Gchil1521.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1521.t1
Unique Name	Gchil1521.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	734

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:745915..748116 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707597.1
Preferred name	UTP6
PFAMs	U3_assoc_6
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14557
KEGG Pathway	ko03008,map03008
GOs	GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Evalue	6.98e-33
EggNOG OGs	COG5191@1\|root,KOG2396@2759\|Eukaryota
Description	snoRNA binding
COG category	J
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1521	Gchil1521	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 745915..748116 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1521.t1.stop1	Gchil1521.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 745915..745917 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1521.t1.CDS1	Gchil1521.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 745915..748116 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1521.t1.exon1	Gchil1521.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 745915..748116 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1521.t1.start1	Gchil1521.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 748114..748116 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1521.t1	Gchil1521.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 745915..748116 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:745915..748116-
coding sequence from alignment at tig00004403_pilon:745915..748116-

mRNA sequence

>Gchil1521.t1 ID=Gchil1521.t1|Name=Gchil1521.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=734bp
MGDTVERELDGTIPALRAAQKAKILTRTEVSDIVRKRRNYEYNLLRNNVS
RADYLHYAAFERQLSSILRTRATQRELRKIQVERTVNKTAARVNLIYSRA
VQKFRFDDDLWLHYAKHCIKTGSTRAAARVFAKAIAFRNDSERIWLAAIS
FHFDTNGDATGARTLAQRALRALPSSLKLWKEYFRLELCYLGKLVARRLV
IGLPPGANGGSEPSPDVMPSGELDTKSKSNSDENPYSGDLESGYKSSDDI
NGESTEKGASSVKNQTEEREKEKKEYSAGDAHPASSTEFDKGPRQGNTEN
DAADSGQTRNPEERQHATLTDGNEFEEANSSGEESDTSSSGSEEGDEESI
NLESSSDDAGEGFKKLTFWDGGVPFSVFRNASDRLKLSHLDRADFWNVAS
STPFVPPKLLSQMLQFMKANNTGCHVVQIIAIREPWDIDRTTRKRSLGNK
VDEENGEIYLRESDKTALATHAFNVSEFLSAAVSSAQFAQLQDLAVVGVR
SLLQSFIDVVSDTCDSVKFRDAMKKAMSLFESHQAQGMHDVDEPETEENP
SQQDMKLWKHSKFEAILKEAEDGFKADAELYEALKHKLIVPFRSLEQDRL
VCLYLSKESDICRVRSFISAILSLPPVTMESLKAAINAELRVHSTCGRKD
TTLSTGQIDQLLVRHTRQLFKKAVLLPAAKRDVDLWLSYVDFERSVAGDM
LEASKANWKATKVLMPSFQETFTERQTLRNLAH*

spliced messenger RNA

>Gchil1521.t1 ID=Gchil1521.t1|Name=Gchil1521.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2202bp|location=Sequence derived from alignment at tig00004403_pilon:745915..748116- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGATACTGTCGAGAGAGAGCTCGATGGCACTATCCCCGCTCTCCG
CGCCGCTCAAAAAGCAAAGATTCTAACCCGCACTGAGGTGAGCGACATTG
TCCGAAAGCGTCGAAATTACGAGTACAACCTGCTGCGGAATAACGTTTCT
CGCGCAGACTACCTTCACTATGCAGCCTTTGAACGTCAACTCTCCTCCAT
ACTGAGGACAAGGGCCACTCAACGGGAGCTCCGAAAAATTCAAGTTGAGC
GCACAGTCAACAAAACCGCCGCCCGTGTCAATCTCATATACAGTCGTGCA
GTTCAGAAGTTTCGCTTCGACGATGACTTGTGGCTTCATTACGCAAAACA
CTGCATCAAGACAGGCTCCACAAGGGCGGCTGCGCGCGTTTTCGCCAAAG
CTATAGCCTTCAGAAATGACTCGGAACGCATCTGGCTCGCAGCCATTTCC
TTTCATTTCGACACCAACGGCGATGCCACTGGTGCCAGAACTCTGGCACA
AAGAGCGCTGCGAGCGCTTCCGAGTTCGCTCAAACTTTGGAAGGAATACT
TTCGTCTCGAACTTTGCTATCTTGGTAAGCTGGTCGCCAGAAGACTGGTC
ATTGGGCTTCCTCCAGGTGCCAATGGCGGAAGTGAGCCATCTCCGGACGT
GATGCCAAGTGGAGAACTTGATACGAAATCGAAAAGTAACTCGGATGAAA
ACCCTTACTCAGGTGATCTGGAAAGCGGATATAAGAGCTCGGATGACATT
AACGGTGAAAGCACGGAGAAGGGCGCGAGCAGCGTGAAGAATCAAACCGA
AGAACGTGAGAAAGAGAAAAAAGAGTATTCTGCTGGCGACGCCCATCCTG
CTTCCTCCACAGAATTTGATAAGGGGCCCAGGCAGGGTAATACAGAAAAC
GACGCTGCTGATTCAGGCCAAACGCGAAACCCCGAAGAAAGACAGCACGC
CACTCTCACAGATGGAAACGAGTTCGAGGAGGCGAACTCCAGCGGCGAAG
AAAGCGACACAAGTTCTTCTGGCTCTGAAGAAGGTGACGAAGAGTCTATA
AATCTTGAATCCAGCTCTGATGATGCTGGTGAGGGTTTCAAAAAGCTTAC
CTTTTGGGACGGTGGTGTGCCTTTCAGTGTTTTTCGAAATGCTTCCGACC
GTCTCAAACTCTCCCACTTAGACCGAGCTGACTTCTGGAATGTTGCCTCG
AGCACCCCTTTTGTTCCACCAAAGCTTCTGTCGCAAATGCTTCAGTTTAT
GAAAGCTAATAATACCGGGTGTCACGTCGTACAGATCATTGCCATCCGTG
AACCATGGGACATTGATCGCACAACCCGAAAACGGAGCCTAGGTAACAAG
GTCGATGAGGAGAATGGAGAGATTTACTTGCGCGAAAGCGATAAAACTGC
ATTAGCCACACATGCTTTCAATGTCTCAGAATTTCTGAGCGCTGCAGTGT
CTTCCGCACAGTTTGCTCAGCTTCAAGACCTTGCAGTGGTTGGCGTGCGC
TCATTGCTGCAAAGTTTTATAGACGTGGTCAGTGACACATGTGATTCAGT
GAAGTTCAGGGACGCAATGAAGAAAGCCATGTCGCTGTTCGAGTCTCATC
AAGCTCAGGGCATGCACGATGTTGATGAGCCTGAAACTGAAGAAAACCCT
TCGCAACAGGATATGAAGCTGTGGAAGCATTCAAAATTCGAGGCCATTCT
CAAAGAAGCAGAGGATGGATTCAAAGCAGATGCAGAACTTTATGAAGCCT
TGAAGCACAAGTTAATAGTTCCATTCCGAAGTCTTGAACAAGACCGACTC
GTTTGCCTGTATCTATCGAAGGAAAGCGACATTTGTCGCGTACGTAGCTT
TATCAGCGCAATCCTAAGTTTGCCTCCAGTAACCATGGAGTCCCTGAAGG
CTGCGATCAATGCGGAACTCCGAGTGCATTCTACTTGTGGAAGAAAAGAT
ACTACCCTCAGTACTGGCCAAATAGATCAGCTTCTGGTTCGCCACACCAG
ACAGTTGTTCAAGAAGGCAGTATTGCTTCCGGCTGCAAAGAGAGATGTAG
ATCTGTGGTTGTCGTACGTGGACTTCGAACGGTCAGTGGCGGGCGACATG
CTGGAAGCGTCAAAAGCAAATTGGAAAGCCACAAAAGTATTGATGCCATC
GTTCCAAGAAACTTTCACAGAACGCCAAACACTTCGCAACCTCGCGCACT
GA

protein sequence of Gchil1521.t1

>Gchil1521.t1 ID=Gchil1521.t1|Name=Gchil1521.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=734bp
MGDTVERELDGTIPALRAAQKAKILTRTEVSDIVRKRRNYEYNLLRNNVS
RADYLHYAAFERQLSSILRTRATQRELRKIQVERTVNKTAARVNLIYSRA
VQKFRFDDDLWLHYAKHCIKTGSTRAAARVFAKAIAFRNDSERIWLAAIS
FHFDTNGDATGARTLAQRALRALPSSLKLWKEYFRLELCYLGKLVARRLV
IGLPPGANGGSEPSPDVMPSGELDTKSKSNSDENPYSGDLESGYKSSDDI
NGESTEKGASSVKNQTEEREKEKKEYSAGDAHPASSTEFDKGPRQGNTEN
DAADSGQTRNPEERQHATLTDGNEFEEANSSGEESDTSSSGSEEGDEESI
NLESSSDDAGEGFKKLTFWDGGVPFSVFRNASDRLKLSHLDRADFWNVAS
STPFVPPKLLSQMLQFMKANNTGCHVVQIIAIREPWDIDRTTRKRSLGNK
VDEENGEIYLRESDKTALATHAFNVSEFLSAAVSSAQFAQLQDLAVVGVR
SLLQSFIDVVSDTCDSVKFRDAMKKAMSLFESHQAQGMHDVDEPETEENP
SQQDMKLWKHSKFEAILKEAEDGFKADAELYEALKHKLIVPFRSLEQDRL
VCLYLSKESDICRVRSFISAILSLPPVTMESLKAAINAELRVHSTCGRKD
TTLSTGQIDQLLVRHTRQLFKKAVLLPAAKRDVDLWLSYVDFERSVAGDM
LEASKANWKATKVLMPSFQETFTERQTLRNLAH*

mRNA from alignment at tig00004403_pilon:745915..748116-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1521.t1 ID=Gchil1521.t1|Name=Gchil1521.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2202bp|location=Sequence derived from alignment at tig00004403_pilon:745915..748116- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGATACTGTCGAGAGAGAGCTCGATGGCACTATCCCCGCTCTCCG
CGCCGCTCAAAAAGCAAAGATTCTAACCCGCACTGAGGTGAGCGACATTG
TCCGAAAGCGTCGAAATTACGAGTACAACCTGCTGCGGAATAACGTTTCT
CGCGCAGACTACCTTCACTATGCAGCCTTTGAACGTCAACTCTCCTCCAT
ACTGAGGACAAGGGCCACTCAACGGGAGCTCCGAAAAATTCAAGTTGAGC
GCACAGTCAACAAAACCGCCGCCCGTGTCAATCTCATATACAGTCGTGCA
GTTCAGAAGTTTCGCTTCGACGATGACTTGTGGCTTCATTACGCAAAACA
CTGCATCAAGACAGGCTCCACAAGGGCGGCTGCGCGCGTTTTCGCCAAAG
CTATAGCCTTCAGAAATGACTCGGAACGCATCTGGCTCGCAGCCATTTCC
TTTCATTTCGACACCAACGGCGATGCCACTGGTGCCAGAACTCTGGCACA
AAGAGCGCTGCGAGCGCTTCCGAGTTCGCTCAAACTTTGGAAGGAATACT
TTCGTCTCGAACTTTGCTATCTTGGTAAGCTGGTCGCCAGAAGACTGGTC
ATTGGGCTTCCTCCAGGTGCCAATGGCGGAAGTGAGCCATCTCCGGACGT
GATGCCAAGTGGAGAACTTGATACGAAATCGAAAAGTAACTCGGATGAAA
ACCCTTACTCAGGTGATCTGGAAAGCGGATATAAGAGCTCGGATGACATT
AACGGTGAAAGCACGGAGAAGGGCGCGAGCAGCGTGAAGAATCAAACCGA
AGAACGTGAGAAAGAGAAAAAAGAGTATTCTGCTGGCGACGCCCATCCTG
CTTCCTCCACAGAATTTGATAAGGGGCCCAGGCAGGGTAATACAGAAAAC
GACGCTGCTGATTCAGGCCAAACGCGAAACCCCGAAGAAAGACAGCACGC
CACTCTCACAGATGGAAACGAGTTCGAGGAGGCGAACTCCAGCGGCGAAG
AAAGCGACACAAGTTCTTCTGGCTCTGAAGAAGGTGACGAAGAGTCTATA
AATCTTGAATCCAGCTCTGATGATGCTGGTGAGGGTTTCAAAAAGCTTAC
CTTTTGGGACGGTGGTGTGCCTTTCAGTGTTTTTCGAAATGCTTCCGACC
GTCTCAAACTCTCCCACTTAGACCGAGCTGACTTCTGGAATGTTGCCTCG
AGCACCCCTTTTGTTCCACCAAAGCTTCTGTCGCAAATGCTTCAGTTTAT
GAAAGCTAATAATACCGGGTGTCACGTCGTACAGATCATTGCCATCCGTG
AACCATGGGACATTGATCGCACAACCCGAAAACGGAGCCTAGGTAACAAG
GTCGATGAGGAGAATGGAGAGATTTACTTGCGCGAAAGCGATAAAACTGC
ATTAGCCACACATGCTTTCAATGTCTCAGAATTTCTGAGCGCTGCAGTGT
CTTCCGCACAGTTTGCTCAGCTTCAAGACCTTGCAGTGGTTGGCGTGCGC
TCATTGCTGCAAAGTTTTATAGACGTGGTCAGTGACACATGTGATTCAGT
GAAGTTCAGGGACGCAATGAAGAAAGCCATGTCGCTGTTCGAGTCTCATC
AAGCTCAGGGCATGCACGATGTTGATGAGCCTGAAACTGAAGAAAACCCT
TCGCAACAGGATATGAAGCTGTGGAAGCATTCAAAATTCGAGGCCATTCT
CAAAGAAGCAGAGGATGGATTCAAAGCAGATGCAGAACTTTATGAAGCCT
TGAAGCACAAGTTAATAGTTCCATTCCGAAGTCTTGAACAAGACCGACTC
GTTTGCCTGTATCTATCGAAGGAAAGCGACATTTGTCGCGTACGTAGCTT
TATCAGCGCAATCCTAAGTTTGCCTCCAGTAACCATGGAGTCCCTGAAGG
CTGCGATCAATGCGGAACTCCGAGTGCATTCTACTTGTGGAAGAAAAGAT
ACTACCCTCAGTACTGGCCAAATAGATCAGCTTCTGGTTCGCCACACCAG
ACAGTTGTTCAAGAAGGCAGTATTGCTTCCGGCTGCAAAGAGAGATGTAG
ATCTGTGGTTGTCGTACGTGGACTTCGAACGGTCAGTGGCGGGCGACATG
CTGGAAGCGTCAAAAGCAAATTGGAAAGCCACAAAAGTATTGATGCCATC
GTTCCAAGAAACTTTCACAGAACGCCAAACACTTCGCAACCTCGCGCACT
GA

Coding sequence (CDS) from alignment at tig00004403_pilon:745915..748116-

>Gchil1521.t1 ID=Gchil1521.t1|Name=Gchil1521.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2202bp|location=Sequence derived from alignment at tig00004403_pilon:745915..748116- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGATACTGTCGAGAGAGAGCTCGATGGCACTATCCCCGCTCTCCG
CGCCGCTCAAAAAGCAAAGATTCTAACCCGCACTGAGGTGAGCGACATTG
TCCGAAAGCGTCGAAATTACGAGTACAACCTGCTGCGGAATAACGTTTCT
CGCGCAGACTACCTTCACTATGCAGCCTTTGAACGTCAACTCTCCTCCAT
ACTGAGGACAAGGGCCACTCAACGGGAGCTCCGAAAAATTCAAGTTGAGC
GCACAGTCAACAAAACCGCCGCCCGTGTCAATCTCATATACAGTCGTGCA
GTTCAGAAGTTTCGCTTCGACGATGACTTGTGGCTTCATTACGCAAAACA
CTGCATCAAGACAGGCTCCACAAGGGCGGCTGCGCGCGTTTTCGCCAAAG
CTATAGCCTTCAGAAATGACTCGGAACGCATCTGGCTCGCAGCCATTTCC
TTTCATTTCGACACCAACGGCGATGCCACTGGTGCCAGAACTCTGGCACA
AAGAGCGCTGCGAGCGCTTCCGAGTTCGCTCAAACTTTGGAAGGAATACT
TTCGTCTCGAACTTTGCTATCTTGGTAAGCTGGTCGCCAGAAGACTGGTC
ATTGGGCTTCCTCCAGGTGCCAATGGCGGAAGTGAGCCATCTCCGGACGT
GATGCCAAGTGGAGAACTTGATACGAAATCGAAAAGTAACTCGGATGAAA
ACCCTTACTCAGGTGATCTGGAAAGCGGATATAAGAGCTCGGATGACATT
AACGGTGAAAGCACGGAGAAGGGCGCGAGCAGCGTGAAGAATCAAACCGA
AGAACGTGAGAAAGAGAAAAAAGAGTATTCTGCTGGCGACGCCCATCCTG
CTTCCTCCACAGAATTTGATAAGGGGCCCAGGCAGGGTAATACAGAAAAC
GACGCTGCTGATTCAGGCCAAACGCGAAACCCCGAAGAAAGACAGCACGC
CACTCTCACAGATGGAAACGAGTTCGAGGAGGCGAACTCCAGCGGCGAAG
AAAGCGACACAAGTTCTTCTGGCTCTGAAGAAGGTGACGAAGAGTCTATA
AATCTTGAATCCAGCTCTGATGATGCTGGTGAGGGTTTCAAAAAGCTTAC
CTTTTGGGACGGTGGTGTGCCTTTCAGTGTTTTTCGAAATGCTTCCGACC
GTCTCAAACTCTCCCACTTAGACCGAGCTGACTTCTGGAATGTTGCCTCG
AGCACCCCTTTTGTTCCACCAAAGCTTCTGTCGCAAATGCTTCAGTTTAT
GAAAGCTAATAATACCGGGTGTCACGTCGTACAGATCATTGCCATCCGTG
AACCATGGGACATTGATCGCACAACCCGAAAACGGAGCCTAGGTAACAAG
GTCGATGAGGAGAATGGAGAGATTTACTTGCGCGAAAGCGATAAAACTGC
ATTAGCCACACATGCTTTCAATGTCTCAGAATTTCTGAGCGCTGCAGTGT
CTTCCGCACAGTTTGCTCAGCTTCAAGACCTTGCAGTGGTTGGCGTGCGC
TCATTGCTGCAAAGTTTTATAGACGTGGTCAGTGACACATGTGATTCAGT
GAAGTTCAGGGACGCAATGAAGAAAGCCATGTCGCTGTTCGAGTCTCATC
AAGCTCAGGGCATGCACGATGTTGATGAGCCTGAAACTGAAGAAAACCCT
TCGCAACAGGATATGAAGCTGTGGAAGCATTCAAAATTCGAGGCCATTCT
CAAAGAAGCAGAGGATGGATTCAAAGCAGATGCAGAACTTTATGAAGCCT
TGAAGCACAAGTTAATAGTTCCATTCCGAAGTCTTGAACAAGACCGACTC
GTTTGCCTGTATCTATCGAAGGAAAGCGACATTTGTCGCGTACGTAGCTT
TATCAGCGCAATCCTAAGTTTGCCTCCAGTAACCATGGAGTCCCTGAAGG
CTGCGATCAATGCGGAACTCCGAGTGCATTCTACTTGTGGAAGAAAAGAT
ACTACCCTCAGTACTGGCCAAATAGATCAGCTTCTGGTTCGCCACACCAG
ACAGTTGTTCAAGAAGGCAGTATTGCTTCCGGCTGCAAAGAGAGATGTAG
ATCTGTGGTTGTCGTACGTGGACTTCGAACGGTCAGTGGCGGGCGACATG
CTGGAAGCGTCAAAAGCAAATTGGAAAGCCACAAAAGTATTGATGCCATC
GTTCCAAGAAACTTTCACAGAACGCCAAACACTTCGCAACCTCGCGCACT
GA