCCGACCAGTGCCCGCAGCTCGCC
TCTATCGTTGTCTGGGGTAATGTGGACGTGAGCTCATACATGTCGCATGC
TGAGTTAGTGCGCTCGTGGGATCAGTTTCTGGCGCTCGCTAACGACGTGT
CTGATGCTGACCTTGATGCGAGGGCGAGTGCGCAAGCCCCGGAGAATGTT
TGCAAACTCATCTACACCAGCGGAACAACTGGGCCGCCGAAAGCCGTCAT
GATCTCTCACGACAACGTCGTGTTCACTGCCACTGTCACCGGAATATTGG
TGGGCGCCAGCATAGATGACCATCTCGTATCATTTCTACCGTGTTCTCAT
ATCGCTGCCAACATGGTTGACATTACGGGCTCCATTGTGACGGGCCTCAA
GGTTACATTTGCCGAACCAGATGCTCTAAAAGGCTCCCTGGTGAAGACTT
TGAAAAAGGTGCGACCCACTTTGTTCCTGGCCGTTCCTCGCGTGTTCGAG
AAGATTCAGGAGAAACTCTTGCAGATCGGTGCGCAGAACGGACCCATAAA
ACGTGCCATATCCTCGTGGGCAAAGTCTATCGGAACCGCTGCGTCTCTCG
CTCGTGATACAGGCGACGAGCTTATGCCATGGGGGTACAAACTGGCACGA
ATGCTTGTGTTTGACAATGTAAAGAAGGCGCTTGGTCTTGATCGTTGTAG
ACTTATCTTTAACTCTGCAGCGCCTTTGCAAAGGACTACCGAAGCTTACT
TTAAGAGTCTTGACATTCGAATCATTGACATTTATGGAATGAGCGAGGGT
ACCGGCCCGCTGACTGCCAATGTTGGCGGCTATAAGGCCGGGACATCCGG
GAAGGTCATACCCGGGGGCGAAGTTAAGGCCATCAATCCGGATCAAACTG
GTGAGGGTGAGCTTTGTTTTCGAGGGCGCAATATATTTGTTGGTTACCTG
GACAACCCGGAGGAAACGTCAAAAACAATTGATCAAAATGGCTTCATACA
TTCTGGCGATCTTGGGCGGGTGGATGAGGATGGCTATGTGTCTATCACTG
GTCGAGTGAAGGAACTTCTCGTGACAGCCGGTGGCGAAAATGTTGCACCT
GCCCTGGCTGAATGCACAATTAGAGATGAACTGGACGGCATAGCTCGTGC
TTTTGCTGTGGGTGATAAGAAGAATTTCATCTCTTGTTTGCTCGTTCCAT
ACATGGACGAGGAGGGTAATTTGATTGGACCCGCTGCCAACGTAAACCCC
GACTTGAAGACTGCGGCTGATGCTGTCAATGATCCCGTCTGGTTGAACTA
TATCAACGAGGGCCTTGAGCGGGCCAACAAACATGCCATCAGTAATGCTG
CGAAGGTGCGAAAGTTCAGACTGCTTTACAAAGACTTCACCGTTGAGGGT
GGCGAACTTACTCCTACCATGAAGGTTAAGAGGAAAGTCGTGGTGGAAAA
ATATGCAAGCCTTATTGAAGAGATGTACGCTTAG

protein sequence of Gchil1834.t1

>Gchil1834.t1 ID=Gchil1834.t1|Name=Gchil1834.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=628bp
MTHTTWATDVTEKRPIIGHDADIPRRTLPQAVVDAVRERGHIKQYFTSDG
TPYTMSEFYQISRRVAKALLHLRLQPFEGVAILGFNSLNWFAADIGATLA
GCLPAGIYTTNKAEIVAYIINHSRSRVVFVDDQPALDKVLSVADQCPQLA
SIVVWGNVDVSSYMSHAELVRSWDQFLALANDVSDADLDARASAQAPENV
CKLIYTSGTTGPPKAVMISHDNVVFTATVTGILVGASIDDHLVSFLPCSH
IAANMVDITGSIVTGLKVTFAEPDALKGSLVKTLKKVRPTLFLAVPRVFE
KIQEKLLQIGAQNGPIKRAISSWAKSIGTAASLARDTGDELMPWGYKLAR
MLVFDNVKKALGLDRCRLIFNSAAPLQRTTEAYFKSLDIRIIDIYGMSEG
TGPLTANVGGYKAGTSGKVIPGGEVKAINPDQTGEGELCFRGRNIFVGYL
DNPEETSKTIDQNGFIHSGDLGRVDEDGYVSITGRVKELLVTAGGENVAP
ALAECTIRDELDGIARAFAVGDKKNFISCLLVPYMDEEGNLIGPAANVNP
DLKTAADAVNDPVWLNYINEGLERANKHAISNAAKVRKFRLLYKDFTVEG
GELTPTMKVKRKVVVEKYASLIEEMYA*

mRNA from alignment at tig00004403_pilon:2869248..2871131+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1834.t1 ID=Gchil1834.t1|Name=Gchil1834.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1884bp|location=Sequence derived from alignment at tig00004403_pilon:2869248..2871131+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCCACACGACCTGGGCTACTGATGTCACCGAGAAGCGCCCCATCAT
CGGCCACGACGCCGACATTCCTCGCCGAACGCTCCCCCAGGCTGTTGTGG
ACGCCGTTCGCGAACGTGGCCACATCAAACAGTATTTCACGTCGGACGGA
ACTCCGTACACCATGTCCGAGTTTTATCAAATCTCACGCCGCGTTGCTAA
AGCGCTGCTTCACCTCAGACTGCAGCCCTTTGAAGGAGTCGCCATTCTGG
GGTTTAACTCGCTAAATTGGTTTGCTGCCGATATCGGCGCCACGCTGGCC
GGCTGTTTACCAGCCGGCATTTATACCACCAATAAAGCAGAGATTGTTGC
TTACATTATCAATCACAGTCGCAGTCGCGTCGTTTTTGTGGATGATCAGC
CCGCCTTGGACAAAGTACTCTCCGTCGCCGACCAGTGCCCGCAGCTCGCC
TCTATCGTTGTCTGGGGTAATGTGGACGTGAGCTCATACATGTCGCATGC
TGAGTTAGTGCGCTCGTGGGATCAGTTTCTGGCGCTCGCTAACGACGTGT
CTGATGCTGACCTTGATGCGAGGGCGAGTGCGCAAGCCCCGGAGAATGTT
TGCAAACTCATCTACACCAGCGGAACAACTGGGCCGCCGAAAGCCGTCAT
GATCTCTCACGACAACGTCGTGTTCACTGCCACTGTCACCGGAATATTGG
TGGGCGCCAGCATAGATGACCATCTCGTATCATTTCTACCGTGTTCTCAT
ATCGCTGCCAACATGGTTGACATTACGGGCTCCATTGTGACGGGCCTCAA
GGTTACATTTGCCGAACCAGATGCTCTAAAAGGCTCCCTGGTGAAGACTT
TGAAAAAGGTGCGACCCACTTTGTTCCTGGCCGTTCCTCGCGTGTTCGAG
AAGATTCAGGAGAAACTCTTGCAGATCGGTGCGCAGAACGGACCCATAAA
ACGTGCCATATCCTCGTGGGCAAAGTCTATCGGAACCGCTGCGTCTCTCG
CTCGTGATACAGGCGACGAGCTTATGCCATGGGGGTACAAACTGGCACGA
ATGCTTGTGTTTGACAATGTAAAGAAGGCGCTTGGTCTTGATCGTTGTAG
ACTTATCTTTAACTCTGCAGCGCCTTTGCAAAGGACTACCGAAGCTTACT
TTAAGAGTCTTGACATTCGAATCATTGACATTTATGGAATGAGCGAGGGT
ACCGGCCCGCTGACTGCCAATGTTGGCGGCTATAAGGCCGGGACATCCGG
GAAGGTCATACCCGGGGGCGAAGTTAAGGCCATCAATCCGGATCAAACTG
GTGAGGGTGAGCTTTGTTTTCGAGGGCGCAATATATTTGTTGGTTACCTG
GACAACCCGGAGGAAACGTCAAAAACAATTGATCAAAATGGCTTCATACA
TTCTGGCGATCTTGGGCGGGTGGATGAGGATGGCTATGTGTCTATCACTG
GTCGAGTGAAGGAACTTCTCGTGACAGCCGGTGGCGAAAATGTTGCACCT
GCCCTGGCTGAATGCACAATTAGAGATGAACTGGACGGCATAGCTCGTGC
TTTTGCTGTGGGTGATAAGAAGAATTTCATCTCTTGTTTGCTCGTTCCAT
ACATGGACGAGGAGGGTAATTTGATTGGACCCGCTGCCAACGTAAACCCC
GACTTGAAGACTGCGGCTGATGCTGTCAATGATCCCGTCTGGTTGAACTA
TATCAACGAGGGCCTTGAGCGGGCCAACAAACATGCCATCAGTAATGCTG
CGAAGGTGCGAAAGTTCAGACTGCTTTACAAAGACTTCACCGTTGAGGGT
GGCGAACTTACTCCTACCATGAAGGTTAAGAGGAAAGTCGTGGTGGAAAA
ATATGCAAGCCTTATTGAAGAGATGTACGCTTAG

Coding sequence (CDS) from alignment at tig00004403_pilon:2869248..2871131+

>Gchil1834.t1 ID=Gchil1834.t1|Name=Gchil1834.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1884bp|location=Sequence derived from alignment at tig00004403_pilon:2869248..2871131+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCCACACGACCTGGGCTACTGATGTCACCGAGAAGCGCCCCATCAT
CGGCCACGACGCCGACATTCCTCGCCGAACGCTCCCCCAGGCTGTTGTGG
ACGCCGTTCGCGAACGTGGCCACATCAAACAGTATTTCACGTCGGACGGA
ACTCCGTACACCATGTCCGAGTTTTATCAAATCTCACGCCGCGTTGCTAA
AGCGCTGCTTCACCTCAGACTGCAGCCCTTTGAAGGAGTCGCCATTCTGG
GGTTTAACTCGCTAAATTGGTTTGCTGCCGATATCGGCGCCACGCTGGCC
GGCTGTTTACCAGCCGGCATTTATACCACCAATAAAGCAGAGATTGTTGC
TTACATTATCAATCACAGTCGCAGTCGCGTCGTTTTTGTGGATGATCAGC
CCGCCTTGGACAAAGTACTCTCCGTCGCCGACCAGTGCCCGCAGCTCGCC
TCTATCGTTGTCTGGGGTAATGTGGACGTGAGCTCATACATGTCGCATGC
TGAGTTAGTGCGCTCGTGGGATCAGTTTCTGGCGCTCGCTAACGACGTGT
CTGATGCTGACCTTGATGCGAGGGCGAGTGCGCAAGCCCCGGAGAATGTT
TGCAAACTCATCTACACCAGCGGAACAACTGGGCCGCCGAAAGCCGTCAT
GATCTCTCACGACAACGTCGTGTTCACTGCCACTGTCACCGGAATATTGG
TGGGCGCCAGCATAGATGACCATCTCGTATCATTTCTACCGTGTTCTCAT
ATCGCTGCCAACATGGTTGACATTACGGGCTCCATTGTGACGGGCCTCAA
GGTTACATTTGCCGAACCAGATGCTCTAAAAGGCTCCCTGGTGAAGACTT
TGAAAAAGGTGCGACCCACTTTGTTCCTGGCCGTTCCTCGCGTGTTCGAG
AAGATTCAGGAGAAACTCTTGCAGATCGGTGCGCAGAACGGACCCATAAA
ACGTGCCATATCCTCGTGGGCAAAGTCTATCGGAACCGCTGCGTCTCTCG
CTCGTGATACAGGCGACGAGCTTATGCCATGGGGGTACAAACTGGCACGA
ATGCTTGTGTTTGACAATGTAAAGAAGGCGCTTGGTCTTGATCGTTGTAG
ACTTATCTTTAACTCTGCAGCGCCTTTGCAAAGGACTACCGAAGCTTACT
TTAAGAGTCTTGACATTCGAATCATTGACATTTATGGAATGAGCGAGGGT
ACCGGCCCGCTGACTGCCAATGTTGGCGGCTATAAGGCCGGGACATCCGG
GAAGGTCATACCCGGGGGCGAAGTTAAGGCCATCAATCCGGATCAAACTG
GTGAGGGTGAGCTTTGTTTTCGAGGGCGCAATATATTTGTTGGTTACCTG
GACAACCCGGAGGAAACGTCAAAAACAATTGATCAAAATGGCTTCATACA
TTCTGGCGATCTTGGGCGGGTGGATGAGGATGGCTATGTGTCTATCACTG
GTCGAGTGAAGGAACTTCTCGTGACAGCCGGTGGCGAAAATGTTGCACCT
GCCCTGGCTGAATGCACAATTAGAGATGAACTGGACGGCATAGCTCGTGC
TTTTGCTGTGGGTGATAAGAAGAATTTCATCTCTTGTTTGCTCGTTCCAT
ACATGGACGAGGAGGGTAATTTGATTGGACCCGCTGCCAACGTAAACCCC
GACTTGAAGACTGCGGCTGATGCTGTCAATGATCCCGTCTGGTTGAACTA
TATCAACGAGGGCCTTGAGCGGGCCAACAAACATGCCATCAGTAATGCTG
CGAAGGTGCGAAAGTTCAGACTGCTTTACAAAGACTTCACCGTTGAGGGT
GGCGAACTTACTCCTACCATGAAGGTTAAGAGGAAAGTCGTGGTGGAAAA
ATATGCAAGCCTTATTGAAGAGATGTACGCTTAG